{"id":"https://openalex.org/W4281731488","doi":"https://doi.org/10.1016/j.compbiomed.2022.105708","title":"Understanding the mutational frequency in SARS-CoV-2 proteome using structural features","display_name":"Understanding the mutational frequency in SARS-CoV-2 proteome using structural features","publication_year":2022,"publication_date":"2022-06-07","ids":{"openalex":"https://openalex.org/W4281731488","doi":"https://doi.org/10.1016/j.compbiomed.2022.105708","pmid":"https://pubmed.ncbi.nlm.nih.gov/35714506"},"language":"en","primary_location":{"id":"doi:10.1016/j.compbiomed.2022.105708","is_oa":true,"landing_page_url":"https://doi.org/10.1016/j.compbiomed.2022.105708","pdf_url":"https://www.sciencedirect.com/science/article/am/pii/S0010482522004899?via%3Dihub","source":{"id":"https://openalex.org/S44278595","display_name":"Computers in Biology and Medicine","issn_l":"0010-4825","issn":["0010-4825","1879-0534"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computers in Biology and Medicine","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://www.sciencedirect.com/science/article/am/pii/S0010482522004899?via%3Dihub","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5051850545","display_name":"Puneet Rawat","orcid":"https://orcid.org/0000-0002-3822-8081"},"institutions":[{"id":"https://openalex.org/I1281400175","display_name":"Oslo University Hospital","ror":"https://ror.org/00j9c2840","country_code":"NO","type":"healthcare","lineage":["https://openalex.org/I1281400175"]},{"id":"https://openalex.org/I184942183","display_name":"University of Oslo","ror":"https://ror.org/01xtthb56","country_code":"NO","type":"education","lineage":["https://openalex.org/I184942183"]},{"id":"https://openalex.org/I24676775","display_name":"Indian Institute of Technology Madras","ror":"https://ror.org/03v0r5n49","country_code":"IN","type":"facility","lineage":["https://openalex.org/I24676775"]}],"countries":["IN","NO"],"is_corresponding":true,"raw_author_name":"Puneet Rawat","raw_affiliation_strings":["University of Oslo and Oslo University Hospital, Oslo, Norway; Department of Biotechnology, Bhupat and Jyoti Mehta School of Biosciences, Indian Institute of Technology Madras, Chennai, India. Electronic address: puneet.rawat@medisin.uio.no","University of Oslo and Oslo University Hospital, Oslo, Norway","Department of Biotechnology, Bhupat and Jyoti Mehta School of Biosciences, Indian Institute of Technology Madras, Chennai, India"],"raw_orcid":"https://orcid.org/0000-0002-3822-8081","affiliations":[{"raw_affiliation_string":"University of Oslo and Oslo University Hospital, Oslo, Norway; Department of Biotechnology, Bhupat and Jyoti Mehta School of Biosciences, Indian Institute of Technology Madras, Chennai, India. Electronic address: puneet.rawat@medisin.uio.no","institution_ids":["https://openalex.org/I184942183"]},{"raw_affiliation_string":"University of Oslo and Oslo University Hospital, Oslo, Norway","institution_ids":["https://openalex.org/I1281400175","https://openalex.org/I184942183"]},{"raw_affiliation_string":"Department of Biotechnology, Bhupat and Jyoti Mehta School of Biosciences, Indian Institute of Technology Madras, Chennai, India","institution_ids":["https://openalex.org/I24676775"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012294246","display_name":"Divya Sharma","orcid":"https://orcid.org/0000-0002-1103-3137"},"institutions":[{"id":"https://openalex.org/I24676775","display_name":"Indian Institute of Technology Madras","ror":"https://ror.org/03v0r5n49","country_code":"IN","type":"facility","lineage":["https://openalex.org/I24676775"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Divya Sharma","raw_affiliation_strings":["Department of Biotechnology, Bhupat and Jyoti Mehta School of Biosciences, Indian Institute of Technology Madras, Chennai, India"],"raw_orcid":"https://orcid.org/0000-0002-1103-3137","affiliations":[{"raw_affiliation_string":"Department of Biotechnology, Bhupat and Jyoti Mehta School of Biosciences, Indian Institute of Technology Madras, Chennai, India","institution_ids":["https://openalex.org/I24676775"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078761609","display_name":"Medha