{"id":"https://openalex.org/W7154741643","doi":"https://doi.org/10.1016/j.compbiolchem.2026.109069","title":"A multi-modal drug\u2013gene interaction prediction framework for recommending drugs targeting epigenetic cancer biomarkers","display_name":"A multi-modal drug\u2013gene interaction prediction framework for recommending drugs targeting epigenetic cancer biomarkers","publication_year":2026,"publication_date":"2026-04-17","ids":{"openalex":"https://openalex.org/W7154741643","doi":"https://doi.org/10.1016/j.compbiolchem.2026.109069","pmid":"https://pubmed.ncbi.nlm.nih.gov/42001824"},"language":"en","primary_location":{"id":"doi:10.1016/j.compbiolchem.2026.109069","is_oa":false,"landing_page_url":"https://doi.org/10.1016/j.compbiolchem.2026.109069","pdf_url":null,"source":{"id":"https://openalex.org/S104924063","display_name":"Computational Biology and Chemistry","issn_l":"1476-9271","issn":["1476-9271","1476-928X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computational Biology and Chemistry","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5133877708","display_name":"V.U. Panchami","orcid":null},"institutions":[{"id":"https://openalex.org/I133769559","display_name":"Government Medical College","ror":"https://ror.org/016je1253","country_code":"IN","type":"education","lineage":["https://openalex.org/I133769559"]},{"id":"https://openalex.org/I2800816844","display_name":"General Hospital Ernakulam","ror":"https://ror.org/03nyhx379","country_code":"IN","type":"healthcare","lineage":["https://openalex.org/I2800816844"]},{"id":"https://openalex.org/I3129367976","display_name":"APJ Abdul Kalam Technological University","ror":"https://ror.org/04yn30r61","country_code":"IN","type":"education","lineage":["https://openalex.org/I3129367976"]}],"countries":["IN"],"is_corresponding":true,"raw_author_name":"Panchami V.U.","raw_affiliation_strings":["APJ Abdul Kalam Technological University, 695016, Kerala, India","Adi Shankara Institute of Engineering and Technology, Ernakulam, 683574, Kerala, India","Government Engineering College Thrissur, 680 009, Kerala, India"],"raw_orcid":"https://orcid.org/0009-0008-5038-0263","affiliations":[{"raw_affiliation_string":"APJ Abdul Kalam Technological University, 695016, Kerala, India","institution_ids":["https://openalex.org/I3129367976"]},{"raw_affiliation_string":"Adi Shankara Institute of Engineering and Technology, Ernakulam, 683574, Kerala, India","institution_ids":["https://openalex.org/I2800816844"]},{"raw_affiliation_string":"Government Engineering College Thrissur, 680 009, Kerala, India","institution_ids":["https://openalex.org/I133769559"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036046709","display_name":"T.I. Manish","orcid":null},"institutions":[{"id":"https://openalex.org/I2800816844","display_name":"General Hospital Ernakulam","ror":"https://ror.org/03nyhx379","country_code":"IN","type":"healthcare","lineage":["https://openalex.org/I2800816844"]},{"id":"https://openalex.org/I3129367976","display_name":"APJ Abdul Kalam Technological University","ror":"https://ror.org/04yn30r61","country_code":"IN","type":"education","lineage":["https://openalex.org/I3129367976"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Manish T.I.","raw_affiliation_strings":["APJ Abdul Kalam Technological University, 695016, Kerala, India","SCMS School of Engineering and Technology, Ernakulam, 683576, Kerala, India"],"raw_orcid":"https://orcid.org/0000-0002-1347-5510","affiliations":[{"raw_affiliation_string":"APJ Abdul Kalam Technological University, 695016, Kerala, India","institution_ids":["https://openalex.org/I3129367976"]},{"raw_affiliation_string":"SCMS School of Engineering and Technology, Ernakulam, 683576, Kerala, India","institution_ids":["https://openalex.org/I2800816844"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5121104070","display_name":"K. K. Manesh","orcid":null},"institutions":[{"id":"https://openalex.org/I133769559","display_name":"Government Medical College","ror":"https://ror.org/016je1253","country_code":"IN","type":"education","lineage":["https://openalex.org/I133769559"]},{"id":"https://openalex.org/I3129367976","display_name":"APJ Abdul Kalam Technological University","ror":"https://ror.org/04yn30r61","country_code":"IN","type":"education","lineage":["https://openalex.org/I3129367976"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Manesh K.K.","raw_affiliation_strings":["APJ Abdul Kalam Technological University, 695016, Kerala, India","Government Engineering College Thrissur, 680 009, Kerala, India"],"raw_orcid":"https://orcid.org/0000-0002-0788-5046","affiliations":[{"raw_affiliation_string":"APJ Abdul Kalam Technological University, 695016, Kerala, India","institution_ids":["https://openalex.org/I3129367976"]},{"raw_affiliation_string":"Government Engineering College Thrissur, 680 009, Kerala, India","institution_ids":["https://openalex.org/I133769559"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5133877708"],"corresponding_institution_ids":["https://openalex.org/I133769559","https://openalex.org/I2800816844","https://openalex.org/I3129367976"],"apc_list":{"value":2960,"currency":"USD","value_usd":2960},"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.51495588,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"124","issue":"Pt 