{"id":"https://openalex.org/W7129544287","doi":"https://doi.org/10.1016/j.compbiolchem.2026.108958","title":"Searching disease-related genes with Mapping of Biological Entities from Literature (MaBEL)","display_name":"Searching disease-related genes with Mapping of Biological Entities from Literature (MaBEL)","publication_year":2026,"publication_date":"2026-02-17","ids":{"openalex":"https://openalex.org/W7129544287","doi":"https://doi.org/10.1016/j.compbiolchem.2026.108958","pmid":"https://pubmed.ncbi.nlm.nih.gov/41722286"},"language":"en","primary_location":{"id":"doi:10.1016/j.compbiolchem.2026.108958","is_oa":false,"landing_page_url":"https://doi.org/10.1016/j.compbiolchem.2026.108958","pdf_url":null,"source":{"id":"https://openalex.org/S104924063","display_name":"Computational Biology and Chemistry","issn_l":"1476-9271","issn":["1476-9271","1476-928X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computational Biology and Chemistry","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5043739875","display_name":"Gratchela Dutra Rodrigues","orcid":"https://orcid.org/0000-0003-1120-7659"},"institutions":[{"id":"https://openalex.org/I4210090727","display_name":"Faculdade de Desenvolvimento do Rio Grande do Sul","ror":"https://ror.org/00gck2e56","country_code":"BR","type":"education","lineage":["https://openalex.org/I4210090727"]}],"countries":["BR"],"is_corresponding":true,"raw_author_name":"Gratchela Dutra Rodrigues","raw_affiliation_strings":["Centro de Desenvolvimento Tecnol\u00f3gico, Campus Universit\u00e1rio, S / N - Cap\u00e3o do Le\u00e3o, Rio Grande do Sul 96160-000, Brazil. Electronic address: gratchela.dutra@ufpel.edu.br"],"raw_orcid":"https://orcid.org/0000-0003-1120-7659","affiliations":[{"raw_affiliation_string":"Centro de Desenvolvimento Tecnol\u00f3gico, Campus Universit\u00e1rio, S / N - Cap\u00e3o do Le\u00e3o, Rio Grande do Sul 96160-000, Brazil. Electronic address: gratchela.dutra@ufpel.edu.br","institution_ids":["https://openalex.org/I4210090727"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5093890547","display_name":"Gabriel Liston de Menek","orcid":null},"institutions":[{"id":"https://openalex.org/I4210090727","display_name":"Faculdade de Desenvolvimento do Rio Grande do Sul","ror":"https://ror.org/00gck2e56","country_code":"BR","type":"education","lineage":["https://openalex.org/I4210090727"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Gabriel Liston de Menek","raw_affiliation_strings":["Centro de Desenvolvimento Tecnol\u00f3gico, Campus Universit\u00e1rio, S / N - Cap\u00e3o do Le\u00e3o, Rio Grande do Sul 96160-000, Brazil. Electronic address: gabriel.menek@ufpel.edu.br"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centro de Desenvolvimento Tecnol\u00f3gico, Campus Universit\u00e1rio, S / N - Cap\u00e3o do Le\u00e3o, Rio Grande do Sul 96160-000, Brazil. Electronic address: gabriel.menek@ufpel.edu.br","institution_ids":["https://openalex.org/I4210090727"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077833915","display_name":"Darling de Andrade Louren\u00e7o","orcid":"https://orcid.org/0000-0001-9890-6713"},"institutions":[{"id":"https://openalex.org/I4210090727","display_name":"Faculdade de Desenvolvimento do Rio Grande do Sul","ror":"https://ror.org/00gck2e56","country_code":"BR","type":"education","lineage":["https://openalex.org/I4210090727"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Darling de Andrade Louren\u00e7o","raw_affiliation_strings":["Centro de Desenvolvimento Tecnol\u00f3gico, Campus Universit\u00e1rio, S / N - Cap\u00e3o do Le\u00e3o, Rio Grande do Sul 96160-000, Brazil. Electronic address: darling.lourenco@ufpel.edu.br"],"raw_orcid":"https://orcid.org/0000-0001-9890-6713","affiliations":[{"raw_affiliation_string":"Centro de Desenvolvimento Tecnol\u00f3gico, Campus Universit\u00e1rio, S / N - Cap\u00e3o do Le\u00e3o, Rio Grande do Sul 96160-000, Brazil. Electronic address: darling.lourenco@ufpel.edu.br","institution_ids":["https://openalex.org/I4210090727"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5126204194","display_name":"Frederico Schmitt Kremer","orcid":null},"institutions":[{"id":"https://openalex.org/I4210090727","display_name":"Faculdade de Desenvolvimento