Pandey","orcid":"https://orcid.org/0000-0001-8409-5032"},"institutions":[{"id":"https://openalex.org/I24676775","display_name":"Indian Institute of Technology Madras","ror":"https://ror.org/03v0r5n49","country_code":"IN","type":"facility","lineage":["https://openalex.org/I24676775"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Medha Pandey","raw_affiliation_strings":["Department of Biotechnology, Bhupat and Jyoti Mehta School of Biosciences, Indian Institute of Technology Madras, Chennai, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biotechnology, Bhupat and Jyoti Mehta School of Biosciences, Indian Institute of Technology Madras, Chennai, India","institution_ids":["https://openalex.org/I24676775"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035367739","display_name":"R. Prabakaran","orcid":"https://orcid.org/0000-0002-0172-3716"},"institutions":[{"id":"https://openalex.org/I24676775","display_name":"Indian Institute of Technology Madras","ror":"https://ror.org/03v0r5n49","country_code":"IN","type":"facility","lineage":["https://openalex.org/I24676775"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"R. Prabakaran","raw_affiliation_strings":["Department of Biotechnology, Bhupat and Jyoti Mehta School of Biosciences, Indian Institute of Technology Madras, Chennai, India"],"raw_orcid":"https://orcid.org/0000-0002-0172-3716","affiliations":[{"raw_affiliation_string":"Department of Biotechnology, Bhupat and Jyoti Mehta School of Biosciences, Indian Institute of Technology Madras, Chennai, India","institution_ids":["https://openalex.org/I24676775"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5046879365","display_name":"M. Michael Gromiha","orcid":"https://orcid.org/0000-0002-1776-4096"},"institutions":[{"id":"https://openalex.org/I114531698","display_name":"Tokyo Institute of Technology","ror":"https://ror.org/0112mx960","country_code":"JP","type":"education","lineage":["https://openalex.org/I114531698"]},{"id":"https://openalex.org/I24676775","display_name":"Indian Institute of Technology Madras","ror":"https://ror.org/03v0r5n49","country_code":"IN","type":"facility","lineage":["https://openalex.org/I24676775"]}],"countries":["IN","JP"],"is_corresponding":true,"raw_author_name":"M. Michael Gromiha","raw_affiliation_strings":["Department of Biotechnology, Bhupat and Jyoti Mehta School of Biosciences, Indian Institute of Technology Madras, Chennai, India; Department of Computer Science, Tokyo Institute of Technology, Yokohama, Kanagawa, Japan. Electronic address: gromiha@iitm.ac.in","Department of Computer Science, Tokyo Institute of Technology, Yokohama, Kanagawa, Japan","Department of Biotechnology, Bhupat and Jyoti Mehta School of Biosciences, Indian Institute of Technology Madras, Chennai, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biotechnology, Bhupat and Jyoti Mehta School of Biosciences, Indian Institute of Technology Madras, Chennai, India; Department of Computer Science, Tokyo Institute of Technology, Yokohama, Kanagawa, Japan. Electronic address: gromiha@iitm.ac.in","institution_ids":["https://openalex.org/I24676775"]},{"raw_affiliation_string":"Department of Computer Science, Tokyo Institute of Technology, Yokohama, Kanagawa, Japan","institution_ids":["https://openalex.org/I114531698"]},{"raw_affiliation_string":"Department of Biotechnology, Bhupat and Jyoti Mehta School of Biosciences, Indian Institute of Technology Madras, Chennai, India","institution_ids":["https://openalex.org/I24676775"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5046879365","https://openalex.org/A5051850545"],"corresponding_institution_ids":["https://openalex.org/I114531698","https://openalex.org/I1281400175","https://openalex.org/I184942183","https://openalex.org/I24676775"],"apc_list":{"value":2610,"currency":"USD","value_usd":2610},"apc_paid":{"value":2610,"currency":"USD","value_usd":2610},"fwci":0.5864,"has_fulltext":true,"cited_by_count":7,"citation_normalized_percentile":{"value":0.62592518,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":97},"biblio":{"volume":"147","issue":null,"first_page":"105708","last_page":"105708"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.995199978351593,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10118","display_name":"SARS-CoV-2 