{"id":"https://openalex.org/W7154606554","doi":"https://doi.org/10.1016/j.compbiolchem.2026.109073","title":"Uncovering hidden biomarkers in systemic lupus erythematosus through mqTrans analysis","display_name":"Uncovering hidden biomarkers in systemic lupus erythematosus through mqTrans analysis","publication_year":2026,"publication_date":"2026-04-17","ids":{"openalex":"https://openalex.org/W7154606554","doi":"https://doi.org/10.1016/j.compbiolchem.2026.109073","pmid":"https://pubmed.ncbi.nlm.nih.gov/42068631"},"language":"en","primary_location":{"id":"doi:10.1016/j.compbiolchem.2026.109073","is_oa":true,"landing_page_url":"https://doi.org/10.1016/j.compbiolchem.2026.109073","pdf_url":null,"source":{"id":"https://openalex.org/S104924063","display_name":"Computational Biology and Chemistry","issn_l":"1476-9271","issn":["1476-9271","1476-928X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computational Biology and Chemistry","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://doi.org/10.1016/j.compbiolchem.2026.109073","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5133818140","display_name":"Tao You","orcid":null},"institutions":[{"id":"https://openalex.org/I4210109300","display_name":"Jilin City Central Hospital","ror":"https://ror.org/01y87aw49","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210109300"]},{"id":"https://openalex.org/I4210125838","display_name":"Jilin University of Chemical Technology","ror":"https://ror.org/03bvz5p76","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210125838"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Tao You","raw_affiliation_strings":["Jilin City Hospital of Chemical Industry, Jilin 130000, PR China; School of Artificial Intelligence, Jilin University of Chemical Technology, Jilin, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Jilin City Hospital of Chemical Industry, Jilin 130000, PR China; School of Artificial Intelligence, Jilin University of Chemical Technology, Jilin, China","institution_ids":["https://openalex.org/I4210109300","https://openalex.org/I4210125838"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5133743298","display_name":"Meng Li","orcid":null},"institutions":[{"id":"https://openalex.org/I4210125838","display_name":"Jilin University of Chemical Technology","ror":"https://ror.org/03bvz5p76","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210125838"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Meng Li","raw_affiliation_strings":["School of Artificial Intelligence, Jilin University of Chemical Technology, Jilin, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Artificial Intelligence, Jilin University of Chemical Technology, Jilin, China","institution_ids":["https://openalex.org/I4210125838"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5133730785","display_name":"Bo Han","orcid":null},"institutions":[{"id":"https://openalex.org/I4210109300","display_name":"Jilin City Central Hospital","ror":"https://ror.org/01y87aw49","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210109300"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Bo Han","raw_affiliation_strings":["Jilin City Hospital of Chemical Industry, Jilin 130000, PR China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Jilin City Hospital of Chemical Industry, Jilin 130000, PR China","institution_ids":["https://openalex.org/I4210109300"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100433248","display_name":"Jun Zhang","orcid":"https://orcid.org/0000-0003-1113-6264"},"institutions":[{"id":"https://openalex.org/I4210109300","display_name":"Jilin City Central Hospital","ror":"https://ror.org/01y87aw49","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210109300"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jun Zhang","raw_affiliation_strings":["Jilin City Hospital of Chemical Industry, Jilin 130000, PR China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Jilin City Hospital of Chemical Industry, Jilin 130000, PR China","institution_ids":["https://openalex.org/I4210109300"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004568087","display_name":"Ruihao Xin","orcid":"https://orcid.org/0000-0003-2092-3390"},"institutions":[{"id":"https://openalex.org/I4210125838","display_name":"Jilin University of Chemical Technology","ror":"https://ror.org/03bvz5p76","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210125838"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Ruihao Xin","raw_affiliation_strings":["School of Electrical and Control Engineering, Jilin University of Chemical Technology, Jilin 130000, PR China. Electronic address: xrhcclg@163.com"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Electrical and Control Engineering, Jilin University of Chemical