{"id":"https://openalex.org/W4416276233","doi":"https://doi.org/10.1016/j.compbiolchem.2025.108772","title":"Integrating multi-omics data for personalized nutrition using knowledge graphs and graph neural networks: A comprehensive review","display_name":"Integrating multi-omics data for personalized nutrition using knowledge graphs and graph neural networks: A comprehensive review","publication_year":2025,"publication_date":"2025-11-13","ids":{"openalex":"https://openalex.org/W4416276233","doi":"https://doi.org/10.1016/j.compbiolchem.2025.108772","pmid":"https://pubmed.ncbi.nlm.nih.gov/41240439"},"language":"en","primary_location":{"id":"doi:10.1016/j.compbiolchem.2025.108772","is_oa":false,"landing_page_url":"https://doi.org/10.1016/j.compbiolchem.2025.108772","pdf_url":null,"source":{"id":"https://openalex.org/S104924063","display_name":"Computational Biology and Chemistry","issn_l":"1476-9271","issn":["1476-9271","1476-928X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computational Biology and Chemistry","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5120405160","display_name":"Sharath Thoniyot","orcid":null},"institutions":[{"id":"https://openalex.org/I2799752099","display_name":"Synergy University Dubai","ror":"https://ror.org/034ee3t09","country_code":"AE","type":"education","lineage":["https://openalex.org/I2799752099","https://openalex.org/I4210115303"]},{"id":"https://openalex.org/I4210164135","display_name":"Birla Institute of Technology and Science, Pilani - Dubai Campus","ror":"https://ror.org/05jnbme07","country_code":"AE","type":"education","lineage":["https://openalex.org/I4210164135","https://openalex.org/I74796645"]}],"countries":["AE"],"is_corresponding":true,"raw_author_name":"Sharath Thoniyot","raw_affiliation_strings":["Department of Computer Science, Birla Institute of Technology and Science, Pilani, Dubai, Campus, Dubai International Academic City, Dubai, United Arab Emirates. Electronic address: p20230010@dubai.bits-pilani.ac.in"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Birla Institute of Technology and Science, Pilani, Dubai, Campus, Dubai International Academic City, Dubai, United Arab Emirates. Electronic address: p20230010@dubai.bits-pilani.ac.in","institution_ids":["https://openalex.org/I4210164135","https://openalex.org/I2799752099"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5003730282","display_name":"Vijayakumar Balakrishnan","orcid":"https://orcid.org/0000-0002-3570-4732"},"institutions":[{"id":"https://openalex.org/I2799752099","display_name":"Synergy University Dubai","ror":"https://ror.org/034ee3t09","country_code":"AE","type":"education","lineage":["https://openalex.org/I2799752099","https://openalex.org/I4210115303"]},{"id":"https://openalex.org/I4210164135","display_name":"Birla Institute of Technology and Science, Pilani - Dubai Campus","ror":"https://ror.org/05jnbme07","country_code":"AE","type":"education","lineage":["https://openalex.org/I4210164135","https://openalex.org/I74796645"]}],"countries":["AE"],"is_corresponding":false,"raw_author_name":"Vijayakumar Balakrishnan","raw_affiliation_strings":["Department of Computer Science, Birla Institute of Technology and Science, Pilani, Dubai, Campus, Dubai International Academic City, Dubai, United Arab Emirates"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Birla Institute of Technology and Science, Pilani, Dubai, Campus, Dubai International Academic City, Dubai, United Arab Emirates","institution_ids":["https://openalex.org/I4210164135","https://openalex.org/I2799752099"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5120405160"],"corresponding_institution_ids":["https://openalex.org/I2799752099","https://openalex.org/I4210164135"],"apc_list":{"value":2960,"currency":"USD","value_usd":2960},"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.37401627,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"120","issue":"Pt 1","first_page":"108772","last_page":"108772"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13984","display_name":"Nutrition, Genetics, and Disease","score":0.8702999949455261,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T13984","display_name":"Nutrition, Genetics, and Disease","score":0.8702999949455261,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.013700000010430813,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.013299999758601189,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/interpretability","display_name":"Interpretability","score":0.859000027179718},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.6097000241279602},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.5837000012397766},{"id":"https://openalex.org/keywords/biological-data","display_name":"Biological data","score":0.47450000047683716},{"id":"https://openalex.org/keywords/field","display_name":"Field (mathematics)","score":0.41370001435279846},{"id":"https://openalex.org/keywords/knowledge-graph","display_name":"Knowledge graph","score":0.40959998965263367},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.3937999904155731},{"id":"https://openalex.org/keywords/standardization","display_name":"Standardization","score":0.35350000858306885},{"id":"https://openalex.org/keywords/knowledge-extraction","display_name":"Knowledge extraction","score":0.32330000400543213}],"concepts":[{"id":"https://openalex.org/C2781067378","wikidata":"https://www.wikidata.org/wiki/Q17027399","display_name":"Interpretability","level":2,"score":0.859000027179718},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7444999814033508},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.6097000241279602},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.5837000012397766},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.5734000205993652},{"id":"https://openalex.org/C201797286","wikidata":"https://www.wikidata.org/wiki/Q4914986","display_name":"Biological data","level":2,"score":0.47450000047683716},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4675999879837036},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.4634999930858612},{"id":"https://openalex.org/C9652623","wikidata":"https://www.wikidata.org/wiki/Q190109","display_name":"Field (mathematics)","level":2,"score":0.41370001435279846},{"id":"https://openalex.org/C2987255567","wikidata":"https://www.wikidata.org/wiki/Q33002955","display_name":"Knowledge