and COVID-19 Research","score":0.9937999844551086,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/severe-acute-respiratory-syndrome-coronavirus-2","display_name":"Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)","score":0.6533340811729431},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6154465675354004},{"id":"https://openalex.org/keywords/coronavirus-disease-2019","display_name":"Coronavirus disease 2019 (COVID-19)","score":0.6029778718948364},{"id":"https://openalex.org/keywords/proteome","display_name":"Proteome","score":0.5683004856109619},{"id":"https://openalex.org/keywords/sars-virus","display_name":"Sars virus","score":0.5355814099311829},{"id":"https://openalex.org/keywords/2019-20-coronavirus-outbreak","display_name":"2019-20 coronavirus outbreak","score":0.5138676166534424},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.461668998003006},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.35513100028038025},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2838705778121948},{"id":"https://openalex.org/keywords/virology","display_name":"Virology","score":0.2018454670906067},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.1958169937133789},{"id":"https://openalex.org/keywords/outbreak","display_name":"Outbreak","score":0.09307506680488586}],"concepts":[{"id":"https://openalex.org/C3007834351","wikidata":"https://www.wikidata.org/wiki/Q82069695","display_name":"Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)","level":5,"score":0.6533340811729431},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6154465675354004},{"id":"https://openalex.org/C3008058167","wikidata":"https://www.wikidata.org/wiki/Q84263196","display_name":"Coronavirus disease 2019 (COVID-19)","level":4,"score":0.6029778718948364},{"id":"https://openalex.org/C104397665","wikidata":"https://www.wikidata.org/wiki/Q860947","display_name":"Proteome","level":2,"score":0.5683004856109619},{"id":"https://openalex.org/C3020799909","wikidata":"https://www.wikidata.org/wiki/Q85438966","display_name":"Sars virus","level":5,"score":0.5355814099311829},{"id":"https://openalex.org/C3006700255","wikidata":"https://www.wikidata.org/wiki/Q81068910","display_name":"2019-20 coronavirus outbreak","level":3,"score":0.5138676166534424},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.461668998003006},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.35513100028038025},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2838705778121948},{"id":"https://openalex.org/C159047783","wikidata":"https://www.wikidata.org/wiki/Q7215","display_name":"Virology","level":1,"score":0.2018454670906067},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.1958169937133789},{"id":"https://openalex.org/C116675565","wikidata":"https://www.wikidata.org/wiki/Q3241045","display_name":"Outbreak","level":2,"score":0.09307506680488586},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.0},{"id":"https://openalex.org/C524204448","wikidata":"https://www.wikidata.org/wiki/Q788926","display_name":"Infectious disease (medical specialty)","level":3,"score":0.0},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016679","descriptor_name":"Genome, Viral","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016679","descriptor_name":"Genome, Viral","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016679","descriptor_name":"Genome, Viral","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D058873","descriptor_name":"Pandemics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058873","descriptor_name":"Pandemics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058873","descriptor_name":"Pandemics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1016/j.compbiomed.2022.105708","is_oa":true,"landing_page_url":"https://doi.org/10.1016/j.compbiomed.2022.105708","pdf_url":"https://www.sciencedirect.com/science/article/am/pii/S0010482522004899?via%3Dihub","source":{"id":"https://openalex.org/S44278595","display_name":"Computers in Biology and