{"id":"https://openalex.org/W7139112749","doi":"https://doi.org/10.1016/j.compbiolchem.2026.109022","title":"Gene Ontology graph embeddings with Dynamic Thresholding based Deep Neural Networks for Multi-label protein subcellular localization prediction","display_name":"Gene Ontology graph embeddings with Dynamic Thresholding based Deep Neural Networks for Multi-label protein subcellular localization prediction","publication_year":2026,"publication_date":"2026-03-18","ids":{"openalex":"https://openalex.org/W7139112749","doi":"https://doi.org/10.1016/j.compbiolchem.2026.109022","pmid":"https://pubmed.ncbi.nlm.nih.gov/41865632"},"language":"en","primary_location":{"id":"doi:10.1016/j.compbiolchem.2026.109022","is_oa":false,"landing_page_url":"https://doi.org/10.1016/j.compbiolchem.2026.109022","pdf_url":null,"source":{"id":"https://openalex.org/S104924063","display_name":"Computational Biology and Chemistry","issn_l":"1476-9271","issn":["1476-9271","1476-928X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computational Biology and Chemistry","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5092437851","display_name":"Harsha Vardhan Chirumamilla","orcid":null},"institutions":[{"id":"https://openalex.org/I4210144604","display_name":"ITPEnergised Group (India)","ror":"https://ror.org/04y5qg507","country_code":"IN","type":"company","lineage":["https://openalex.org/I4210114570","https://openalex.org/I4210144604"]}],"countries":["IN"],"is_corresponding":true,"raw_author_name":"Harsha Vardhan Chirumamilla","raw_affiliation_strings":["Department of Computer Science and Engineering, National Institute of Technology Puducherry, Karaikal, 609609, Puducherry, India. Electronic address: harsha.ch.1306@gmail.com"],"raw_orcid":"https://orcid.org/0009-0001-4715-7940","affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, National Institute of Technology Puducherry, Karaikal, 609609, Puducherry, India. Electronic address: harsha.ch.1306@gmail.com","institution_ids":["https://openalex.org/I4210144604"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5092437850","display_name":"Tejus Paturu","orcid":null},"institutions":[{"id":"https://openalex.org/I4210144604","display_name":"ITPEnergised Group (India)","ror":"https://ror.org/04y5qg507","country_code":"IN","type":"company","lineage":["https://openalex.org/I4210114570","https://openalex.org/I4210144604"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Tejus Paturu","raw_affiliation_strings":["Department of Computer Science and Engineering, National Institute of Technology Puducherry, Karaikal, 609609, Puducherry, India"],"raw_orcid":"https://orcid.org/0009-0005-9521-1998","affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, National Institute of Technology Puducherry, Karaikal, 609609, Puducherry, India","institution_ids":["https://openalex.org/I4210144604"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5129911136","display_name":"Naga Raju Reddy Maruprolu","orcid":null},"institutions":[{"id":"https://openalex.org/I4210144604","display_name":"ITPEnergised Group (India)","ror":"https://ror.org/04y5qg507","country_code":"IN","type":"company","lineage":["https://openalex.org/I4210114570","https://openalex.org/I4210144604"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Naga Raju Reddy Maruprolu","raw_affiliation_strings":["Department of Computer Science and Engineering, National Institute of Technology Puducherry, Karaikal, 609609, Puducherry, India"],"raw_orcid":"https://orcid.org/0009-0000-3731-2225","affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, National Institute of Technology Puducherry, Karaikal, 609609, Puducherry, India","institution_ids":["https://openalex.org/I4210144604"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5024603420","display_name":"Sanjay Bankapur","orcid":"https://orcid.org/0000-0003-3982-3859"},"institutions":[{"id":"https://openalex.org/I4210144604","display_name":"ITPEnergised Group (India)","ror":"https://ror.org/04y5qg507","country_code":"IN","type":"company","lineage":["https://openalex.org/I4210114570","https://openalex.org/I4210144604"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Sanjay Bankapur","raw_affiliation_strings":["Department of Computer Science and Engineering, National Institute of Technology Puducherry, Karaikal, 609609, Puducherry, India"],"raw_orcid":"https://orcid.org/0000-0003-3982-3859","affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, National Institute of Technology Puducherry, Karaikal, 609609, Puducherry, India","institution_ids":["https://openalex.org/I4210144604"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5092437851"],"corresponding_institution_ids":["https://openalex.org/I4210144604"],"apc_list":{"value":2960,"currency":"USD","value_usd":2960},"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.28479258,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"123","issue":null,"first_page":"109022","last_page":"109022"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9835000038146973,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9835000038146973,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.004900000058114529,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.004100000020116568,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/gene-ontology","display_name":"Gene ontology","score":0.5925999879837036},{"id":"https://openalex.org/keywords/protein-subcellular-localization-prediction","display_name":"Protein subcellular localization prediction","score":0.541100025177002},{"id":"https://openalex.org/keywords/thresholding","display_name":"Thresholding","score":0.5142999887466431},{"id":"https://openalex.org/keywords/subcellular-localization","display_name":"Subcellular localization","score":0.48019999265670776},{"id":"https://openalex.org/keywords/support-vector-machine","display_name":"Support vector