{"id":"https://openalex.org/W7154986644","doi":"https://doi.org/10.1016/j.compbiolchem.2026.109063","title":"Deeptaxim: Comprehensive classification analysis for taxonomic datasets using image-based deep-learning models","display_name":"Deeptaxim: Comprehensive classification analysis for taxonomic datasets using image-based deep-learning models","publication_year":2026,"publication_date":"2026-04-20","ids":{"openalex":"https://openalex.org/W7154986644","doi":"https://doi.org/10.1016/j.compbiolchem.2026.109063","pmid":"https://pubmed.ncbi.nlm.nih.gov/42025264"},"language":"en","primary_location":{"id":"doi:10.1016/j.compbiolchem.2026.109063","is_oa":false,"landing_page_url":"https://doi.org/10.1016/j.compbiolchem.2026.109063","pdf_url":null,"source":{"id":"https://openalex.org/S104924063","display_name":"Computational Biology and Chemistry","issn_l":"1476-9271","issn":["1476-9271","1476-928X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computational Biology and Chemistry","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5093835633","display_name":"U. G\u00fclfem Elg\u00fcn \u00c7iftcio\u011flu","orcid":"https://orcid.org/0000-0003-4836-237X"},"institutions":[{"id":"https://openalex.org/I59738393","display_name":"Gaziantep University","ror":"https://ror.org/020vvc407","country_code":"TR","type":"education","lineage":["https://openalex.org/I59738393"]}],"countries":["TR"],"is_corresponding":true,"raw_author_name":"U. Gulfem Elgun Ciftcioglu","raw_affiliation_strings":["Department of Computer Engineering, Gaziantep University, Gaziantep, Turkey; Department of Computer Engineering, Erciyes University, Kayseri, Turkey. Electronic address: ugulfem@gaziantep.edu.tr"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Engineering, Gaziantep University, Gaziantep, Turkey; Department of Computer Engineering, Erciyes University, Kayseri, Turkey. Electronic address: ugulfem@gaziantep.edu.tr","institution_ids":["https://openalex.org/I59738393"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5027892983","display_name":"\u00d6zkan Ufuk Nalbanto\u011flu","orcid":"https://orcid.org/0000-0002-2278-7786"},"institutions":[{"id":"https://openalex.org/I132257509","display_name":"Izmir University","ror":"https://ror.org/013h3xr51","country_code":"TR","type":"education","lineage":["https://openalex.org/I132257509"]},{"id":"https://openalex.org/I193615760","display_name":"Dokuz Eyl\u00fcl University","ror":"https://ror.org/00dbd8b73","country_code":"TR","type":"education","lineage":["https://openalex.org/I193615760"]}],"countries":["TR"],"is_corresponding":false,"raw_author_name":"O. Ufuk Nalbantoglu","raw_affiliation_strings":["Department of Computer Engineering, Dokuz Eylul University, Izmir, Turkey; Izmir Biomedicine and Genome Center, Izmir, Turkey"],"raw_orcid":"https://orcid.org/0000-0002-2278-7786","affiliations":[{"raw_affiliation_string":"Department of Computer Engineering, Dokuz Eylul University, Izmir, Turkey; Izmir Biomedicine and Genome Center, Izmir, Turkey","institution_ids":["https://openalex.org/I193615760","https://openalex.org/I132257509"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5093835633"],"corresponding_institution_ids":["https://openalex.org/I59738393"],"apc_list":{"value":2960,"currency":"USD","value_usd":2960},"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.58986928,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"124","issue":"Pt 1","first_page":"109063","last_page":"109063"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10895","display_name":"Species Distribution and Climate Change","score":0.24729999899864197,"subfield":{"id":"https://openalex.org/subfields/2302","display_name":"Ecological Modeling"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10895","display_name":"Species Distribution and Climate Change","score":0.24729999899864197,"subfield":{"id":"https://openalex.org/subfields/2302","display_name":"Ecological Modeling"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.2313999980688095,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10862","display_name":"AI in cancer detection","score":0.04390000179409981,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biological-classification","display_name":"Biological classification","score":0.3946000039577484},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.3637999892234802},{"id":"https://openalex.org/keywords/taxonomy","display_name":"Taxonomy (biology)","score":0.28029999136924744},{"id":"https://openalex.org/keywords/key","display_name":"Key (lock)","score":0.20569999516010284}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5992000102996826},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.47049999237060547},{"id":"https://openalex.org/C48702757","wikidata":"https://www.wikidata.org/wiki/Q8269924","display_name":"Biological classification","level":2,"score":0.3946000039577484},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.36419999599456787},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.3637999892234802},{"id":"https://openalex.org/C58642233","wikidata":"https://www.wikidata.org/wiki/Q8269924","display_name":"Taxonomy (biology)","level":2,"score":0.28029999136924744},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.2702000141143799},{"id":"https://openalex.org/C26517878","wikidata":"https://www.wikidata.org/wiki/Q228039","display_name":"Key (lock)","level":2,"score":0.20569999516010284},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.1987999975681305},{"id":"https://openalex.org/C12426560","wikidata":"https://www.wikidata.org/wiki/Q189569","display_name":"Basis (linear algebra)","level":2,"score":0.19679999351501465}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000098410","descriptor_name":"Transfer Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000098415","descriptor_name":"Convolutional Neural Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000098429","descriptor_name":"Classification Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000098446","descriptor_name":"Autoencoder","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1016/j.compbiolchem.2026.109063","is_oa":false,"landing_page_url":"https://doi.org/10.1016/j.compbiolchem.2026.109063","pdf_url":null,"source":{"id":"https://openalex.org/S104924063","display_name":"Computational Biology and Chemistry","issn_l":"1476-9271","issn":["1476-9271","1476-928X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computational Biology and Chemistry","raw_type":"journal-article"},{"id":"pmid:42025264","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/42025264","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computational biology and chemistry","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":40,"referenced_works":["https://openalex.org/W1972910328","https://openalex.org/W1978709058","https://openalex.org/W2001561488","https://openalex.org/W2012490955","https://openalex.org/W2012606594","https://openalex.org/W2020398205","https://openalex.org/W2083176215","https://openalex.org/W2116846792","https://openalex.org/W2131186249","https://openalex.org/W2133856765","https://openalex.org/W2149952321","https://openalex.org/W2178425989","https://openalex.org/W2377027462","https://openalex.org/W2461853012","https://openalex.org/W2473355215","https://openalex.org/W2776445964","https://openalex.org/W2903406988","https://openalex.org/W2905357150","https://openalex.org/W2910494796","https://openalex.org/W2919115771","https://openalex.org/W2927453907","https://openalex.org/W2949004447","https://openalex.org/W2985331920","https://openalex.org/W3008674746","https://openalex.org/W3014810983","https://openalex.org/W3024771599","https://openalex.org/W3087332590","https://openalex.org/W3128912982","https://openalex.org/W3138964605","https://openalex.org/W3152967916","https://openalex.org/W3159504416","https://openalex.org/W3175203932","https://openalex.org/W4292451876","https://openalex.org/W4292969247","https://openalex.org/W4295921704","https://openalex.org/W4328126040","https://openalex.org/W4360956605","https://openalex.org/W4380551368","https://openalex.org/W4381598422","https://openalex.org/W4401945686"],"related_works":[],"abstract_inverted_index":null,"counts_by_year":[],"updated_date":"2026-06-19T15:47:20.252518","created_date":"2026-04-21T00:00:00"}