do Rio Grande do Sul","ror":"https://ror.org/00gck2e56","country_code":"BR","type":"education","lineage":["https://openalex.org/I4210090727"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Frederico Schmitt Kremer","raw_affiliation_strings":["Centro de Desenvolvimento Tecnol\u00f3gico, Campus Universit\u00e1rio, S / N - Cap\u00e3o do Le\u00e3o, Rio Grande do Sul 96160-000, Brazil. Electronic address: fredericok.cdtec@ufpel.edu.br"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centro de Desenvolvimento Tecnol\u00f3gico, Campus Universit\u00e1rio, S / N - Cap\u00e3o do Le\u00e3o, Rio Grande do Sul 96160-000, Brazil. Electronic address: fredericok.cdtec@ufpel.edu.br","institution_ids":["https://openalex.org/I4210090727"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5043739875"],"corresponding_institution_ids":["https://openalex.org/I4210090727"],"apc_list":{"value":2960,"currency":"USD","value_usd":2960},"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.16214571,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"123","issue":null,"first_page":"108958","last_page":"108958"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.996999979019165,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.996999979019165,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.0007999999797903001,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.0005000000237487257,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.7276999950408936},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.5486999750137329},{"id":"https://openalex.org/keywords/modular-design","display_name":"Modular design","score":0.5184999704360962},{"id":"https://openalex.org/keywords/biological-data","display_name":"Biological data","score":0.42820000648498535},{"id":"https://openalex.org/keywords/biological-database","display_name":"Biological database","score":0.3407999873161316},{"id":"https://openalex.org/keywords/semantics","display_name":"Semantics (computer science)","score":0.3248000144958496},{"id":"https://openalex.org/keywords/categorization","display_name":"Categorization","score":0.31869998574256897},{"id":"https://openalex.org/keywords/semantic-similarity","display_name":"Semantic similarity","score":0.2989000082015991}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8148000240325928},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.7276999950408936},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.5486999750137329},{"id":"https://openalex.org/C101468663","wikidata":"https://www.wikidata.org/wiki/Q1620158","display_name":"Modular design","level":2,"score":0.5184999704360962},{"id":"https://openalex.org/C201797286","wikidata":"https://www.wikidata.org/wiki/Q4914986","display_name":"Biological data","level":2,"score":0.42820000648498535},{"id":"https://openalex.org/C20901353","wikidata":"https://www.wikidata.org/wiki/Q4117139","display_name":"Biological database","level":2,"score":0.3407999873161316},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.33500000834465027},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.33480000495910645},{"id":"https://openalex.org/C184337299","wikidata":"https://www.wikidata.org/wiki/Q1437428","display_name":"Semantics (computer science)","level":2,"score":0.3248000144958496},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.32089999318122864},{"id":"https://openalex.org/C94124525","wikidata":"https://www.wikidata.org/wiki/Q912550","display_name":"Categorization","level":2,"score":0.31869998574256897},{"id":"https://openalex.org/C130318100","wikidata":"https://www.wikidata.org/wiki/Q2268914","display_name":"Semantic similarity","level":2,"score":0.2989000082015991},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.29739999771118164},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.29280000925064087},{"id":"https://openalex.org/C5655090","wikidata":"https://www.wikidata.org/wiki/Q192588","display_name":"Relational database","level":2,"score":0.2921000123023987},{"id":"https://openalex.org/C100776233","wikidata":"https://www.wikidata.org/wiki/Q2532492","display_name":"Bridge (graph