{"id":"https://openalex.org/W7160920182","doi":"https://doi.org/10.1016/j.compbiolchem.2026.109123","title":"IMCP-net: An imbalance-aware multi-modal contrastive framework for metabolic pathway prediction on NAFLD","display_name":"IMCP-net: An imbalance-aware multi-modal contrastive framework for metabolic pathway prediction on NAFLD","publication_year":2026,"publication_date":"2026-05-12","ids":{"openalex":"https://openalex.org/W7160920182","doi":"https://doi.org/10.1016/j.compbiolchem.2026.109123","pmid":"https://pubmed.ncbi.nlm.nih.gov/42160908"},"language":"en","primary_location":{"id":"doi:10.1016/j.compbiolchem.2026.109123","is_oa":false,"landing_page_url":"https://doi.org/10.1016/j.compbiolchem.2026.109123","pdf_url":null,"source":{"id":"https://openalex.org/S104924063","display_name":"Computational Biology and Chemistry","issn_l":"1476-9271","issn":["1476-9271","1476-928X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computational Biology and Chemistry","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5135978789","display_name":"Jing Liu","orcid":null},"institutions":[{"id":"https://openalex.org/I18925743","display_name":"Shanghai University of Sport","ror":"https://ror.org/0056pyw12","country_code":"CN","type":"education","lineage":["https://openalex.org/I18925743"]},{"id":"https://openalex.org/I96733725","display_name":"Shanghai Maritime University","ror":"https://ror.org/04z7qrj66","country_code":"CN","type":"education","lineage":["https://openalex.org/I96733725"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jing Liu","raw_affiliation_strings":["College of Information Engineering, Shanghai Maritime University, Shanghai 201306, China; School of Intelligent Sports Engineering, Shanghai University of Sport, Shanghai 200438, China. Electronic address: jingliu@shmtu.edu.cn"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Information Engineering, Shanghai Maritime University, Shanghai 201306, China; School of Intelligent Sports Engineering, Shanghai University of Sport, Shanghai 200438, China. Electronic address: jingliu@shmtu.edu.cn","institution_ids":["https://openalex.org/I18925743","https://openalex.org/I96733725"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100682000","display_name":"Xinwei Chen","orcid":"https://orcid.org/0000-0002-5563-0742"},"institutions":[{"id":"https://openalex.org/I96733725","display_name":"Shanghai Maritime University","ror":"https://ror.org/04z7qrj66","country_code":"CN","type":"education","lineage":["https://openalex.org/I96733725"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xinwei Chen","raw_affiliation_strings":["College of Information Engineering, Shanghai Maritime University, Shanghai 201306, China. Electronic address: 202430310298@stu.shmtu.edu.cn"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Information Engineering, Shanghai Maritime University, Shanghai 201306, China. Electronic address: 202430310298@stu.shmtu.edu.cn","institution_ids":["https://openalex.org/I96733725"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5135912756","display_name":"Kun Li","orcid":null},"institutions":[{"id":"https://openalex.org/I96733725","display_name":"Shanghai Maritime University","ror":"https://ror.org/04z7qrj66","country_code":"CN","type":"education","lineage":["https://openalex.org/I96733725"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Kun Li","raw_affiliation_strings":["College of Information Engineering, Shanghai Maritime University, Shanghai 201306, China. Electronic address: ikun0125@stu.shmtu.edu.cn"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Information Engineering, Shanghai Maritime University, Shanghai 201306, China. Electronic address: ikun0125@stu.shmtu.edu.cn","institution_ids":["https://openalex.org/I96733725"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083552737","display_name":"Cuiju Luan","orcid":null},"institutions":[{"id":"https://openalex.org/I96733725","display_name":"Shanghai Maritime University","ror":"https://ror.org/04z7qrj66","country_code":"CN","type":"education","lineage":["https://openalex.org/I96733725"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Cuiju Luan","raw_affiliation_strings":["College of Information Engineering, Shanghai Maritime University, Shanghai 201306, China. Electronic address: cjluan@shmtu.edu.cn"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Information Engineering, Shanghai Maritime University, Shanghai 201306, China. Electronic address: cjluan@shmtu.edu.cn","institution_ids":["https://openalex.org/I96733725"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5135938088","display_name":"Xiao Guan","orcid":null},"institutions":[{"id":"https://openalex.org/I148128674","display_name":"University of Shanghai for Science and Technology","ror":"https://ror.org/00ay9v204","country_code":"CN","type":"education","lineage":["https://openalex.org/I148128674"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Xiao Guan","raw_affiliation_strings":["School of Health Science and Engineering, University of Shanghai for Science and Technology, Shanghai 200093, China. Electronic address: gnxo@163.com"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Health Science and Engineering, University of Shanghai for Science and Technology, Shanghai 200093, China. Electronic address: gnxo@163.com","institution_ids":["https://openalex.org/I148128674"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5135938088"],"corresponding_institution_ids":["https://openalex.org/I148128674"],"apc_list":{"value":2960,"currency":"USD","value_usd":2960},"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.59632437,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"124","issue":"Pt 