{"id":"https://openalex.org/W7131659662","doi":"https://doi.org/10.1016/j.compbiolchem.2026.108979","title":"HGCTBind: A hybrid architecture for predicting protein-DNA binding sites based on interpretable and contextual adaptive feature fusion","display_name":"HGCTBind: A hybrid architecture for predicting protein-DNA binding sites based on interpretable and contextual adaptive feature fusion","publication_year":2026,"publication_date":"2026-02-27","ids":{"openalex":"https://openalex.org/W7131659662","doi":"https://doi.org/10.1016/j.compbiolchem.2026.108979","pmid":"https://pubmed.ncbi.nlm.nih.gov/41791267"},"language":"en","primary_location":{"id":"doi:10.1016/j.compbiolchem.2026.108979","is_oa":false,"landing_page_url":"https://doi.org/10.1016/j.compbiolchem.2026.108979","pdf_url":null,"source":{"id":"https://openalex.org/S104924063","display_name":"Computational Biology and Chemistry","issn_l":"1476-9271","issn":["1476-9271","1476-928X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computational Biology and Chemistry","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5126879279","display_name":"Wentao Gong","orcid":null},"institutions":[{"id":"https://openalex.org/I52158045","display_name":"China Agricultural University","ror":"https://ror.org/04v3ywz14","country_code":"CN","type":"education","lineage":["https://openalex.org/I52158045"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wentao Gong","raw_affiliation_strings":["College of Science, China Agricultural University, Tsinghua East Road, Beijing 100083, China. Electronic address: gwentao@cau.edu.cn"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Science, China Agricultural University, Tsinghua East Road, Beijing 100083, China. Electronic address: gwentao@cau.edu.cn","institution_ids":["https://openalex.org/I52158045"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5126931878","display_name":"Feifan Zhang","orcid":null},"institutions":[{"id":"https://openalex.org/I52158045","display_name":"China Agricultural University","ror":"https://ror.org/04v3ywz14","country_code":"CN","type":"education","lineage":["https://openalex.org/I52158045"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Feifan Zhang","raw_affiliation_strings":["College of Science, China Agricultural University, Tsinghua East Road, Beijing 100083, China. Electronic address: feifanzhang@cau.edu.cn"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Science, China Agricultural University, Tsinghua East Road, Beijing 100083, China. Electronic address: feifanzhang@cau.edu.cn","institution_ids":["https://openalex.org/I52158045"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5126929642","display_name":"Junfan Chen","orcid":null},"institutions":[{"id":"https://openalex.org/I52158045","display_name":"China Agricultural University","ror":"https://ror.org/04v3ywz14","country_code":"CN","type":"education","lineage":["https://openalex.org/I52158045"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Junfan Chen","raw_affiliation_strings":["College of Information and Electrical Engineering, China Agricultural University, Tsinghua East Road, Beijing 100083, China. Electronic address: 2022307150610@cau.edu.cn"],"raw_orcid":"https://orcid.org/0009-0003-9625-8929","affiliations":[{"raw_affiliation_string":"College of Information and Electrical Engineering, China Agricultural University, Tsinghua East Road, Beijing 100083, China. Electronic address: 2022307150610@cau.edu.cn","institution_ids":["https://openalex.org/I52158045"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5108910201","display_name":"Kehan Lu","orcid":null},"institutions":[{"id":"https://openalex.org/I52158045","display_name":"China Agricultural University","ror":"https://ror.org/04v3ywz14","country_code":"CN","type":"education","lineage":["https://openalex.org/I52158045"]},{"id":"https://openalex.org/I99065089","display_name":"Tsinghua University","ror":"https://ror.org/03cve4549","country_code":"CN","type":"education","lineage":["https://openalex.org/I99065089"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Kehan Lu","raw_affiliation_strings":["College of Information and Electrical Engineering, China Agricultural University, Tsinghua East Road, Beijing 100083, China. Electronic address: kehan_lu@163.com"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Information and Electrical Engineering, China Agricultural University, Tsinghua East Road, Beijing 100083, China. Electronic address: kehan_lu@163.com","institution_ids":["https://openalex.org/I52158045","https://openalex.org/I99065089"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5126931878"],"corresponding_institution_ids":["https://openalex.org/I52158045"],"apc_list":{"value":2960,"currency":"USD","value_usd":2960},"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.3377672,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"123","issue":null,"first_page":"108979","last_page":"108979"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.6855999827384949,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.6855999827384949,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.11029999703168869,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.06040000170469284,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/interpretability","display_name":"Interpretability","score":0.8783000111579895},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.6067000031471252},{"id":"https://openalex.org/keywords/fusion","display_name":"Fusion","score":0.4787999987602234},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.4595000147819519},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.4424999952316284},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.4325000047683716},{"id":"https://openalex.org/keywords/convolutional-neural-network","display_name":"Convolutional