graph","level":2,"score":0.40959998965263367},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.3937999904155731},{"id":"https://openalex.org/C188087704","wikidata":"https://www.wikidata.org/wiki/Q369577","display_name":"Standardization","level":2,"score":0.35350000858306885},{"id":"https://openalex.org/C120567893","wikidata":"https://www.wikidata.org/wiki/Q1582085","display_name":"Knowledge extraction","level":2,"score":0.32330000400543213},{"id":"https://openalex.org/C28225019","wikidata":"https://www.wikidata.org/wiki/Q4915005","display_name":"Biological network","level":2,"score":0.31459999084472656},{"id":"https://openalex.org/C20901353","wikidata":"https://www.wikidata.org/wiki/Q4117139","display_name":"Biological database","level":2,"score":0.31439998745918274},{"id":"https://openalex.org/C2779530757","wikidata":"https://www.wikidata.org/wiki/Q1207505","display_name":"Quality (philosophy)","level":2,"score":0.31290000677108765},{"id":"https://openalex.org/C75684735","wikidata":"https://www.wikidata.org/wiki/Q858810","display_name":"Big data","level":2,"score":0.3012999892234802},{"id":"https://openalex.org/C152662350","wikidata":"https://www.wikidata.org/wiki/Q815297","display_name":"Systems biology","level":2,"score":0.29809999465942383},{"id":"https://openalex.org/C143121216","wikidata":"https://www.wikidata.org/wiki/Q1330402","display_name":"Microbiome","level":2,"score":0.2953999936580658},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.2946000099182129},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.2784999907016754},{"id":"https://openalex.org/C138958017","wikidata":"https://www.wikidata.org/wiki/Q190087","display_name":"Data type","level":2,"score":0.27239999175071716},{"id":"https://openalex.org/C161301231","wikidata":"https://www.wikidata.org/wiki/Q3478658","display_name":"Knowledge representation and reasoning","level":2,"score":0.271699994802475},{"id":"https://openalex.org/C163763905","wikidata":"https://www.wikidata.org/wiki/Q17075943","display_name":"Precision medicine","level":2,"score":0.26840001344680786},{"id":"https://openalex.org/C187191949","wikidata":"https://www.wikidata.org/wiki/Q1138496","display_name":"Profiling (computer programming)","level":2,"score":0.26429998874664307},{"id":"https://openalex.org/C539667460","wikidata":"https://www.wikidata.org/wiki/Q2414942","display_name":"Management science","level":1,"score":0.2581999897956848},{"id":"https://openalex.org/C206345919","wikidata":"https://www.wikidata.org/wiki/Q20380951","display_name":"Resource (disambiguation)","level":2,"score":0.2567000091075897},{"id":"https://openalex.org/C62230096","wikidata":"https://www.wikidata.org/wiki/Q275969","display_name":"Crowdsourcing","level":2,"score":0.25380000472068787},{"id":"https://openalex.org/C32220436","wikidata":"https://www.wikidata.org/wiki/Q2072214","display_name":"Personalized medicine","level":2,"score":0.25189998745918274}],"mesh":[{"descriptor_ui":"D000095028","descriptor_name":"Multiomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000095028","descriptor_name":"Multiomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000098422","descriptor_name":"Graph Neural Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000098422","descriptor_name":"Graph Neural Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055432","descriptor_name":"Metabolomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055432","descriptor_name":"Metabolomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057285","descriptor_name":"Precision Medicine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057285","descriptor_name":"Precision Medicine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1016/j.compbiolchem.2025.108772","is_oa":false,"landing_page_url":"https://doi.org/10.1016/j.compbiolchem.2025.108772","pdf_url":null,"source":{"id":"https://openalex.org/S104924063","display_name":"Computational Biology and Chemistry","issn_l":"1476-9271","issn":["1476-9271","1476-928X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computational Biology and Chemistry","raw_type":"journal-article"},{"id":"pmid:41240439","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/41240439","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computational biology and chemistry","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":49,"referenced_works":["https://openalex.org/W2315826322","https://openalex.org/W3003265726","https://openalex.org/W3041985484","https://openalex.org/W3093240221","https://openalex.org/W3121875687","https://openalex.org/W3130869292","https://openalex.org/W3158643450","https://openalex.org/W3164960251","https://openalex.org/W3206028095","https://openalex.org/W3207242393","https://openalex.org/W3214390321","https://openalex.org/W4210706440","https://openalex.org/W4220684263","https://openalex.org/W4292809756","https://openalex.org/W4309010659","https://openalex.org/W4309369017","https://openalex.org/W4309729081","https://openalex.org/W4309910661","https://openalex.org/W4319440566","https://openalex.org/W4319759388","https://openalex.org/W4319777762","https://openalex.org/W4361268280","https://openalex.org/W4367310992","https://openalex.org/W4377099260","https://openalex.org/W4380303551","https://openalex.org/W4385201338","https://openalex.org/W4386601930","https://openalex.org/W4388539797","https://openalex.org/W4391404199","https://openalex.org/W4391759643","https://openalex.org/W4393142382","https://openalex.org/W4395660270","https://openalex.org/W4396801861","https://openalex.org/W4400142159","https://openalex.org/W4401326040","https://openalex.org/W4401547778","https://openalex.org/W4401638840","https://openalex.org/W4402657102","https://openalex.org/W4402808474","https://openalex.org/W4404919807","https://openalex.org/W4405025868","https://openalex.org/W4405515957","https://openalex.org/W4407676881","https://openalex.org/W4407902831","https://openalex.org/W4408971509","https://openalex.org/W4409456828","https://openalex.org/W4409570665","https://openalex.org/W4409766690","https://openalex.org/W4411026594"],"related_works":[],"abstract_inverted_index":null,"counts_by_year":[],"updated_date":"2026-01-20T17:24:06.736184","created_date":"2025-11-13T00:00:00"}