1","first_page":"109123","last_page":"109123"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10351","display_name":"Liver Disease Diagnosis and Treatment","score":0.4253999888896942,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10351","display_name":"Liver Disease Diagnosis and Treatment","score":0.4253999888896942,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.12049999833106995,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13702","display_name":"Machine Learning in Healthcare","score":0.04569999873638153,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/kegg","display_name":"KEGG","score":0.5831999778747559},{"id":"https://openalex.org/keywords/metabolic-pathway","display_name":"Metabolic pathway","score":0.5494999885559082},{"id":"https://openalex.org/keywords/biological-pathway","display_name":"Biological pathway","score":0.38940000534057617},{"id":"https://openalex.org/keywords/weighting","display_name":"Weighting","score":0.3797999918460846},{"id":"https://openalex.org/keywords/steatosis","display_name":"Steatosis","score":0.3131999969482422},{"id":"https://openalex.org/keywords/generalization","display_name":"Generalization","score":0.3093999922275543}],"concepts":[{"id":"https://openalex.org/C152724338","wikidata":"https://www.wikidata.org/wiki/Q909442","display_name":"KEGG","level":5,"score":0.5831999778747559},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5647000074386597},{"id":"https://openalex.org/C192989942","wikidata":"https://www.wikidata.org/wiki/Q68685","display_name":"Metabolic pathway","level":3,"score":0.5494999885559082},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.45649999380111694},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4316999912261963},{"id":"https://openalex.org/C9927688","wikidata":"https://www.wikidata.org/wiki/Q4915012","display_name":"Biological pathway","level":4,"score":0.38940000534057617},{"id":"https://openalex.org/C183115368","wikidata":"https://www.wikidata.org/wiki/Q856577","display_name":"Weighting","level":2,"score":0.3797999918460846},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3398999869823456},{"id":"https://openalex.org/C2776175330","wikidata":"https://www.wikidata.org/wiki/Q1365091","display_name":"Steatosis","level":2,"score":0.3131999969482422},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3100999891757965},{"id":"https://openalex.org/C177148314","wikidata":"https://www.wikidata.org/wiki/Q170084","display_name":"Generalization","level":2,"score":0.3093999922275543},{"id":"https://openalex.org/C99726746","wikidata":"https://www.wikidata.org/wiki/Q906396","display_name":"Chemical space","level":3,"score":0.3068999946117401},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.27630001306533813},{"id":"https://openalex.org/C11804247","wikidata":"https://www.wikidata.org/wiki/Q896177","display_name":"Protein\u2013protein interaction","level":2,"score":0.27230000495910645},{"id":"https://openalex.org/C2780980858","wikidata":"https://www.wikidata.org/wiki/Q110022","display_name":"Dual (grammatical number)","level":2,"score":0.271699994802475},{"id":"https://openalex.org/C104397665","wikidata":"https://www.wikidata.org/wiki/Q860947","display_name":"Proteome","level":2,"score":0.27000001072883606},{"id":"https://openalex.org/C2777735490","wikidata":"https://www.wikidata.org/wiki/Q2351083","display_name":"Metabolic disorder","level":2,"score":0.26330000162124634},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.26179999113082886}],"mesh":[{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D065626","descriptor_name":"Non-alcoholic Fatty Liver Disease","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1016/j.compbiolchem.2026.109123","is_oa":false,"landing_page_url":"https://doi.org/10.1016/j.compbiolchem.2026.109123","pdf_url":null,"source":{"id":"https://openalex.org/S104924063","display_name":"Computational Biology and Chemistry","issn_l":"1476-9271","issn":["1476-9271","1476-928X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computational Biology and Chemistry","raw_type":"journal-article"},{"id":"pmid:42160908","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/42160908","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computational biology and chemistry","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/10","score":0.774610698223114,"display_name":"Reduced inequalities"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":22,"referenced_works":["https://openalex.org/W1985236262","https://openalex.org/W1996662136","https://openalex.org/W2646931131","https://openalex.org/W2767914218","https://openalex.org/W2962914239","https://openalex.org/W2963351448","https://openalex.org/W2964098128","https://openalex.org/W2997158276","https://openalex.org/W3043794400","https://openalex.org/W3106048142","https://openalex.org/W3155686040","https://openalex.org/W3197814387","https://openalex.org/W3211402536","https://openalex.org/W4206447491","https://openalex.org/W4230770774","https://openalex.org/W4282920696","https://openalex.org/W4294216483","https://openalex.org/W4306855786","https://openalex.org/W4362452135","https://openalex.org/W4387409352","https://openalex.org/W4389685061","https://openalex.org/W4390811408"],"related_works":[],"abstract_inverted_index":null,"counts_by_year":[],"updated_date":"2026-06-15T08:34:33.830935","created_date":"2026-05-13T00:00:00"}
