{"id":"https://openalex.org/W7154217766","doi":"https://doi.org/10.1016/j.compbiolchem.2026.109049","title":"BrainShuttle-ESM: A Multi-Stage Transformer Architecture for Predicting Blood\u2013Brain Barrier\u2013Penetrating Short Peptides","display_name":"BrainShuttle-ESM: A Multi-Stage Transformer Architecture for Predicting Blood\u2013Brain Barrier\u2013Penetrating Short Peptides","publication_year":2026,"publication_date":"2026-04-14","ids":{"openalex":"https://openalex.org/W7154217766","doi":"https://doi.org/10.1016/j.compbiolchem.2026.109049","pmid":"https://pubmed.ncbi.nlm.nih.gov/41985274"},"language":"en","primary_location":{"id":"doi:10.1016/j.compbiolchem.2026.109049","is_oa":false,"landing_page_url":"https://doi.org/10.1016/j.compbiolchem.2026.109049","pdf_url":null,"source":{"id":"https://openalex.org/S104924063","display_name":"Computational Biology and Chemistry","issn_l":"1476-9271","issn":["1476-9271","1476-928X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computational Biology and Chemistry","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5133598364","display_name":"Sathiyajith J.N.","orcid":"https://orcid.org/0009-0007-7508-5431"},"institutions":[{"id":"https://openalex.org/I81556334","display_name":"Amrita Vishwa Vidyapeetham","ror":"https://ror.org/03am10p12","country_code":"IN","type":"education","lineage":["https://openalex.org/I81556334"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Sathiyajith J.N.","raw_affiliation_strings":["Amrita School of Artificial Intelligence, Coimbatore, Amrita Vishwa Vidyapeetham, India"],"raw_orcid":"https://orcid.org/0009-0007-7508-5431","affiliations":[{"raw_affiliation_string":"Amrita School of Artificial Intelligence, Coimbatore, Amrita Vishwa Vidyapeetham, India","institution_ids":["https://openalex.org/I81556334"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5133560928","display_name":"Gopi Mohan C.","orcid":null},"institutions":[{"id":"https://openalex.org/I81556334","display_name":"Amrita Vishwa Vidyapeetham","ror":"https://ror.org/03am10p12","country_code":"IN","type":"education","lineage":["https://openalex.org/I81556334"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Gopi Mohan C.","raw_affiliation_strings":["Amrita School of Nanosciences and Molecular Medicine, Amrita Vishwa Vidyapeetham, Kochi, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Amrita School of Nanosciences and Molecular Medicine, Amrita Vishwa Vidyapeetham, Kochi, India","institution_ids":["https://openalex.org/I81556334"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5030012648","display_name":"Pratiti Bhadra","orcid":"https://orcid.org/0000-0002-2200-3793"},"institutions":[{"id":"https://openalex.org/I81556334","display_name":"Amrita Vishwa Vidyapeetham","ror":"https://ror.org/03am10p12","country_code":"IN","type":"education","lineage":["https://openalex.org/I81556334"]}],"countries":["IN"],"is_corresponding":true,"raw_author_name":"Pratiti Bhadra","raw_affiliation_strings":["Amrita School of Artificial Intelligence, Coimbatore, Amrita Vishwa Vidyapeetham, India. Electronic address: b_pratiti@cb.amrita.edu"],"raw_orcid":"https://orcid.org/0000-0002-2200-3793","affiliations":[{"raw_affiliation_string":"Amrita School of Artificial Intelligence, Coimbatore, Amrita Vishwa Vidyapeetham, India. Electronic address: b_pratiti@cb.amrita.edu","institution_ids":["https://openalex.org/I81556334"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5030012648"],"corresponding_institution_ids":["https://openalex.org/I81556334"],"apc_list":{"value":2960,"currency":"USD","value_usd":2960},"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.82688796,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"123","issue":null,"first_page":"109049","last_page":"109049"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10725","display_name":"RNA Interference and Gene Delivery","score":0.6147000193595886,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10725","display_name":"RNA Interference and Gene Delivery","score":0.6147000193595886,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11872","display_name":"Barrier Structure and Function Studies","score":0.07599999755620956,"subfield":{"id":"https://openalex.org/subfields/2808","display_name":"Neurology"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13326","display_name":"Biochemical and Structural Characterization","score":0.05130000039935112,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/neuroprotection","display_name":"Neuroprotection","score":0.5444999933242798},{"id":"https://openalex.org/keywords/brain-function","display_name":"Brain function","score":0.46219998598098755},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.39899998903274536},{"id":"https://openalex.org/keywords/peptide","display_name":"Peptide","score":0.3905999958515167},{"id":"https://openalex.org/keywords/blood\u2013brain-barrier","display_name":"Blood\u2013brain barrier","score":0.3686000108718872},{"id":"https://openalex.org/keywords/quantitative-structure\u2013activity-relationship","display_name":"Quantitative structure\u2013activity relationship","score":0.366100013256073},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.34389999508857727}],"concepts":[{"id":"https://openalex.org/C25498285","wikidata":"https://www.wikidata.org/wiki/Q1981368","display_name":"Neuroprotection","level":2,"score":0.5444999933242798},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5314000248908997},{"id":"https://openalex.org/C3018390542","wikidata":"https://www.wikidata.org/wiki/Q1073","display_name":"Brain