theory)","level":2,"score":0.2842999994754791},{"id":"https://openalex.org/C93996380","wikidata":"https://www.wikidata.org/wiki/Q44127","display_name":"Server","level":2,"score":0.2838999927043915},{"id":"https://openalex.org/C32587265","wikidata":"https://www.wikidata.org/wiki/Q1182260","display_name":"Data deduplication","level":2,"score":0.2833999991416931},{"id":"https://openalex.org/C142853389","wikidata":"https://www.wikidata.org/wiki/Q744778","display_name":"Association (psychology)","level":2,"score":0.28299999237060547},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.2806999981403351},{"id":"https://openalex.org/C195324797","wikidata":"https://www.wikidata.org/wiki/Q33742","display_name":"Natural language","level":2,"score":0.2685000002384186},{"id":"https://openalex.org/C72634772","wikidata":"https://www.wikidata.org/wiki/Q386824","display_name":"Data integration","level":2,"score":0.258899986743927}],"mesh":[{"descriptor_ui":"D004194","descriptor_name":"Disease","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D004194","descriptor_name":"Disease","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D004194","descriptor_name":"Disease","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D004194","descriptor_name":"Disease","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D004194","descriptor_name":"Disease","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011642","descriptor_name":"Publications","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011642","descriptor_name":"Publications","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1016/j.compbiolchem.2026.108958","is_oa":false,"landing_page_url":"https://doi.org/10.1016/j.compbiolchem.2026.108958","pdf_url":null,"source":{"id":"https://openalex.org/S104924063","display_name":"Computational Biology and Chemistry","issn_l":"1476-9271","issn":["1476-9271","1476-928X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computational Biology and Chemistry","raw_type":"journal-article"},{"id":"pmid:41722286","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/41722286","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computational biology and chemistry","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/4","display_name":"Quality Education","score":0.7575342655181885}],"awards":[{"id":"https://openalex.org/G2956117599","display_name":null,"funder_award_id":"300854/2023\\u20134","funder_id":"https://openalex.org/F4320322025","funder_display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico"},{"id":"https://openalex.org/G3028927418","display_name":null,"funder_award_id":"301687/2023\\u20134","funder_id":"https://openalex.org/F4320322025","funder_display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico"},{"id":"https://openalex.org/G5955767302","display_name":null,"funder_award_id":"104284/2023\\u20134","funder_id":"https://openalex.org/F4320322025","funder_display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico"}],"funders":[{"id":"https://openalex.org/F4320322025","display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico","ror":"https://ror.org/03swz6y49"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":28,"referenced_works":["https://openalex.org/W1679133234","https://openalex.org/W1968761064","https://openalex.org/W2050263604","https://openalex.org/W2053039860","https://openalex.org/W2108010925","https://openalex.org/W2133030404","https://openalex.org/W2147558260","https://openalex.org/W2162151166","https://openalex.org/W2275721306","https://openalex.org/W2726701657","https://openalex.org/W2911489562","https://openalex.org/W2930950231","https://openalex.org/W2983166786","https://openalex.org/W3106811464","https://openalex.org/W3156936474","https://openalex.org/W3186744718","https://openalex.org/W3206307177","https://openalex.org/W4221081166","https://openalex.org/W4221142212","https://openalex.org/W4226055728","https://openalex.org/W4318475404","https://openalex.org/W4362591596","https://openalex.org/W4393935425","https://openalex.org/W4393936594","https://openalex.org/W4394642183","https://openalex.org/W4394892101","https://openalex.org/W4401827660","https://openalex.org/W4409745646"],"related_works":[],"abstract_inverted_index":null,"counts_by_year":[],"updated_date":"2026-07-09T07:52:08.696243","created_date":"2026-02-18T00:00:00"}
