{"id":"https://openalex.org/W7130657761","doi":"https://doi.org/10.1016/j.compbiolchem.2026.108954","title":"In silico transcriptomic analysis for biomarker discovery in TB and HIV co-infection","display_name":"In silico transcriptomic analysis for biomarker discovery in TB and HIV co-infection","publication_year":2026,"publication_date":"2026-02-20","ids":{"openalex":"https://openalex.org/W7130657761","doi":"https://doi.org/10.1016/j.compbiolchem.2026.108954","pmid":"https://pubmed.ncbi.nlm.nih.gov/41734663"},"language":"en","primary_location":{"id":"doi:10.1016/j.compbiolchem.2026.108954","is_oa":false,"landing_page_url":"https://doi.org/10.1016/j.compbiolchem.2026.108954","pdf_url":null,"source":{"id":"https://openalex.org/S104924063","display_name":"Computational Biology and Chemistry","issn_l":"1476-9271","issn":["1476-9271","1476-928X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computational Biology and Chemistry","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5116539188","display_name":"Javed Aalam","orcid":null},"institutions":[{"id":"https://openalex.org/I59475050","display_name":"Jamia Millia Islamia","ror":"https://ror.org/00pnhhv55","country_code":"IN","type":"education","lineage":["https://openalex.org/I59475050"]}],"countries":["IN"],"is_corresponding":true,"raw_author_name":"Javed Aalam","raw_affiliation_strings":["Department of Computer Science, Jamia Millia Islamia, New Delhi 110025, India. Electronic address: javed2206276@st.jmi.ac.in"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Jamia Millia Islamia, New Delhi 110025, India. Electronic address: javed2206276@st.jmi.ac.in","institution_ids":["https://openalex.org/I59475050"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5110767125","display_name":"Rafat Parveen","orcid":"https://orcid.org/0000-0003-3829-3200"},"institutions":[{"id":"https://openalex.org/I59475050","display_name":"Jamia Millia Islamia","ror":"https://ror.org/00pnhhv55","country_code":"IN","type":"education","lineage":["https://openalex.org/I59475050"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Rafat Parveen","raw_affiliation_strings":["Department of Computer Science, Jamia Millia Islamia, New Delhi 110025, India. Electronic address: rparveen@jmi.ac.in"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Jamia Millia Islamia, New Delhi 110025, India. Electronic address: rparveen@jmi.ac.in","institution_ids":["https://openalex.org/I59475050"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5116539188"],"corresponding_institution_ids":["https://openalex.org/I59475050"],"apc_list":{"value":2960,"currency":"USD","value_usd":2960},"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.67286501,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"123","issue":null,"first_page":"108954","last_page":"108954"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10038","display_name":"Tuberculosis Research and Epidemiology","score":0.6668999791145325,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10038","display_name":"Tuberculosis Research and Epidemiology","score":0.6668999791145325,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11381","display_name":"Infectious Diseases and Tuberculosis","score":0.23829999566078186,"subfield":{"id":"https://openalex.org/subfields/2746","display_name":"Surgery"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11668","display_name":"interferon and immune responses","score":0.03920000046491623,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/in-silico","display_name":"In silico","score":0.8222000002861023},{"id":"https://openalex.org/keywords/transcriptome","display_name":"Transcriptome","score":0.6556000113487244},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.6398000121116638},{"id":"https://openalex.org/keywords/human-immunodeficiency-virus","display_name":"Human immunodeficiency virus (HIV)","score":0.6309999823570251},{"id":"https://openalex.org/keywords/biomarker-discovery","display_name":"Biomarker discovery","score":0.630299985408783},{"id":"https://openalex.org/keywords/biomarker","display_name":"Biomarker","score":0.5151000022888184},{"id":"https://openalex.org/keywords/precision-medicine","display_name":"Precision medicine","score":0.4632999897003174},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.3691999912261963}],"concepts":[{"id":"https://openalex.org/C2775905019","wikidata":"https://www.wikidata.org/wiki/Q192572","display_name":"In silico","level":3,"score":0.8222000002861023},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.7475000023841858},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.6556000113487244},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.6398000121116638},{"id":"https://openalex.org/C3013748606","wikidata":"https://www.wikidata.org/wiki/Q15787","display_name":"Human immunodeficiency virus (HIV)","level":2,"score":0.6309999823570251},{"id":"https://openalex.org/C124535831","wikidata":"https://www.wikidata.org/wiki/Q4915074","display_name":"Biomarker discovery","level":4,"score":0.630299985408783},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5480999946594238},{"id":"https://openalex.org/C2781197716","wikidata":"https://www.wikidata.org/wiki/Q864574","display_name":"Biomarker","level":2,"score":0.5151000022888184},{"id":"https://openalex.org/C163763905","wikidata":"https://www.wikidata.org/wiki/Q17075943","display_name":"Precision