neural network","score":0.42750000953674316},{"id":"https://openalex.org/keywords/feature-learning","display_name":"Feature learning","score":0.3497999906539917}],"concepts":[{"id":"https://openalex.org/C2781067378","wikidata":"https://www.wikidata.org/wiki/Q17027399","display_name":"Interpretability","level":2,"score":0.8783000111579895},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7304999828338623},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6559000015258789},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.6067000031471252},{"id":"https://openalex.org/C158525013","wikidata":"https://www.wikidata.org/wiki/Q2593739","display_name":"Fusion","level":2,"score":0.4787999987602234},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.4595000147819519},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.4424999952316284},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.4325000047683716},{"id":"https://openalex.org/C81363708","wikidata":"https://www.wikidata.org/wiki/Q17084460","display_name":"Convolutional neural network","level":2,"score":0.42750000953674316},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.4140999913215637},{"id":"https://openalex.org/C59404180","wikidata":"https://www.wikidata.org/wiki/Q17013334","display_name":"Feature learning","level":2,"score":0.3497999906539917},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.3327000141143799},{"id":"https://openalex.org/C52622490","wikidata":"https://www.wikidata.org/wiki/Q1026626","display_name":"Feature extraction","level":2,"score":0.3228999972343445},{"id":"https://openalex.org/C2777212361","wikidata":"https://www.wikidata.org/wiki/Q5127848","display_name":"Class (philosophy)","level":2,"score":0.31310001015663147},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.303600013256073},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.2921999990940094},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.29030001163482666},{"id":"https://openalex.org/C35639132","wikidata":"https://www.wikidata.org/wiki/Q7452468","display_name":"Sequence labeling","level":3,"score":0.2786000072956085},{"id":"https://openalex.org/C83665646","wikidata":"https://www.wikidata.org/wiki/Q42139305","display_name":"Feature vector","level":2,"score":0.27570000290870667},{"id":"https://openalex.org/C66322947","wikidata":"https://www.wikidata.org/wiki/Q11658","display_name":"Transformer","level":3,"score":0.27390000224113464},{"id":"https://openalex.org/C123657996","wikidata":"https://www.wikidata.org/wiki/Q12271","display_name":"Architecture","level":2,"score":0.2732999920845032},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.265500009059906}],"mesh":[{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D004268","descriptor_name":"DNA-Binding Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D004268","descriptor_name":"DNA-Binding Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1016/j.compbiolchem.2026.108979","is_oa":false,"landing_page_url":"https://doi.org/10.1016/j.compbiolchem.2026.108979","pdf_url":null,"source":{"id":"https://openalex.org/S104924063","display_name":"Computational Biology and Chemistry","issn_l":"1476-9271","issn":["1476-9271","1476-928X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computational Biology and Chemistry","raw_type":"journal-article"},{"id":"pmid:41791267","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/41791267","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computational biology and chemistry","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":48,"referenced_works":["https://openalex.org/W1980825481","https://openalex.org/W2018661561","https://openalex.org/W2024005354","https://openalex.org/W2038670706","https://openalex.org/W2043638247","https://openalex.org/W2104707079","https://openalex.org/W2108067237","https://openalex.org/W2122401542","https://openalex.org/W2140538197","https://openalex.org/W2149997286","https://openalex.org/W2156136208","https://openalex.org/W2168745915","https://openalex.org/W2170747616","https://openalex.org/W2472103865","https://openalex.org/W2785269871","https://openalex.org/W2807540482","https://openalex.org/W2892720054","https://openalex.org/W2933350524","https://openalex.org/W3007077815","https://openalex.org/W3026748450","https://openalex.org/W3121082297","https://openalex.org/W3121281384","https://openalex.org/W3126876258","https://openalex.org/W3146944767","https://openalex.org/W3177500196","https://openalex.org/W3208957581","https://openalex.org/W4205989901","https://openalex.org/W4241727697","https://openalex.org/W4252684946","https://openalex.org/W4281785626","https://openalex.org/W4283011532","https://openalex.org/W4296472808","https://openalex.org/W4309728351","https://openalex.org/W4327550249","https://openalex.org/W4366239108","https://openalex.org/W4389076414","https://openalex.org/W4390046779","https://openalex.org/W4391788775","https://openalex.org/W4392239148","https://openalex.org/W4392368999","https://openalex.org/W4400420070","https://openalex.org/W4403013847","https://openalex.org/W4406440058","https://openalex.org/W4409369328","https://openalex.org/W4410203841","https://openalex.org/W4410954573","https://openalex.org/W4411301146","https://openalex.org/W4415796266"],"related_works":[],"abstract_inverted_index":null,"counts_by_year":[],"updated_date":"2026-05-16T08:24:45.110214","created_date":"2026-02-27T00:00:00"}
