{"id":"https://openalex.org/W2768175056","doi":"https://doi.org/10.1016/j.compbiomed.2017.11.016","title":"PeptideNavigator: An interactive tool for exploring large and complex data sets generated during peptide-based drug design projects","display_name":"PeptideNavigator: An interactive tool for exploring large and complex data sets generated during peptide-based drug design projects","publication_year":2017,"publication_date":"2017-11-24","ids":{"openalex":"https://openalex.org/W2768175056","doi":"https://doi.org/10.1016/j.compbiomed.2017.11.016","mag":"2768175056","pmid":"https://pubmed.ncbi.nlm.nih.gov/29207334"},"language":"en","primary_location":{"id":"doi:10.1016/j.compbiomed.2017.11.016","is_oa":false,"landing_page_url":"https://doi.org/10.1016/j.compbiomed.2017.11.016","pdf_url":null,"source":{"id":"https://openalex.org/S44278595","display_name":"Computers in Biology and Medicine","issn_l":"0010-4825","issn":["0010-4825","1879-0534"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computers in Biology and Medicine","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5035355230","display_name":"Kyle I. Diller","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Kyle I. Diller","raw_affiliation_strings":["CMDBioscience Inc., 5 Science Park, New Haven, CT 06511, United States"],"affiliations":[{"raw_affiliation_string":"CMDBioscience Inc., 5 Science Park, New Haven, CT 06511, United States","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066778857","display_name":"Alexander S. Bayden","orcid":null},"institutions":[{"id":"https://openalex.org/I4210102373","display_name":"Ideaya Biosciences (United States)","ror":"https://ror.org/00qmj8087","country_code":"US","type":"company","lineage":["https://openalex.org/I4210102373"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Alexander S. Bayden","raw_affiliation_strings":["CMDBioscience Inc., 5 Science Park, New Haven, CT 06511, United States; IDEAYA Biosciences Inc., 7000 Shoreline Court, Suite 350, South San Francisco, CA 94080, United States","CMDBioscience Inc., 5 Science Park, New Haven, CT 06511, United States","IDEAYA Biosciences Inc., 7000 Shoreline Court, Suite 350, South San Francisco, CA 94080, United States"],"affiliations":[{"raw_affiliation_string":"CMDBioscience Inc., 5 Science Park, New Haven, CT 06511, United States; IDEAYA Biosciences Inc., 7000 Shoreline Court, Suite 350, South San Francisco, CA 94080, United States","institution_ids":[]},{"raw_affiliation_string":"CMDBioscience Inc., 5 Science Park, New Haven, CT 06511, United States","institution_ids":[]},{"raw_affiliation_string":"IDEAYA Biosciences Inc., 7000 Shoreline Court, Suite 350, South San Francisco, CA 94080, United States","institution_ids":["https://openalex.org/I4210102373"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036202144","display_name":"Joseph Audie","orcid":null},"institutions":[{"id":"https://openalex.org/I130186095","display_name":"Sacred Heart University","ror":"https://ror.org/0085j8z36","country_code":"US","type":"education","lineage":["https://openalex.org/I130186095"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Joseph Audie","raw_affiliation_strings":["CMDBioscience Inc., 5 Science Park, New Haven, CT 06511, United States; Chemistry Department, Sacred Heart University, 5151 Park Avenue, Fairfield, CT 06825, United States","Chemistry Department, Sacred Heart University, 5151 Park Avenue, Fairfield, CT 06825, United States","CMDBioscience Inc., 5 Science Park, New Haven, CT 06511, United States"],"affiliations":[{"raw_affiliation_string":"CMDBioscience Inc., 5 Science Park, New Haven, CT 06511, United States; Chemistry Department, Sacred Heart University, 5151 Park Avenue, Fairfield, CT 06825, United States","institution_ids":[]},{"raw_affiliation_string":"Chemistry Department, Sacred Heart University, 5151 Park Avenue, Fairfield, CT 06825, United States","institution_ids":["https://openalex.org/I130186095"]},{"raw_affiliation_string":"CMDBioscience Inc., 5 Science Park, New Haven, CT 06511, United States","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5069345710","display_name":"David Diller","orcid":"https://orcid.org/0000-0003-4998-8374"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"David J. Diller","raw_affiliation_strings":["CMDBioscience Inc., 5 Science Park, New Haven, CT 06511, United States. Electronic address: djrdiller@gmail.com","CMDBioscience Inc., 5 Science Park, New Haven, CT 06511, United States"],"affiliations":[{"raw_affiliation_string":"CMDBioscience Inc., 5 Science Park, New Haven, CT 06511, United States. Electronic address: djrdiller@gmail.com","institution_ids":[]},{"raw_affiliation_string":"CMDBioscience Inc., 5 Science Park, New Haven, CT 06511, United