{"id":"https://openalex.org/W7164389934","doi":"https://doi.org/10.1016/j.compbiolchem.2026.109171","title":"DHG-EPI: A dual-stream hypergraph learning framework with multi-level gating for essential protein identification","display_name":"DHG-EPI: A dual-stream hypergraph learning framework with multi-level gating for essential protein identification","publication_year":2026,"publication_date":"2026-06-12","ids":{"openalex":"https://openalex.org/W7164389934","doi":"https://doi.org/10.1016/j.compbiolchem.2026.109171","pmid":"https://pubmed.ncbi.nlm.nih.gov/42288106"},"language":"en","primary_location":{"id":"doi:10.1016/j.compbiolchem.2026.109171","is_oa":false,"landing_page_url":"https://doi.org/10.1016/j.compbiolchem.2026.109171","pdf_url":null,"source":{"id":"https://openalex.org/S104924063","display_name":"Computational Biology and Chemistry","issn_l":"1476-9271","issn":["1476-9271","1476-928X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computational Biology and Chemistry","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5081284604","display_name":"Wei Liu","orcid":"https://orcid.org/0000-0001-8503-4063"},"institutions":[{"id":"https://openalex.org/I78978612","display_name":"Yangzhou University","ror":"https://ror.org/03tqb8s11","country_code":"CN","type":"education","lineage":["https://openalex.org/I78978612"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Wei Liu","raw_affiliation_strings":["College of Information and Artificial Intelligence, Yangzhou University, Yangzhou, Jiangsu, 225009, China. Electronic address: weiliu@yzu.edu.cn"],"raw_orcid":"https://orcid.org/0000-0001-8503-4063","affiliations":[{"raw_affiliation_string":"College of Information and Artificial Intelligence, Yangzhou University, Yangzhou, Jiangsu, 225009, China. Electronic address: weiliu@yzu.edu.cn","institution_ids":["https://openalex.org/I78978612"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5138465473","display_name":"Jun Chen (4238)","orcid":null},"institutions":[{"id":"https://openalex.org/I78978612","display_name":"Yangzhou University","ror":"https://ror.org/03tqb8s11","country_code":"CN","type":"education","lineage":["https://openalex.org/I78978612"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jun Chen","raw_affiliation_strings":["College of Information and Artificial Intelligence, Yangzhou University, Yangzhou, Jiangsu, 225009, China. Electronic address: mz120241004@stu.yzu.edu.cn"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Information and Artificial Intelligence, Yangzhou University, Yangzhou, Jiangsu, 225009, China. Electronic address: mz120241004@stu.yzu.edu.cn","institution_ids":["https://openalex.org/I78978612"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5138473973","display_name":"Yixiao Qian","orcid":null},"institutions":[{"id":"https://openalex.org/I78978612","display_name":"Yangzhou University","ror":"https://ror.org/03tqb8s11","country_code":"CN","type":"education","lineage":["https://openalex.org/I78978612"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yixiao Qian","raw_affiliation_strings":["College of Information and Artificial Intelligence, Yangzhou University, Yangzhou, Jiangsu, 225009, China. Electronic address: mz120241012@stu.yzu.edu.cn"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Information and Artificial Intelligence, Yangzhou University, Yangzhou, Jiangsu, 225009, China. Electronic address: mz120241012@stu.yzu.edu.cn","institution_ids":["https://openalex.org/I78978612"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5138481311","display_name":"Ling Chen","orcid":null},"institutions":[{"id":"https://openalex.org/I4210108113","display_name":"Yango University","ror":"https://ror.org/01eqh1863","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210108113"]},{"id":"https://openalex.org/I78978612","display_name":"Yangzhou University","ror":"https://ror.org/03tqb8s11","country_code":"CN","type":"education","lineage":["https://openalex.org/I78978612"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ling Chen","raw_affiliation_strings":["College of Information and Artificial Intelligence, Yangzhou University, Yangzhou, Jiangsu, 225009, China. Electronic address: lchen@yzu.edu.cn"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Information and Artificial Intelligence, Yangzhou University, Yangzhou, Jiangsu, 225009, China. Electronic address: lchen@yzu.edu.cn","institution_ids":["https://openalex.org/I78978612","https://openalex.org/I4210108113"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5081284604"],"corresponding_institution_ids":["https://openalex.org/I78978612"],"apc_list":{"value":2960,"currency":"USD","value_usd":2960},"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.71000159,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"124","issue":"Pt 