1","first_page":"109069","last_page":"109069"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.7982000112533569,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.7982000112533569,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.04540000110864639,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.02449999935925007,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/epigenetics","display_name":"Epigenetics","score":0.5490000247955322},{"id":"https://openalex.org/keywords/biomarker","display_name":"Biomarker","score":0.4860000014305115},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.42149999737739563},{"id":"https://openalex.org/keywords/precision-medicine","display_name":"Precision medicine","score":0.3409000039100647},{"id":"https://openalex.org/keywords/protein\u2013protein-interaction","display_name":"Protein\u2013protein interaction","score":0.3131999969482422},{"id":"https://openalex.org/keywords/cancer-biomarkers","display_name":"Cancer biomarkers","score":0.30329999327659607}],"concepts":[{"id":"https://openalex.org/C41091548","wikidata":"https://www.wikidata.org/wiki/Q26939","display_name":"Epigenetics","level":3,"score":0.5490000247955322},{"id":"https://openalex.org/C2781197716","wikidata":"https://www.wikidata.org/wiki/Q864574","display_name":"Biomarker","level":2,"score":0.4860000014305115},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.47530001401901245},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.46630001068115234},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.42149999737739563},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.367000013589859},{"id":"https://openalex.org/C163763905","wikidata":"https://www.wikidata.org/wiki/Q17075943","display_name":"Precision medicine","level":2,"score":0.3409000039100647},{"id":"https://openalex.org/C502942594","wikidata":"https://www.wikidata.org/wiki/Q3421914","display_name":"Cancer research","level":1,"score":0.31679999828338623},{"id":"https://openalex.org/C11804247","wikidata":"https://www.wikidata.org/wiki/Q896177","display_name":"Protein\u2013protein interaction","level":2,"score":0.3131999969482422},{"id":"https://openalex.org/C2777002142","wikidata":"https://www.wikidata.org/wiki/Q5031432","display_name":"Cancer biomarkers","level":3,"score":0.30329999327659607},{"id":"https://openalex.org/C3020340455","wikidata":"https://www.wikidata.org/wiki/Q974135","display_name":"Cancer drugs","level":3,"score":0.30059999227523804},{"id":"https://openalex.org/C124535831","wikidata":"https://www.wikidata.org/wiki/Q4915074","display_name":"Biomarker discovery","level":4,"score":0.28130000829696655},{"id":"https://openalex.org/C143998085","wikidata":"https://www.wikidata.org/wiki/Q162555","display_name":"Oncology","level":1,"score":0.27630001306533813},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.2728999853134155},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.2653999924659729},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.25189998745918274}],"mesh":[{"descriptor_ui":"D000098422","descriptor_name":"Graph Neural Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000970","descriptor_name":"Antineoplastic Agents","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":true},{"descriptor_ui":"D000970","descriptor_name":"Antineoplastic Agents","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000188","qualifier_name":"drug therapy","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D014408","descriptor_name":"Biomarkers, Tumor","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D044127","descriptor_name":"Epigenesis, Genetic","qualifier_ui":"Q000187","qualifier_name":"drug effects","is_major_topic":true},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1016/j.compbiolchem.2026.109069","is_oa":false,"landing_page_url":"https://doi.org/10.1016/j.compbiolchem.2026.109069","pdf_url":null,"source":{"id":"https://openalex.org/S104924063","display_name":"Computational Biology and Chemistry","issn_l":"1476-9271","issn":["1476-9271","1476-928X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computational Biology and Chemistry","raw_type":"journal-article"},{"id":"pmid:42001824","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/42001824","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computational biology and chemistry","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Good health and well-being","score":0.5102371573448181,"id":"https://metadata.un.org/sdg/3"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":33,"referenced_works":["https://openalex.org/W1971106435","https://openalex.org/W2079039801","https://openalex.org/W2096541451","https://openalex.org/W2184981123","https://openalex.org/W2892250154","https://openalex.org/W2949676527","https://openalex.org/W3028589594","https://openalex.org/W3088915929","https://openalex.org/W3096561213","https://openalex.org/W3119708221","https://openalex.org/W3138896806","https://openalex.org/W3206585172","https://openalex.org/W3215894515","https://openalex.org/W3217751816","https://openalex.org/W4200547951","https://openalex.org/W4256367410","https://openalex.org/W4310458612","https://openalex.org/W4381332369","https://openalex.org/W4387840870","https://openalex.org/W4388305006","https://openalex.org/W4388615774","https://openalex.org/W4388615780","https://openalex.org/W4389828698","https://openalex.org/W4391776289","https://openalex.org/W4391818714","https://openalex.org/W4392913700","https://openalex.org/W4399432646","https://openalex.org/W4400117988","https://openalex.org/W4402678917","https://openalex.org/W4404726291","https://openalex.org/W4404830085","https://openalex.org/W4407153003","https://openalex.org/W4410138743"],"related_works":[],"abstract_inverted_index":null,"counts_by_year":[],"updated_date":"2026-06-20T22:02:38.213706","created_date":"2026-04-18T00:00:00"}