Technology, Jilin 130000, PR China. Electronic address: xrhcclg@163.com","institution_ids":["https://openalex.org/I4210125838"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100723499","display_name":"Xin Feng","orcid":"https://orcid.org/0000-0002-0016-2507"},"institutions":[{"id":"https://openalex.org/I4210125838","display_name":"Jilin University of Chemical Technology","ror":"https://ror.org/03bvz5p76","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210125838"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Xin Feng","raw_affiliation_strings":["School of Artificial Intelligence, Jilin University of Chemical Technology, Jilin, China. Electronic address: fengxin@jluct.edu.cn"],"raw_orcid":"https://orcid.org/0000-0002-0016-2507","affiliations":[{"raw_affiliation_string":"School of Artificial Intelligence, Jilin University of Chemical Technology, Jilin, China. Electronic address: fengxin@jluct.edu.cn","institution_ids":["https://openalex.org/I4210125838"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5004568087","https://openalex.org/A5100723499"],"corresponding_institution_ids":["https://openalex.org/I4210125838"],"apc_list":{"value":2960,"currency":"USD","value_usd":2960},"apc_paid":{"value":2960,"currency":"USD","value_usd":2960},"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.44824541,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"124","issue":"Pt 1","first_page":"109073","last_page":"109073"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10308","display_name":"Systemic Lupus Erythematosus Research","score":0.8180000185966492,"subfield":{"id":"https://openalex.org/subfields/2745","display_name":"Rheumatology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10308","display_name":"Systemic Lupus Erythematosus Research","score":0.8180000185966492,"subfield":{"id":"https://openalex.org/subfields/2745","display_name":"Rheumatology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T12867","display_name":"Advanced Biosensing Techniques and Applications","score":0.033799998462200165,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.023900000378489494,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/lupus-erythematosus","display_name":"Lupus erythematosus","score":0.39739999175071716},{"id":"https://openalex.org/keywords/biomarker","display_name":"Biomarker","score":0.3919000029563904},{"id":"https://openalex.org/keywords/medline","display_name":"MEDLINE","score":0.31189998984336853},{"id":"https://openalex.org/keywords/autoantibody","display_name":"Autoantibody","score":0.2957000136375427},{"id":"https://openalex.org/keywords/antibody","display_name":"Antibody","score":0.2809999883174896},{"id":"https://openalex.org/keywords/autoimmune-disease","display_name":"Autoimmune disease","score":0.2797999978065491}],"concepts":[{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.7186999917030334},{"id":"https://openalex.org/C203014093","wikidata":"https://www.wikidata.org/wiki/Q101929","display_name":"Immunology","level":1,"score":0.4221000075340271},{"id":"https://openalex.org/C2775915377","wikidata":"https://www.wikidata.org/wiki/Q188297","display_name":"Lupus erythematosus","level":3,"score":0.39739999175071716},{"id":"https://openalex.org/C2781197716","wikidata":"https://www.wikidata.org/wiki/Q864574","display_name":"Biomarker","level":2,"score":0.3919000029563904},{"id":"https://openalex.org/C2779473830","wikidata":"https://www.wikidata.org/wiki/Q1540899","display_name":"MEDLINE","level":2,"score":0.31189998984336853},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.31049999594688416},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.30570000410079956},{"id":"https://openalex.org/C163764329","wikidata":"https://www.wikidata.org/wiki/Q785022","display_name":"Autoantibody","level":3,"score":0.2957000136375427},{"id":"https://openalex.org/C159654299","wikidata":"https://www.wikidata.org/wiki/Q79460","display_name":"Antibody","level":2,"score":0.2809999883174896},{"id":"https://openalex.org/C2779075594","wikidata":"https://www.wikidata.org/wiki/Q8084905","display_name":"Autoimmune disease","level":3,"score":0.2797999978065491},{"id":"https://openalex.org/C2776670291","wikidata":"https://www.wikidata.org/wiki/Q1779300","display_name":"Connective tissue disease","level":4,"score":0.25949999690055847},{"id":"https://openalex.org/C2776912625","wikidata":"https://www.wikidata.org/wiki/Q1485","display_name":"Systemic lupus erythematosus","level":3,"score":0.2578999996185303},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.25679999589920044}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008180","descriptor_name":"Lupus Erythematosus, Systemic","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":true},{"descriptor_ui":"D008180","descriptor_name":"Lupus