medicine","level":2,"score":0.4632999897003174},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.37880000472068787},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.3691999912261963},{"id":"https://openalex.org/C3019646584","wikidata":"https://www.wikidata.org/wiki/Q2311855","display_name":"Molecular biomarkers","level":2,"score":0.31150001287460327},{"id":"https://openalex.org/C126831891","wikidata":"https://www.wikidata.org/wiki/Q221673","display_name":"Host (biology)","level":2,"score":0.28949999809265137},{"id":"https://openalex.org/C152662350","wikidata":"https://www.wikidata.org/wiki/Q815297","display_name":"Systems biology","level":2,"score":0.27399998903274536},{"id":"https://openalex.org/C32220436","wikidata":"https://www.wikidata.org/wiki/Q2072214","display_name":"Personalized medicine","level":2,"score":0.27140000462532043},{"id":"https://openalex.org/C103697762","wikidata":"https://www.wikidata.org/wiki/Q4112105","display_name":"Virtual screening","level":3,"score":0.2669000029563904},{"id":"https://openalex.org/C2781069245","wikidata":"https://www.wikidata.org/wiki/Q12204","display_name":"Tuberculosis","level":2,"score":0.26660001277923584},{"id":"https://openalex.org/C163293594","wikidata":"https://www.wikidata.org/wiki/Q7834541","display_name":"Translational bioinformatics","level":5,"score":0.25699999928474426},{"id":"https://openalex.org/C3020404979","wikidata":"https://www.wikidata.org/wiki/Q1058438","display_name":"Risk stratification","level":2,"score":0.25540000200271606}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1016/j.compbiolchem.2026.108954","is_oa":false,"landing_page_url":"https://doi.org/10.1016/j.compbiolchem.2026.108954","pdf_url":null,"source":{"id":"https://openalex.org/S104924063","display_name":"Computational Biology and Chemistry","issn_l":"1476-9271","issn":["1476-9271","1476-928X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computational Biology and Chemistry","raw_type":"journal-article"},{"id":"pmid:41734663","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/41734663","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computational biology and chemistry","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3","score":0.6101492643356323}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":88,"referenced_works":["https://openalex.org/W19422881","https://openalex.org/W1546213590","https://openalex.org/W1576773659","https://openalex.org/W1841952269","https://openalex.org/W1972273299","https://openalex.org/W1972805278","https://openalex.org/W1973094248","https://openalex.org/W1977377125","https://openalex.org/W2000177767","https://openalex.org/W2009263681","https://openalex.org/W2028575270","https://openalex.org/W2029765186","https://openalex.org/W2034023446","https://openalex.org/W2035509260","https://openalex.org/W2036234686","https://openalex.org/W2036606290","https://openalex.org/W2053384955","https://openalex.org/W2053665358","https://openalex.org/W2056981069","https://openalex.org/W2067211313","https://openalex.org/W2070552972","https://openalex.org/W2076039408","https://openalex.org/W2082314789","https://openalex.org/W2085099489","https://openalex.org/W2096173332","https://openalex.org/W2099610218","https://openalex.org/W2102278945","https://openalex.org/W2102942479","https://openalex.org/W2104941073","https://openalex.org/W2108234281","https://openalex.org/W2110065044","https://openalex.org/W2114421191","https://openalex.org/W2119226590","https://openalex.org/W2123295196","https://openalex.org/W2131271579","https://openalex.org/W2131624932","https://openalex.org/W2133210805","https://openalex.org/W2138207763","https://openalex.org/W2140809531","https://openalex.org/W2145866317","https://openalex.org/W2146384070","https://openalex.org/W2150107812","https://openalex.org/W2150492824","https://openalex.org/W2158217645","https://openalex.org/W2159675211","https://openalex.org/W2164309428","https://openalex.org/W2179438025","https://openalex.org/W2203875694","https://openalex.org/W2285903333","https://openalex.org/W2302425335","https://openalex.org/W2427805706","https://openalex.org/W2599754235","https://openalex.org/W2606513998","https://openalex.org/W2735527928","https://openalex.org/W2737860676","https://openalex.org/W2763252130","https://openalex.org/W2792808765","https://openalex.org/W2796083647","https://openalex.org/W2804663340","https://openalex.org/W2897480194","https://openalex.org/W2902837410","https://openalex.org/W2912706008","https://openalex.org/W2942068613","https://openalex.org/W2951254340","https://openalex.org/W2969718529","https://openalex.org/W3096828292","https://openalex.org/W3117286245","https://openalex.org/W3163535355","https://openalex.org/W3195667341","https://openalex.org/W3196745917","https://openalex.org/W4210387969","https://openalex.org/W4210627381","https://openalex.org/W4211183388","https://openalex.org/W4220869957","https://openalex.org/W4254687493","https://openalex.org/W4281664196","https://openalex.org/W4287308120","https://openalex.org/W4292261903","https://openalex.org/W4307706276","https://openalex.org/W4312139968","https://openalex.org/W4362560756","https://openalex.org/W4392292343","https://openalex.org/W4396517807","https://openalex.org/W4403396178","https://openalex.org/W4408197823","https://openalex.org/W4413795669","https://openalex.org/W4413795839","https://openalex.org/W4414166570"],"related_works":[],"abstract_inverted_index":null,"counts_by_year":[],"updated_date":"2026-02-26T06:29:33.603293","created_date":"2026-02-20T00:00:00"}