Medicine","issn_l":"0010-4825","issn":["0010-4825","1879-0534"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computers in Biology and Medicine","raw_type":"journal-article"},{"id":"pmid:35714506","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35714506","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computers in biology and medicine","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:9173821","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9173821","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Comput Biol Med","raw_type":"Text"},{"id":"pmh:oai:www.duo.uio.no:10852/101305","is_oa":true,"landing_page_url":"http://hdl.handle.net/10852/101305","pdf_url":null,"source":{"id":"https://openalex.org/S4306401716","display_name":"Duo Research Archive (University of Oslo)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I184942183","host_organization_name":"University of Oslo","host_organization_lineage":["https://openalex.org/I184942183"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"0010-4825","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1016/j.compbiomed.2022.105708","is_oa":true,"landing_page_url":"https://doi.org/10.1016/j.compbiomed.2022.105708","pdf_url":"https://www.sciencedirect.com/science/article/am/pii/S0010482522004899?via%3Dihub","source":{"id":"https://openalex.org/S44278595","display_name":"Computers in Biology and Medicine","issn_l":"0010-4825","issn":["0010-4825","1879-0534"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computers in Biology and Medicine","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.44999998807907104,"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3"}],"awards":[{"id":"https://openalex.org/G1904489062","display_name":null,"funder_award_id":"CR1718CSE001RBEIBRAV","funder_id":"https://openalex.org/F4320322211","funder_display_name":"Indian Institute of Technology Madras"}],"funders":[{"id":"https://openalex.org/F4320322211","display_name":"Indian Institute of Technology Madras","ror":"https://ror.org/03v0r5n49"},{"id":"https://openalex.org/F4320322724","display_name":"Ministry of Education, India","ror":"https://ror.org/048xjjh50"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4281731488.pdf","grobid_xml":"https://content.openalex.org/works/W4281731488.grobid-xml"},"referenced_works_count":81,"referenced_works":["https://openalex.org/W1570448133","https://openalex.org/W1975272103","https://openalex.org/W1981625739","https://openalex.org/W1987134040","https://openalex.org/W1997401091","https://openalex.org/W2008708467","https://openalex.org/W2014731953","https://openalex.org/W2028989849","https://openalex.org/W2066001051","https://openalex.org/W2102818658","https://openalex.org/W2108823152","https://openalex.org/W2128868625","https://openalex.org/W2130710252","https://openalex.org/W2157255054","https://openalex.org/W2158714788","https://openalex.org/W2161910692","https://openalex.org/W2171978649","https://openalex.org/W2520533295","https://openalex.org/W2614935527","https://openalex.org/W2801491392","https://openalex.org/W2806097690","https://openalex.org/W2809990379","https://openalex.org/W2886709672","https://openalex.org/W2920817727","https://openalex.org/W2939690863","https://openalex.org/W2949292019","https://openalex.org/W2970416468","https://openalex.org/W2979333452","https://openalex.org/W2980870427","https://openalex.org/W2986268970","https://openalex.org/W3004318991","https://openalex.org/W3005510968","https://openalex.org/W3010373510","https://openalex.org/W3022687324","https://openalex.org/W3029124060","https://openalex.org/W3033054589","https://openalex.org/W3034130789","https://openalex.org/W3036202381","https://openalex.org/W3036703196","https://openalex.org/W3038661011","https://openalex.org/W3041202117","https://openalex.org/W3043431476","https://openalex.org/W3081936186","https://openalex.org/W3092397615","https://openalex.org/W3093768302","https://openalex.org/W3097914258","https://openalex.org/W3103768818","https://openalex.org/W3108015137","https://openalex.org/W3115254893","https://openalex.org/W3116123883","https://openalex.org/W3121893592","https://openalex.org/W3122037590","https://openalex.org/W3134906456","https://openalex.org/W3137649039