{"id":"https://openalex.org/W7161252033","doi":"https://doi.org/10.1016/j.compbiolchem.2026.109125","title":"Opt-DMA-trans: Explainable optimized residual dense-assisted multi-scale attention transformer assisted multi-class nucleic acid-binding proteins (NABP) classification system","display_name":"Opt-DMA-trans: Explainable optimized residual dense-assisted multi-scale attention transformer assisted multi-class nucleic acid-binding proteins (NABP) classification system","publication_year":2026,"publication_date":"2026-05-15","ids":{"openalex":"https://openalex.org/W7161252033","doi":"https://doi.org/10.1016/j.compbiolchem.2026.109125","pmid":"https://pubmed.ncbi.nlm.nih.gov/42172806"},"language":"en","primary_location":{"id":"doi:10.1016/j.compbiolchem.2026.109125","is_oa":false,"landing_page_url":"https://doi.org/10.1016/j.compbiolchem.2026.109125","pdf_url":null,"source":{"id":"https://openalex.org/S104924063","display_name":"Computational Biology and Chemistry","issn_l":"1476-9271","issn":["1476-9271","1476-928X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computational Biology and Chemistry","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5136270041","display_name":"Paritosh Kumar","orcid":null},"institutions":[{"id":"https://openalex.org/I11793825","display_name":"National Institute of Technology Patna","ror":"https://ror.org/056wyhh33","country_code":"IN","type":"education","lineage":["https://openalex.org/I11793825","https://openalex.org/I4210152752"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Paritosh Kumar","raw_affiliation_strings":["Department of Computer Science & Engineering, National Institute of Technology, Patna, Bihar 800005, India","Department of Computer Science & Engineering, National Institute of Technology, Patna, Bihar 800005, India. Electronic address: Paritosh1590@gmail.com"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science & Engineering, National Institute of Technology, Patna, Bihar 800005, India","institution_ids":["https://openalex.org/I11793825"]},{"raw_affiliation_string":"Department of Computer Science & Engineering, National Institute of Technology, Patna, Bihar 800005, India. Electronic address: Paritosh1590@gmail.com","institution_ids":["https://openalex.org/I11793825"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Paritosh Kumar","orcid":null},"institutions":[{"id":"https://openalex.org/I11793825","display_name":"National Institute of Technology Patna","ror":"https://ror.org/056wyhh33","country_code":"IN","type":"education","lineage":["https://openalex.org/I11793825","https://openalex.org/I4210152752"]}],"countries":["IN"],"is_corresponding":true,"raw_author_name":"Paritosh Kumar","raw_affiliation_strings":["Department of Computer Science & Engineering, National Institute of Technology, Patna, Bihar 800005, India","Department of Computer Science & Engineering, National Institute of Technology, Patna, Bihar 800005, India. Electronic address: Paritosh1590@gmail.com"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science & Engineering, National Institute of Technology, Patna, Bihar 800005, India","institution_ids":["https://openalex.org/I11793825"]},{"raw_affiliation_string":"Department of Computer Science & Engineering, National Institute of Technology, Patna, Bihar 800005, India. Electronic address: Paritosh1590@gmail.com","institution_ids":["https://openalex.org/I11793825"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Akshay Deepak","orcid":null},"institutions":[{"id":"https://openalex.org/I11793825","display_name":"National Institute of Technology Patna","ror":"https://ror.org/056wyhh33","country_code":"IN","type":"education","lineage":["https://openalex.org/I11793825","https://openalex.org/I4210152752"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Akshay Deepak","raw_affiliation_strings":["Department of Computer Science & Engineering, National Institute of Technology, Patna, Bihar 800005, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science & Engineering, National Institute of Technology, Patna, Bihar 800005, India","institution_ids":["https://openalex.org/I11793825"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5136188991","display_name":"Prabhat Kumar","orcid":null},"institutions":[{"id":"https://openalex.org/I11793825","display_name":"National Institute of Technology Patna","ror":"https://ror.org/056wyhh33","country_code":"IN","type":"education","lineage":["https://openalex.org/I11793825","https://openalex.org/I4210152752"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Prabhat Kumar","raw_affiliation_strings":["Department of Computer Science & Engineering, National Institute of Technology, Patna, Bihar 800005, India","Department of Computer Science & Engineering, National Institute of Technology, Patna, Bihar 800005, India. Electronic address: Paritosh1590@gmail.com"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science & Engineering, National Institute of Technology, Patna, Bihar 800005, India","institution_ids":["https://openalex.org/I11793825"]},{"raw_affiliation_string":"Department of Computer Science & Engineering, National Institute of Technology, Patna, Bihar 800005, India. Electronic address: Paritosh1590@gmail.com","institution_ids":["https://openalex.org/I11793825"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Prabhat Kumar","orcid":null},"institutions":[{"id":"https://openalex.org/I11793825","display_name":"National Institute of Technology Patna","ror":"https://ror.org/056wyhh33","country_code":"IN","type":"education","lineage":["https://openalex.org/I11793825","https://openalex.org/I4210152752"]}],"countries":["IN"],"is_corresponding":true,"raw_author_name":"Prabhat Kumar","raw_affiliation_strings":["Department of Computer Science & Engineering, National Institute of Technology, Patna, Bihar 800005, India","Department of Computer Science & Engineering, National Institute of Technology, Patna, Bihar 800005, India. Electronic address: Paritosh1590@gmail.com"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science & Engineering, National Institute of Technology, Patna, Bihar 800005, India","institution_ids":["https://openalex.org/I11793825"]},{"raw_affiliation_string":"Department of Computer Science & Engineering, National Institute of Technology, Patna, Bihar 800005, India. Electronic address: Paritosh1590@gmail.com","institution_ids":["https://openalex.org/I11793825"]}]},{"author_position":"last","author":{"id":null,"display_name":"Ashish Ranjan","orcid":null},"institutions":[{"id":"https://openalex.org/I904090387","display_name":"Global University","ror":"https://ror.org/04frhb927","country_code":"LB","type":"education","lineage":["https://openalex.org/I904090387"]}],"countries":["LB"],"is_corresponding":false,"raw_author_name":"Ashish Ranjan","raw_affiliation_strings":["Department of Computer Science & Engineering, C.V. Raman Global University, Bhubaneswar, Odisha 752054, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science & Engineering, C.V. Raman Global University, Bhubaneswar, Odisha 752054, India","institution_ids":["https://openalex.org/I904090387"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I11793825"],"apc_list":{"value":2960,"currency":"USD","value_usd":2960},"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.47579498,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"124","issue":"Pt 1","first_page":"109125","last_page":"109125"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.41359999775886536,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.41359999775886536,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.12759999930858612,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.042500000447034836,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/residual","display_name":"Residual","score":0.7404999732971191},{"id":"https://openalex.org/keywords/transformer","display_name":"Transformer","score":0.6341999769210815},{"id":"https://openalex.org/keywords/nucleic-acid","display_name":"Nucleic acid","score":0.6126999855041504},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.37950000166893005}],"concepts":[{"id":"https://openalex.org/C155512373","wikidata":"https://www.wikidata.org/wiki/Q287450","display_name":"Residual","level":2,"score":0.7404999732971191},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.664900004863739},{"id":"https://openalex.org/C66322947","wikidata":"https://www.wikidata.org/wiki/Q11658","display_name":"Transformer","level":3,"score":0.6341999769210815},{"id":"https://openalex.org/C24107716","wikidata":"https://www.wikidata.org/wiki/Q123619","display_name":"Nucleic acid","level":2,"score":0.6126999855041504},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4697999954223633},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.37950000166893005},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.28380000591278076},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.27079999446868896},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.26759999990463257},{"id":"https://openalex.org/C183696295","wikidata":"https://www.wikidata.org/wiki/Q2487696","display_name":"Biochemical engineering","level":1,"score":0.24369999766349792}],"mesh":[{"descriptor_ui":"D000098446","descriptor_name":"Autoencoder","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004268","descriptor_name":"DNA-Binding Proteins","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":true},{"descriptor_ui":"D004268","descriptor_name":"DNA-Binding Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D016601","descriptor_name":"RNA-Binding Proteins","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":true},{"descriptor_ui":"D016601","descriptor_name":"RNA-Binding Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1016/j.compbiolchem.2026.109125","is_oa":false,"landing_page_url":"https://doi.org/10.1016/j.compbiolchem.2026.109125","pdf_url":null,"source":{"id":"https://openalex.org/S104924063","display_name":"Computational Biology and Chemistry","issn_l":"1476-9271","issn":["1476-9271","1476-928X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computational Biology and Chemistry","raw_type":"journal-article"},{"id":"pmid:42172806","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/42172806","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computational biology and chemistry","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":33,"referenced_works":["https://openalex.org/W4200031065","https://openalex.org/W4211236594","https://openalex.org/W4317369987","https://openalex.org/W4318542832","https://openalex.org/W4323295279","https://openalex.org/W4367053077","https://openalex.org/W4376128352","https://openalex.org/W4385617339","https://openalex.org/W4386470073","https://openalex.org/W4389326792","https://openalex.org/W4390368810","https://openalex.org/W4390578258","https://openalex.org/W4391291188","https://openalex.org/W4391530558","https://openalex.org/W4392283445","https://openalex.org/W4392622756","https://openalex.org/W4394720053","https://openalex.org/W4399303086","https://openalex.org/W4399498119","https://openalex.org/W4400512202","https://openalex.org/W4400898884","https://openalex.org/W4402924865","https://openalex.org/W4406604038","https://openalex.org/W4407605420","https://openalex.org/W4408729025","https://openalex.org/W4409178037","https://openalex.org/W4410503612","https://openalex.org/W4410949737","https://openalex.org/W4411336530","https://openalex.org/W4411507870","https://openalex.org/W4412583910","https://openalex.org/W4412708806","https://openalex.org/W4414843794"],"related_works":[],"abstract_inverted_index":null,"counts_by_year":[],"updated_date":"2026-08-02T14:50:37.381335","created_date":"2026-05-16T00:00:00"}