2","first_page":"109171","last_page":"109171"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.492900013923645,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.492900013923645,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.16050000488758087,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.1469999998807907,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/hypergraph","display_name":"Hypergraph","score":0.6815999746322632},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.6629999876022339},{"id":"https://openalex.org/keywords/gating","display_name":"Gating","score":0.59170001745224},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.3264000117778778},{"id":"https://openalex.org/keywords/protein\u2013protein-interaction","display_name":"Protein\u2013protein interaction","score":0.30660000443458557}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6819999814033508},{"id":"https://openalex.org/C2781221856","wikidata":"https://www.wikidata.org/wiki/Q840247","display_name":"Hypergraph","level":2,"score":0.6815999746322632},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.6629999876022339},{"id":"https://openalex.org/C194544171","wikidata":"https://www.wikidata.org/wiki/Q21105679","display_name":"Gating","level":2,"score":0.59170001745224},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.49050000309944153},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.3264000117778778},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.3192000091075897},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3158999979496002},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.30809998512268066},{"id":"https://openalex.org/C11804247","wikidata":"https://www.wikidata.org/wiki/Q896177","display_name":"Protein\u2013protein interaction","level":2,"score":0.30660000443458557},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.2985999882221222},{"id":"https://openalex.org/C12426560","wikidata":"https://www.wikidata.org/wiki/Q189569","display_name":"Basis (linear algebra)","level":2,"score":0.28600001335144043},{"id":"https://openalex.org/C72634772","wikidata":"https://www.wikidata.org/wiki/Q386824","display_name":"Data integration","level":2,"score":0.257999986410141}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1016/j.compbiolchem.2026.109171","is_oa":false,"landing_page_url":"https://doi.org/10.1016/j.compbiolchem.2026.109171","pdf_url":null,"source":{"id":"https://openalex.org/S104924063","display_name":"Computational Biology and Chemistry","issn_l":"1476-9271","issn":["1476-9271","1476-928X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computational Biology and Chemistry","raw_type":"journal-article"},{"id":"pmid:42288106","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/42288106","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computational biology and chemistry","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/2","display_name":"Zero hunger","score":0.43655693531036377}],"awards":[],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":40,"referenced_works":["https://openalex.org/W1527927437","https://openalex.org/W1973758399","https://openalex.org/W1986310535","https://openalex.org/W2006683252","https://openalex.org/W2017975254","https://openalex.org/W2087194317","https://openalex.org/W2088590769","https://openalex.org/W2115746733","https://openalex.org/W2116117181","https://openalex.org/W2117720828","https://openalex.org/W2119114096","https://openalex.org/W2130790725","https://openalex.org/W2140948740","https://openalex.org/W2153624566","https://openalex.org/W2154600255","https://openalex.org/W2155320925","https://openalex.org/W2162891889","https://openalex.org/W2168708357","https://openalex.org/W2811037407","https://openalex.org/W2928665623","https://openalex.org/W2991321419","https://openalex.org/W3037436972","https://openalex.org/W3093053585","https://openalex.org/W3187503419","https://openalex.org/W4236956086","https://openalex.org/W4289766530","https://openalex.org/W4323811124","https://openalex.org/W4367668070","https://openalex.org/W4382982095","https://openalex.org/W4384341779","https://openalex.org/W4390491031","https://openalex.org/W4393217202","https://openalex.org/W4393222396","https://openalex.org/W4399558141","https://openalex.org/W4401726218","https://openalex.org/W4404246527","https://openalex.org/W4406047575","https://openalex.org/W4407399090","https://openalex.org/W4407846852","https://openalex.org/W4414499039"],"related_works":[],"abstract_inverted_index":null,"counts_by_year":[],"updated_date":"2026-06-16T07:32:37.131356","created_date":"2026-06-12T00:00:00"}