States","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5069345710"],"corresponding_institution_ids":[],"apc_list":{"value":2610,"currency":"USD","value_usd":2610},"apc_paid":null,"fwci":0.1745,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.54390502,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"92","issue":null,"first_page":"176","last_page":"187"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11103","display_name":"Antimicrobial Peptides and Activities","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/2404","display_name":"Microbiology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11103","display_name":"Antimicrobial Peptides and Activities","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/2404","display_name":"Microbiology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10911","display_name":"Chemical Synthesis and Analysis","score":0.9965000152587891,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.996399998664856,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.754796028137207},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.5686827301979065},{"id":"https://openalex.org/keywords/ramachandran-plot","display_name":"Ramachandran plot","score":0.4943697452545166},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.4383251965045929},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.4347696900367737},{"id":"https://openalex.org/keywords/human\u2013computer-interaction","display_name":"Human\u2013computer interaction","score":0.4214323163032532},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.28440383076667786},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.1333642303943634}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.754796028137207},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.5686827301979065},{"id":"https://openalex.org/C14301744","wikidata":"https://www.wikidata.org/wiki/Q579211","display_name":"Ramachandran plot","level":3,"score":0.4943697452545166},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.4383251965045929},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4347696900367737},{"id":"https://openalex.org/C107457646","wikidata":"https://www.wikidata.org/wiki/Q207434","display_name":"Human\u2013computer interaction","level":1,"score":0.4214323163032532},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.28440383076667786},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.1333642303943634},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015195","descriptor_name":"Drug Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015195","descriptor_name":"Drug Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015195","descriptor_name":"Drug Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1016/j.compbiomed.2017.11.016","is_oa":false,"landing_page_url":"https://doi.org/10.1016/j.compbiomed.2017.11.016","pdf_url":null,"source":{"id":"https://openalex.org/S44278595","display_name":"Computers in Biology and Medicine","issn_l":"0010-4825","issn":["0010-4825","1879-0534"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computers in Biology and Medicine","raw_type":"journal-article"},{"id":"pmid:29207334","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29207334","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computers in biology and medicine","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":24,"referenced_works":["https://openalex.org/W1549965663","https://openalex.org/W1572961809","https://openalex.org/W1844502413","https://openalex.org/W1931581539","https://openalex.org/W1953569147","https://openalex.org/W1964007667","https://openalex.org/W1969350101","https://openalex.org/W2025431129","https://openalex.org/W2041593863","https://openalex.org/W2049902088","https://openalex.org/W2060846993","https://openalex.org/W2101553545","https://openalex.org/W2109871942","https://openalex.org/W2128332459","https://openalex.org/W2130479394","https://openalex.org/W2134731229","https://openalex.org/W2134967712","https://openalex.org/W2166593999","https://openalex.org/W2467628837","https://openalex.org/W2546472373","https://openalex.org/W2566166953","https://openalex.org/W2597182293","https://openalex.org/W2601971475","https://openalex.org/W3036141164"],"related_works":["https://openalex.org/W2111979569","https://openalex.org/W2047962024","https://openalex.org/W2169379013","https://openalex.org/W4317935117","https://openalex.org/W5642939","https://openalex.org/W2159734136","https://openalex.org/W2027167947","https://openalex.org/W2381878345","https://openalex.org/W2614987141","https://openalex.org/W1597119711"],"abstract_inverted_index":null,"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2020,"cited_by_count":1}],"updated_date":"2026-01-13T01:12:25.745995","created_date":"2025-10-10T00:00:00"}
