{"id":"https://openalex.org/W7125118612","doi":"https://doi.org/10.1016/j.compbiolchem.2026.108913","title":"CCTAD: A topologically associating domains detection method integrating convolutional autoencoder and hierarchical clustering","display_name":"CCTAD: A topologically associating domains detection method integrating convolutional autoencoder and hierarchical clustering","publication_year":2026,"publication_date":"2026-01-21","ids":{"openalex":"https://openalex.org/W7125118612","doi":"https://doi.org/10.1016/j.compbiolchem.2026.108913","pmid":"https://pubmed.ncbi.nlm.nih.gov/41579554"},"language":"en","primary_location":{"id":"doi:10.1016/j.compbiolchem.2026.108913","is_oa":true,"landing_page_url":"https://doi.org/10.1016/j.compbiolchem.2026.108913","pdf_url":null,"source":{"id":"https://openalex.org/S104924063","display_name":"Computational Biology and Chemistry","issn_l":"1476-9271","issn":["1476-9271","1476-928X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computational Biology and Chemistry","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://doi.org/10.1016/j.compbiolchem.2026.108913","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5062830046","display_name":"Feng RuiPing","orcid":null},"institutions":[{"id":"https://openalex.org/I4210166499","display_name":"Henan Polytechnic University","ror":"https://ror.org/05vr1c885","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210166499"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Feng Ruiping","raw_affiliation_strings":["School of Software, Henan Polytechnic University, Jiaozuo 454003, China"],"affiliations":[{"raw_affiliation_string":"School of Software, Henan Polytechnic University, Jiaozuo 454003, China","institution_ids":["https://openalex.org/I4210166499"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5107674044","display_name":"Luo Junwei","orcid":null},"institutions":[{"id":"https://openalex.org/I4210166499","display_name":"Henan Polytechnic University","ror":"https://ror.org/05vr1c885","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210166499"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Luo Junwei","raw_affiliation_strings":["School of Software, Henan Polytechnic University, Jiaozuo 454003, China. Electronic address: luojunwei@hpu.edu.cn"],"affiliations":[{"raw_affiliation_string":"School of Software, Henan Polytechnic University, Jiaozuo 454003, China. Electronic address: luojunwei@hpu.edu.cn","institution_ids":["https://openalex.org/I4210166499"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5123468039","display_name":"Liu Kaihua","orcid":null},"institutions":[{"id":"https://openalex.org/I4210166499","display_name":"Henan Polytechnic University","ror":"https://ror.org/05vr1c885","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210166499"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Liu Kaihua","raw_affiliation_strings":["School of Software, Henan Polytechnic University, Jiaozuo 454003, China"],"affiliations":[{"raw_affiliation_string":"School of Software, Henan Polytechnic University, Jiaozuo 454003, China","institution_ids":["https://openalex.org/I4210166499"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5123533661","display_name":"Guo Fei","orcid":null},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Guo Fei","raw_affiliation_strings":["School of Computer Science and Engineering, Central South University, Changsha 410083, China. Electronic address: guofei@csu.edu.cn"],"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University, Changsha 410083, China. Electronic address: guofei@csu.edu.cn","institution_ids":["https://openalex.org/I139660479"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5062830046"],"corresponding_institution_ids":["https://openalex.org/I4210166499"],"apc_list":{"value":2960,"currency":"USD","value_usd":2960},"apc_paid":{"value":2960,"currency":"USD","value_usd":2960},"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.14178862,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"122","issue":null,"first_page":"108913","last_page":"108913"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.7213000059127808,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.7213000059127808,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.18520000576972961,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.011300000362098217,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/autoencoder","display_name":"Autoencoder","score":0.8095999956130981},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.6323999762535095},{"id":"https://openalex.org/keywords/key","display_name":"Key (lock)","score":0.590399980545044},{"id":"https://openalex.org/keywords/hierarchical-clustering","display_name":"Hierarchical