Erythematosus, Systemic","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015415","descriptor_name":"Biomarkers","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D015415","descriptor_name":"Biomarkers","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D017306","descriptor_name":"Annexin A2","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1016/j.compbiolchem.2026.109073","is_oa":true,"landing_page_url":"https://doi.org/10.1016/j.compbiolchem.2026.109073","pdf_url":null,"source":{"id":"https://openalex.org/S104924063","display_name":"Computational Biology and Chemistry","issn_l":"1476-9271","issn":["1476-9271","1476-928X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computational Biology and Chemistry","raw_type":"journal-article"},{"id":"pmid:42068631","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/42068631","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computational biology and chemistry","raw_type":null}],"best_oa_location":{"id":"doi:10.1016/j.compbiolchem.2026.109073","is_oa":true,"landing_page_url":"https://doi.org/10.1016/j.compbiolchem.2026.109073","pdf_url":null,"source":{"id":"https://openalex.org/S104924063","display_name":"Computational Biology and Chemistry","issn_l":"1476-9271","issn":["1476-9271","1476-928X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computational Biology and Chemistry","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":32,"referenced_works":["https://openalex.org/W1519128746","https://openalex.org/W1944656365","https://openalex.org/W1985680740","https://openalex.org/W1987022526","https://openalex.org/W1996340836","https://openalex.org/W2036095604","https://openalex.org/W2042347541","https://openalex.org/W2049537372","https://openalex.org/W2056248535","https://openalex.org/W2062703398","https://openalex.org/W2087785715","https://openalex.org/W2102473929","https://openalex.org/W2106547200","https://openalex.org/W2111419566","https://openalex.org/W2118258530","https://openalex.org/W2142145420","https://openalex.org/W2808234087","https://openalex.org/W2809646241","https://openalex.org/W2901509748","https://openalex.org/W2902176542","https://openalex.org/W2927871970","https://openalex.org/W2940644855","https://openalex.org/W2975287808","https://openalex.org/W2976739141","https://openalex.org/W2996290697","https://openalex.org/W3013409199","https://openalex.org/W3034838301","https://openalex.org/W3167447393","https://openalex.org/W3170494874","https://openalex.org/W3186792524","https://openalex.org/W3204825004","https://openalex.org/W4220800236"],"related_works":[],"abstract_inverted_index":{"Transcriptomic":[0],"data":[1],"is":[2,30],"a":[3,90,116],"valuable":[4],"resource":[5],"in":[6,24,56,99],"precision":[7],"medicine,":[8],"providing":[9],"crucial":[10],"insights":[11],"into":[12],"disease":[13],"diagnosis":[14],"and":[15,81,88,122,135,144],"treatment.":[16],"Differential":[17],"regulation":[18],"relationship":[19],"analysis,":[20],"focusing":[21],"on":[22],"changes":[23,55],"regulatory":[25],"relationships":[26,132],"between":[27,76,133],"different":[28],"phenotypes,":[29],"an":[31,77],"essential":[32,154],"research":[33],"direction":[34],"to":[35],"elucidate":[36],"the":[37,74,85,100,125,140],"mechanisms":[38],"of":[39,119],"complex":[40],"molecular":[41],"networks.":[42],"However,":[43],"many":[44],"existing":[45],"studies":[46],"overlook":[47],"associations":[48],"with":[49,95],"non-differential":[50],"genes":[51,134],"that":[52,156],"exhibit":[53],"quantitative":[54],"phenotypes.":[57],"This":[58],"study":[59],"analyzes":[60],"transcriptomic":[61,102],"features":[62,68,94],"by":[63],"examining":[64],"correlations":[65],"among":[66],"high-dimensional":[67],"through":[69],"feature":[70,87],"construction.":[71],"We":[72],"define":[73],"difference":[75],"mRNA":[78],"feature's":[79],"predicted":[80],"actual":[82],"expression":[83,98,127,159],"as":[84,111],"mqTrans":[86,150],"build":[89],"predictive":[91],"model.":[92],"Three":[93],"no":[96],"differential":[97,158],"original":[101,126],"values":[103],"across":[104],"three":[105],"independent":[106],"SLE":[107],"datasets":[108],"were":[109],"identified":[110],"latent":[112,120,141],"biomarkers.":[113],"By":[114],"constructing":[115],"PPI":[117],"network":[118],"biomarkers":[121,123,155],"at":[124],"levels,":[128],"we":[129],"explore":[130],"interactive":[131],"discover":[136],"functional":[137],"interactions":[138],"involving":[139],"biomarker":[142],"ANXA2":[143],"seven":[145],"hub":[146],"genes.":[147],"In":[148],"conclusion,":[149],"analysis":[151,160],"can":[152],"uncover":[153],"traditional":[157],"often":[161],"misses.":[162]},"counts_by_year":[],"updated_date":"2026-06-19T15:47:20.252518","created_date":"2026-04-17T00:00:00"}