machine","score":0.47049999237060547},{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.4616999924182892},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.41200000047683716},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.4058000147342682}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7196999788284302},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6682999730110168},{"id":"https://openalex.org/C2987395477","wikidata":"https://www.wikidata.org/wiki/Q135085","display_name":"Gene ontology","level":4,"score":0.5925999879837036},{"id":"https://openalex.org/C140051345","wikidata":"https://www.wikidata.org/wiki/Q7251501","display_name":"Protein subcellular localization prediction","level":3,"score":0.541100025177002},{"id":"https://openalex.org/C191178318","wikidata":"https://www.wikidata.org/wiki/Q2256906","display_name":"Thresholding","level":3,"score":0.5142999887466431},{"id":"https://openalex.org/C2776879804","wikidata":"https://www.wikidata.org/wiki/Q7630919","display_name":"Subcellular localization","level":3,"score":0.48019999265670776},{"id":"https://openalex.org/C12267149","wikidata":"https://www.wikidata.org/wiki/Q282453","display_name":"Support vector machine","level":2,"score":0.47049999237060547},{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.4616999924182892},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.4129999876022339},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.41200000047683716},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.4058000147342682},{"id":"https://openalex.org/C41608201","wikidata":"https://www.wikidata.org/wiki/Q980509","display_name":"Embedding","level":2,"score":0.40310001373291016},{"id":"https://openalex.org/C153083717","wikidata":"https://www.wikidata.org/wiki/Q6535263","display_name":"Leverage (statistics)","level":2,"score":0.38850000500679016},{"id":"https://openalex.org/C83665646","wikidata":"https://www.wikidata.org/wiki/Q42139305","display_name":"Feature vector","level":2,"score":0.38589999079704285},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.3562000095844269},{"id":"https://openalex.org/C207060522","wikidata":"https://www.wikidata.org/wiki/Q7251473","display_name":"Protein function prediction","level":4,"score":0.3474000096321106},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.3449000120162964},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.3418000042438507},{"id":"https://openalex.org/C62611344","wikidata":"https://www.wikidata.org/wiki/Q1062658","display_name":"Node (physics)","level":2,"score":0.334199994802475},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.30250000953674316},{"id":"https://openalex.org/C52622490","wikidata":"https://www.wikidata.org/wiki/Q1026626","display_name":"Feature extraction","level":2,"score":0.28279998898506165},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.27559998631477356},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.26190000772476196},{"id":"https://openalex.org/C2780801425","wikidata":"https://www.wikidata.org/wiki/Q5164392","display_name":"Construct (python library)","level":2,"score":0.251800000667572}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000098422","descriptor_name":"Graph Neural Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000098422","descriptor_name":"Graph Neural Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000098422","descriptor_name":"Graph Neural Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1016/j.compbiolchem.2026.109022","is_oa":false,"landing_page_url":"https://doi.org/10.1016/j.compbiolchem.2026.109022","pdf_url":null,"source":{"id":"https://openalex.org/S104924063","display_name":"Computational Biology and Chemistry","issn_l":"1476-9271","issn":["1476-9271","1476-928X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computational Biology and Chemistry","raw_type":"journal-article"},{"id":"pmid:41865632","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/41865632","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computational biology and chemistry","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320318540","display_name":"National Institute of Technology, Raipur","ror":"https://ror.org/02y553197"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":47,"referenced_works":["https://openalex.org/W1971478190","https://openalex.org/W1983287978","https://openalex.org/W2020377848","https://openalex.org/W2029119755","https://openalex.org/W2051210555","https://openalex.org/W2112385576","https://openalex.org/W2123762916","https://openalex.org/W2153187042","https://openalex.org/W2158546283","https://openalex.org/W2158714788","https://openalex.org/W2191134648","https://openalex.org/W2419532700","https://openalex.org/W2730472814","https://openalex.org/W2762890495","https://openalex.org/W2884869637","https://openalex.org/W2889897443","https://openalex.org/W2897906189","https://openalex.org/W2962756421","https://openalex.org/W2980619092","https://openalex.org/W2987946433","https://openalex.org/W3000696438","https://openalex.org/W3010776531","https://openalex.org/W3031594758","https://openalex.org/W3032218242","https://openalex.org/W3084357007","https://openalex.org/W3098169577","https://openalex.org/W3109938628","https://openalex.org/W3124088661","https://openalex.org/W3124828689","https://openalex.org/W3129049721","https://openalex.org/W3149930164","https://openalex.org/W3158777740","https://openalex.org/W3163088702","https://openalex.org/W3177500196","https://openalex.org/W4200171665","https://openalex.org/W4220765486","https://openalex.org/W4225264859","https://openalex.org/W4313261557","https://openalex.org/W4323830612","https://openalex.org/W4386933460","https://openalex.org/W4389565201","https://openalex.org/W4390511508","https://openalex.org/W4392768202","https://openalex.org/W4392967240","https://openalex.org/W4393969942","https://openalex.org/W4396951452","https://openalex.org/W4398201885"],"related_works":[],"abstract_inverted_index":null,"counts_by_year":[],"updated_date":"2026-07-15T18:14:33.161393","created_date":"2026-03-20T00:00:00"}