clustering","score":0.5774000287055969},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.5536999702453613},{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.5533999800682068}],"concepts":[{"id":"https://openalex.org/C101738243","wikidata":"https://www.wikidata.org/wiki/Q786435","display_name":"Autoencoder","level":3,"score":0.8095999956130981},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6884999871253967},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6848000288009644},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.6323999762535095},{"id":"https://openalex.org/C26517878","wikidata":"https://www.wikidata.org/wiki/Q228039","display_name":"Key (lock)","level":2,"score":0.590399980545044},{"id":"https://openalex.org/C92835128","wikidata":"https://www.wikidata.org/wiki/Q1277447","display_name":"Hierarchical clustering","level":3,"score":0.5774000287055969},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.5536999702453613},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.5533999800682068},{"id":"https://openalex.org/C81363708","wikidata":"https://www.wikidata.org/wiki/Q17084460","display_name":"Convolutional neural network","level":2,"score":0.492900013923645},{"id":"https://openalex.org/C62354387","wikidata":"https://www.wikidata.org/wiki/Q875399","display_name":"Boundary (topology)","level":2,"score":0.45019999146461487},{"id":"https://openalex.org/C144986985","wikidata":"https://www.wikidata.org/wiki/Q871236","display_name":"Hierarchical database model","level":2,"score":0.3549000024795532},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.2953999936580658},{"id":"https://openalex.org/C124527596","wikidata":"https://www.wikidata.org/wiki/Q17029359","display_name":"Hierarchical control system","level":3,"score":0.26159998774528503},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.2574999928474426}],"mesh":[{"descriptor_ui":"D000098446","descriptor_name":"Autoencoder","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002843","descriptor_name":"Chromatin","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D002843","descriptor_name":"Chromatin","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1016/j.compbiolchem.2026.108913","is_oa":true,"landing_page_url":"https://doi.org/10.1016/j.compbiolchem.2026.108913","pdf_url":null,"source":{"id":"https://openalex.org/S104924063","display_name":"Computational Biology and Chemistry","issn_l":"1476-9271","issn":["1476-9271","1476-928X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computational Biology and Chemistry","raw_type":"journal-article"},{"id":"pmid:41579554","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/41579554","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computational biology and chemistry","raw_type":null}],"best_oa_location":{"id":"doi:10.1016/j.compbiolchem.2026.108913","is_oa":true,"landing_page_url":"https://doi.org/10.1016/j.compbiolchem.2026.108913","pdf_url":null,"source":{"id":"https://openalex.org/S104924063","display_name":"Computational Biology and Chemistry","issn_l":"1476-9271","issn":["1476-9271","1476-928X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computational Biology and Chemistry","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G6221982799","display_name":null,"funder_award_id":"62372156","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":41,"referenced_works":["https://openalex.org/W1989373989","https://openalex.org/W2014677321","https://openalex.org/W2070021921","https://openalex.org/W2090037139","https://openalex.org/W2102368172","https://openalex.org/W2132089243","https://openalex.org/W2156626022","https://openalex.org/W2175853567","https://openalex.org/W2227178360","https://openalex.org/W2755736028","https://openalex.org/W2765865112","https://openalex.org/W2769659182","https://openalex.org/W2784063494","https://openalex.org/W2885386724","https://openalex.org/W2943761358","https://openalex.org/W2951765178","https://openalex.org/W2987747596","https://openalex.org/W3007651317","https://openalex.org/W3010360466","https://openalex.org/W3042431393","https://openalex.org/W3184186335","https://openalex.org/W3213694110","https://openalex.org/W3216316500","https://openalex.org/W4210385976","https://openalex.org/W4210880116","https://openalex.org/W4283644665","https://openalex.org/W4323545743","https://openalex.org/W4366594168","https://openalex.org/W4376121484","https://openalex.org/W4390650730","https://openalex.org/W4391253080","https://openalex.org/W4392607741","https://openalex.org/W4395458039","https://openalex.org/W4396672869","https://openalex.org/W4400647686","https://openalex.org/W4402983315","https://openalex.org/W4405631927","https://openalex.org/W4408845443","https://openalex.org/W4409035338","https://openalex.org/W4409178631","https://openalex.org/W4410997516"],"related_works":[],"abstract_inverted_index":{"Evaluation":[0],"of":[1,15],"CCTAD":[2],"across":[3],"multiple":[4],"cell":[5],"lines":[6],"and":[7],"resolutions":[8],"demonstrates":[9],"its":[10],"advantages":[11],"in":[12],"boundary":[13],"identification":[14],"key":[16],"regulatory":[17],"elements.":[18]},"counts_by_year":[],"updated_date":"2026-04-09T08:11:56.329763","created_date":"2026-01-22T00:00:00"}