","https://openalex.org/W3138783506","https://openalex.org/W3144240355","https://openalex.org/W3156522942","https://openalex.org/W3163342170","https://openalex.org/W3170142578","https://openalex.org/W3171314425","https://openalex.org/W3185414884","https://openalex.org/W3194636744","https://openalex.org/W3194731062","https://openalex.org/W3201448731","https://openalex.org/W3213283038","https://openalex.org/W3216030773","https://openalex.org/W4200241283","https://openalex.org/W4200314687","https://openalex.org/W4205619961","https://openalex.org/W4206594482","https://openalex.org/W4206990654","https://openalex.org/W4213157778","https://openalex.org/W4213345021","https://openalex.org/W4225384933","https://openalex.org/W6634094483","https://openalex.org/W6768743654","https://openalex.org/W6774101627","https://openalex.org/W6778962826","https://openalex.org/W6779698590","https://openalex.org/W6785728133","https://openalex.org/W6796419079"],"related_works":["https://openalex.org/W3036314732","https://openalex.org/W3009669391","https://openalex.org/W3176864053","https://openalex.org/W4206669628","https://openalex.org/W3171943759","https://openalex.org/W4292098121","https://openalex.org/W3154141118","https://openalex.org/W4388896133","https://openalex.org/W3031607536","https://openalex.org/W3198183218"],"abstract_inverted_index":{"The":[0,115,200],"prolonged":[1],"transmission":[2],"of":[3,25,29,35,41,65,121,175,208,210],"the":[4,14,23,33,42,54,71,99,122,140,147,183,188,213],"severe":[5],"acute":[6],"respiratory":[7],"syndrome":[8],"coronavirus":[9],"2":[10],"(SARS-CoV-2)":[11],"virus":[12,43],"in":[13,53,185],"human":[15],"population":[16],"has":[17],"led":[18],"to":[19,60,79,89,145,162,198,220],"demographic":[20],"divergence":[21],"and":[22,39,84,104,118,136,149,165,177,181,223],"emergence":[24],"several":[26],"location-specific":[27],"clusters":[28],"viral":[30,55,81,110],"strains.":[31],"Although":[32],"effect":[34],"mutation(s)":[36],"on":[37,109],"severity":[38],"survival":[40],"is":[44,48,191],"still":[45],"unclear,":[46],"it":[47],"evident":[49],"that":[50,126],"certain":[51],"sites":[52,101,168],"proteome":[56],"are":[57],"more/less":[58],"prone":[59],"mutations.":[61,114],"In":[62,93],"fact,":[63],"millions":[64],"SARS-CoV-2":[66,123],"sequences":[67],"collected":[68],"all":[69],"over":[70],"world":[72],"have":[73,97],"provided":[74],"us":[75],"a":[76],"unique":[77],"opportunity":[78],"understand":[80],"protein":[82],"mutations":[83],"develop":[85],"novel":[86],"computational":[87],"approaches":[88],"predict":[90,163],"mutational":[91],"patterns.":[92],"this":[94],"study,":[95],"we":[96],"classified":[98],"mutation":[100,141],"into":[102],"low":[103,148,164],"high":[105,150,166],"mutability":[106,151,167],"classes":[107],"based":[108],"isolates":[111],"count":[112],"containing":[113],"physicochemical":[116],"features":[117,127],"structural":[119],"analysis":[120,201],"proteins":[124],"showed":[125],"including":[128],"residue":[129,133],"type,":[130],"surface":[131],"accessibility,":[132],"bulkiness,":[134],"stability":[135],"sequence":[137],"conservation":[138],"at":[139,169],"site":[142],"were":[143],"able":[144],"classify":[146],"sites.":[152],"We":[153],"further":[154],"developed":[155],"machine":[156],"learning":[157],"models":[158],"using":[159],"above-mentioned":[160],"features,":[161],"different":[170],"selection":[171,189],"thresholds":[172],"(ranging":[173],"5-30%":[174],"topmost":[176],"bottommost":[178],"mutated":[179],"sites)":[180],"observed":[182],"improvement":[184],"performance":[186],"as":[187],"threshold":[190],"reduced":[192],"(prediction":[193],"accuracy":[194],"ranging":[195],"from":[196],"65":[197],"77%).":[199],"will":[202],"be":[203,218],"useful":[204],"for":[205,212,226],"early":[206],"detection":[207],"variants":[209],"concern":[211],"SARS-CoV-2,":[214],"which":[215],"can":[216],"also":[217],"applied":[219],"other":[221],"existing":[222],"emerging":[224],"viruses":[225],"another":[227],"pandemic":[228],"prevention.":[229]},"counts_by_year":[{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":2}],"updated_date":"2026-07-02T09:51:11.867554","created_date":"2025-10-10T00:00:00"}
