{"id":"https://openalex.org/W7155030969","doi":"https://doi.org/10.1016/j.compbiolchem.2026.109076","title":"DeepStruct: Multi-modal deep learning integrating omics and energy scoring for protein structure prediction in plants","display_name":"DeepStruct: Multi-modal deep learning integrating omics and energy scoring for protein structure prediction in plants","publication_year":2026,"publication_date":"2026-04-21","ids":{"openalex":"https://openalex.org/W7155030969","doi":"https://doi.org/10.1016/j.compbiolchem.2026.109076","pmid":"https://pubmed.ncbi.nlm.nih.gov/42054840"},"language":"en","primary_location":{"id":"doi:10.1016/j.compbiolchem.2026.109076","is_oa":false,"landing_page_url":"https://doi.org/10.1016/j.compbiolchem.2026.109076","pdf_url":null,"source":{"id":"https://openalex.org/S104924063","display_name":"Computational Biology and Chemistry","issn_l":"1476-9271","issn":["1476-9271","1476-928X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computational Biology and Chemistry","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100698394","display_name":"Anurag Tiwari","orcid":"https://orcid.org/0000-0002-4772-6672"},"institutions":[{"id":"https://openalex.org/I162030827","display_name":"Thapar Institute of Engineering & Technology","ror":"https://ror.org/00wdq3744","country_code":"IN","type":"education","lineage":["https://openalex.org/I162030827"]}],"countries":["IN"],"is_corresponding":true,"raw_author_name":"Anurag Tiwari","raw_affiliation_strings":["Thapar Institute of Engineering and Technology, India. Electronic address: anuragtiwari.rs.cse17@itbhu.ac.in"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Thapar Institute of Engineering and Technology, India. Electronic address: anuragtiwari.rs.cse17@itbhu.ac.in","institution_ids":["https://openalex.org/I162030827"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5134183392","display_name":"Rishika Raj","orcid":null},"institutions":[{"id":"https://openalex.org/I223959643","display_name":"Sam Higginbottom Institute of Agriculture","ror":"https://ror.org/05ncvf986","country_code":"IN","type":"government","lineage":["https://openalex.org/I223959643"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Rishika Raj","raw_affiliation_strings":["Jacob Institute of Biotechnology and Bioengineering, Sam Higginbottom University of Agriculture, Technology and Sciences, Prayagraj, Uttar Pradesh 211007, India. Electronic address: 20phbin101@shiats.edu.in"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Jacob Institute of Biotechnology and Bioengineering, Sam Higginbottom University of Agriculture, Technology and Sciences, Prayagraj, Uttar Pradesh 211007, India. Electronic address: 20phbin101@shiats.edu.in","institution_ids":["https://openalex.org/I223959643"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5134183607","display_name":"Manju Khurana","orcid":null},"institutions":[{"id":"https://openalex.org/I162030827","display_name":"Thapar Institute of Engineering & Technology","ror":"https://ror.org/00wdq3744","country_code":"IN","type":"education","lineage":["https://openalex.org/I162030827"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Manju Khurana","raw_affiliation_strings":["Thapar Institute of Engineering and Technology, India. Electronic address: manju.khurana@thapar.edu"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Thapar Institute of Engineering and Technology, India. Electronic address: manju.khurana@thapar.edu","institution_ids":["https://openalex.org/I162030827"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5100698394"],"corresponding_institution_ids":["https://openalex.org/I162030827"],"apc_list":{"value":3320,"currency":"USD","value_usd":3320},"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.3311803,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"124","issue":"Pt 1","first_page":"109076","last_page":"109076"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.25920000672340393,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.25920000672340393,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.1851000040769577,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.1599999964237213,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.753000020980835},{"id":"https://openalex.org/keywords/energy","display_name":"Energy (signal processing)","score":0.4496999979019165},{"id":"https://openalex.org/keywords/protein-structure-prediction","display_name":"Protein structure prediction","score":0.44530001282691956},{"id":"https://openalex.org/keywords/omics","display_name":"Omics","score":0.33480000495910645},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.31869998574256897}],"concepts":[{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.753000020980835},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6855999827384949},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6011000275611877},{"id":"https://openalex.org/C186370098","wikidata":"https://www.wikidata.org/wiki/Q442787","display_name":"Energy (signal processing)","level":2,"score":0.4496999979019165},{"id":"https://openalex.org/C18051474","wikidata":"https://www.wikidata.org/wiki/Q899656","display_name":"Protein structure prediction","level":3,"score":0.44530001282691956},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.4339999854564667},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.40290001034736633},{"id":"https://openalex.org/C157585117","wikidata":"https://www.wikidata.org/wiki/Q158666","display_name":"Omics","level":2,"score":0.33480000495910645},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.31869998574256897},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3140000104904175},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.2935999929904938},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.27950000762939453},{"id":"https://openalex.org/C2988224531","wikidata":"https://www.wikidata.org/wiki/Q20830730","display_name":"Network structure","level":2,"score":0.2540000081062317}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010940","descriptor_name":"Plant Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D010944","descriptor_name":"Plants","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1016/j.compbiolchem.2026.109076","is_oa":false,"landing_page_url":"https://doi.org/10.1016/j.compbiolchem.2026.109076","pdf_url":null,"source":{"id":"https://openalex.org/S104924063","display_name":"Computational Biology and Chemistry","issn_l":"1476-9271","issn":["1476-9271","1476-928X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computational Biology and Chemistry","raw_type":"journal-article"},{"id":"pmid:42054840","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/42054840","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computational biology and chemistry","raw_type":"Journal Article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":48,"referenced_works":["https://openalex.org/W2011657487","https://openalex.org/W2055043387","https://openalex.org/W2094458603","https://openalex.org/W2102278945","https://openalex.org/W2104005232","https://openalex.org/W2107915254","https://openalex.org/W2110065044","https://openalex.org/W2120902911","https://openalex.org/W2124676809","https://openalex.org/W2131271579","https://openalex.org/W2134526812","https://openalex.org/W2143210482","https://openalex.org/W2151831732","https://openalex.org/W2165356360","https://openalex.org/W2179438025","https://openalex.org/W2901218091","https://openalex.org/W2924957326","https://openalex.org/W2945297971","https://openalex.org/W2949867299","https://openalex.org/W2951934944","https://openalex.org/W2968494487","https://openalex.org/W2987090428","https://openalex.org/W2999044305","https://openalex.org/W3042744518","https://openalex.org/W3112376646","https://openalex.org/W3146944767","https://openalex.org/W3177828909","https://openalex.org/W4206259761","https://openalex.org/W4285816840","https://openalex.org/W4300861364","https://openalex.org/W4323309784","https://openalex.org/W4327550249","https://openalex.org/W4383957026","https://openalex.org/W4385415989","https://openalex.org/W4385740455","https://openalex.org/W4391338754","https://openalex.org/W4392155415","https://openalex.org/W4392371710","https://openalex.org/W4393100304","https://openalex.org/W4399072963","https://openalex.org/W4400451184","https://openalex.org/W4400616900","https://openalex.org/W4400985732","https://openalex.org/W4404968855","https://openalex.org/W4410370348","https://openalex.org/W4410706171","https://openalex.org/W4412441007","https://openalex.org/W4413801404"],"related_works":[],"abstract_inverted_index":null,"counts_by_year":[],"updated_date":"2026-08-21T09:56:20.448147","created_date":"2026-04-22T00:00:00"}