function","level":2,"score":0.46219998598098755},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.45329999923706055},{"id":"https://openalex.org/C169760540","wikidata":"https://www.wikidata.org/wiki/Q207011","display_name":"Neuroscience","level":1,"score":0.4366999864578247},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.39899998903274536},{"id":"https://openalex.org/C2779281246","wikidata":"https://www.wikidata.org/wiki/Q172847","display_name":"Peptide","level":2,"score":0.3905999958515167},{"id":"https://openalex.org/C2778402981","wikidata":"https://www.wikidata.org/wiki/Q221694","display_name":"Blood\u2013brain barrier","level":3,"score":0.3686000108718872},{"id":"https://openalex.org/C164126121","wikidata":"https://www.wikidata.org/wiki/Q766383","display_name":"Quantitative structure\u2013activity relationship","level":2,"score":0.366100013256073},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.34389999508857727},{"id":"https://openalex.org/C2988540567","wikidata":"https://www.wikidata.org/wiki/Q12070446","display_name":"Model system","level":2,"score":0.34369999170303345},{"id":"https://openalex.org/C89025888","wikidata":"https://www.wikidata.org/wiki/Q911907","display_name":"Dihedral angle","level":4,"score":0.32690000534057617},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.31679999828338623},{"id":"https://openalex.org/C41625074","wikidata":"https://www.wikidata.org/wiki/Q176088","display_name":"Membrane","level":2,"score":0.3149000108242035},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.31290000677108765},{"id":"https://openalex.org/C529278444","wikidata":"https://www.wikidata.org/wiki/Q47273","display_name":"Central nervous system","level":2,"score":0.3061999976634979},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.29260000586509705},{"id":"https://openalex.org/C183696295","wikidata":"https://www.wikidata.org/wiki/Q2487696","display_name":"Biochemical engineering","level":1,"score":0.287200003862381},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.28119999170303345},{"id":"https://openalex.org/C66322947","wikidata":"https://www.wikidata.org/wiki/Q11658","display_name":"Transformer","level":3,"score":0.2800999879837036},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.2784000039100647},{"id":"https://openalex.org/C2780035454","wikidata":"https://www.wikidata.org/wiki/Q8386","display_name":"Drug","level":2,"score":0.2750999927520752},{"id":"https://openalex.org/C2779820397","wikidata":"https://www.wikidata.org/wiki/Q1392806","display_name":"Drug delivery","level":2,"score":0.26899999380111694},{"id":"https://openalex.org/C171250308","wikidata":"https://www.wikidata.org/wiki/Q11468","display_name":"Nanotechnology","level":1,"score":0.26010000705718994},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.2515999972820282}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1016/j.compbiolchem.2026.109049","is_oa":false,"landing_page_url":"https://doi.org/10.1016/j.compbiolchem.2026.109049","pdf_url":null,"source":{"id":"https://openalex.org/S104924063","display_name":"Computational Biology and Chemistry","issn_l":"1476-9271","issn":["1476-9271","1476-928X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computational Biology and Chemistry","raw_type":"journal-article"},{"id":"pmid:41985274","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/41985274","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computational biology and chemistry","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2429594787","display_name":null,"funder_award_id":"ASG2022077","funder_id":"https://openalex.org/F4320311327","funder_display_name":"Amrita Vishwa Vidyapeetham University"}],"funders":[{"id":"https://openalex.org/F4320311327","display_name":"Amrita Vishwa Vidyapeetham University","ror":"https://ror.org/03am10p12"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":56,"referenced_works":["https://openalex.org/W1931581539","https://openalex.org/W1971419499","https://openalex.org/W1983472437","https://openalex.org/W1995195889","https://openalex.org/W2002934128","https://openalex.org/W2027978582","https://openalex.org/W2076048958","https://openalex.org/W2101099825","https://openalex.org/W2102461176","https://openalex.org/W2108485077","https://openalex.org/W2114441129","https://openalex.org/W2133583551","https://openalex.org/W2156723154","https://openalex.org/W2175270296","https://openalex.org/W2326462092","https://openalex.org/W2418052364","https://openalex.org/W2515823427","https://openalex.org/W2545563135","https://openalex.org/W2591620984","https://openalex.org/W2608537286","https://openalex.org/W2622869413","https://openalex.org/W2724823461","https://openalex.org/W2900146500","https://openalex.org/W2986106760","https://openalex.org/W2996266725","https://openalex.org/W3088139956","https://openalex.org/W3104682194","https://openalex.org/W3119003488","https://openalex.org/W3120960768","https://openalex.org/W3137589855","https://openalex.org/W3190208036","https://openalex.org/W4212959738","https://openalex.org/W4213345021","https://openalex.org/W4220918561","https://openalex.org/W4307338327","https://openalex.org/W4319827624","https://openalex.org/W4327550249","https://openalex.org/W4362451505","https://openalex.org/W4378217890","https://openalex.org/W4384664778","https://openalex.org/W4386154961","https://openalex.org/W4388870421","https://openalex.org/W4388979610","https://openalex.org/W4389065588","https://openalex.org/W4392030556","https://openalex.org/W4394933790","https://openalex.org/W4400190406","https://openalex.org/W4401335077","https://openalex.org/W4404458588","https://openalex.org/W4407162510","https://openalex.org/W4407867706","https://openalex.org/W4408129349","https://openalex.org/W4408433527","https://openalex.org/W4409316237","https://openalex.org/W4410738257","https://openalex.org/W4415797047"],"related_works":[],"abstract_inverted_index":null,"counts_by_year":[],"updated_date":"2026-04-28T14:05:53.105641","created_date":"2026-04-15T00:00:00"}
