{"id":"https://openalex.org/W4415625978","doi":"https://doi.org/10.1016/j.compbiolchem.2025.108751","title":"Survey on phylogenetic tree construction using machine learning","display_name":"Survey on phylogenetic tree construction using machine learning","publication_year":2025,"publication_date":"2025-10-28","ids":{"openalex":"https://openalex.org/W4415625978","doi":"https://doi.org/10.1016/j.compbiolchem.2025.108751","pmid":"https://pubmed.ncbi.nlm.nih.gov/41172604"},"language":"en","primary_location":{"id":"doi:10.1016/j.compbiolchem.2025.108751","is_oa":false,"landing_page_url":"https://doi.org/10.1016/j.compbiolchem.2025.108751","pdf_url":null,"source":{"id":"https://openalex.org/S104924063","display_name":"Computational Biology and Chemistry","issn_l":"1476-9271","issn":["1476-9271","1476-928X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computational Biology and Chemistry","raw_type":"journal-article"},"type":"review","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5021933983","display_name":"Norbert Buch","orcid":"https://orcid.org/0000-0002-7095-8383"},"institutions":[{"id":"https://openalex.org/I10008193","display_name":"Dharmsinh Desai University","ror":"https://ror.org/05f1zzd23","country_code":"IN","type":"education","lineage":["https://openalex.org/I10008193"]}],"countries":["IN"],"is_corresponding":true,"raw_author_name":"Niyati Buch","raw_affiliation_strings":["Department of Computer Engineering, Dharmsinh Desai University, Nadiad, 387001, Gujarat, India. Electronic address: niyatibuch.ce@ddu.ac.in"],"affiliations":[{"raw_affiliation_string":"Department of Computer Engineering, Dharmsinh Desai University, Nadiad, 387001, Gujarat, India. Electronic address: niyatibuch.ce@ddu.ac.in","institution_ids":["https://openalex.org/I10008193"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5001416604","display_name":"Bhavika Gambhava","orcid":"https://orcid.org/0000-0001-9237-9035"},"institutions":[{"id":"https://openalex.org/I10008193","display_name":"Dharmsinh Desai University","ror":"https://ror.org/05f1zzd23","country_code":"IN","type":"education","lineage":["https://openalex.org/I10008193"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Bhavika Gambhava","raw_affiliation_strings":["Department of Computer Engineering, Dharmsinh Desai University, Nadiad, 387001, Gujarat, India. Electronic address: bhavika.ce@ddu.ac.in"],"affiliations":[{"raw_affiliation_string":"Department of Computer Engineering, Dharmsinh Desai University, Nadiad, 387001, Gujarat, India. Electronic address: bhavika.ce@ddu.ac.in","institution_ids":["https://openalex.org/I10008193"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5021933983"],"corresponding_institution_ids":["https://openalex.org/I10008193"],"apc_list":{"value":2960,"currency":"USD","value_usd":2960},"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.28710148,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"120","issue":"Pt 2","first_page":"108751","last_page":"108751"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.47209998965263367,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.47209998965263367,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13664","display_name":"Genome Rearrangement Algorithms","score":0.06849999725818634,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11354","display_name":"Evolution and Paleontology Studies","score":0.058800000697374344,"subfield":{"id":"https://openalex.org/subfields/1911","display_name":"Paleontology"},"field":{"id":"https://openalex.org/fields/19","display_name":"Earth and Planetary Sciences"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/phylogenetic-tree","display_name":"Phylogenetic tree","score":0.8295000195503235},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.5062999725341797},{"id":"https://openalex.org/keywords/tree","display_name":"Tree (set theory)","score":0.47119998931884766},{"id":"https://openalex.org/keywords/computational-phylogenetics","display_name":"Computational phylogenetics","score":0.4681999981403351},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.4560999870300293},{"id":"https://openalex.org/keywords/phylogenetic-network","display_name":"Phylogenetic network","score":0.41780000925064087},{"id":"https://openalex.org/keywords/phylogenetics","display_name":"Phylogenetics","score":0.3903000056743622}],"concepts":[{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.8295000195503235},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.7074999809265137},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.7070000171661377},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5268999934196472},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.5062999725341797},{"id":"https://openalex.org/C113174947","wikidata":"https://www.wikidata.org/wiki/Q2859736","display_name":"Tree (set theory)","level":2,"score":0.47119998931884766},{"id":"https://openalex.org/C41168302","wikidata":"https://www.wikidata.org/wiki/Q3772859","display_name":"Computational phylogenetics","level":5,"score":0.4681999981403351},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.4560999870300293},{"id":"https://openalex.org/C26619641","wikidata":"https://www.wikidata.org/wiki/Q3142246","display_name":"Phylogenetic network","level":4,"score":0.41780000925064087},{"id":"https://openalex.org/C90132467","wikidata":"https://www.wikidata.org/wiki/Q171184","display_name":"Phylogenetics","level":3,"score":0.3903000056743622},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.37439998984336853},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.3711000084877014},{"id":"https://openalex.org/C84525736","wikidata":"https://www.wikidata.org/wiki/Q831366","display_name":"Decision tree","level":2,"score":0.33230000734329224},{"id":"https://openalex.org/C176771619","wikidata":"https://www.wikidata.org/wiki/Q7189434","display_name":"Phylogenetic comparative methods","level":4,"score":0.3228999972343445},{"id":"https://openalex.org/C88031987","wikidata":"https://www.wikidata.org/wiki/Q1377767","display_name":"Multiple sequence alignment","level":5,"score":0.314300000667572},{"id":"https://openalex.org/C53208351","wikidata":"https://www.wikidata.org/wiki/Q7837630","display_name":"Tree rearrangement","level":4,"score":0.2752000093460083},{"id":"https://openalex.org/C45942800","wikidata":"https://www.wikidata.org/wiki/Q245652","display_name":"Ensemble learning","level":2,"score":0.2565000057220459},{"id":"https://openalex.org/C126042441","wikidata":"https://www.wikidata.org/wiki/Q1324888","display_name":"Frame (networking)","level":2,"score":0.2502000033855438}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1016/j.compbiolchem.2025.108751","is_oa":false,"landing_page_url":"https://doi.org/10.1016/j.compbiolchem.2025.108751","pdf_url":null,"source":{"id":"https://openalex.org/S104924063","display_name":"Computational Biology and Chemistry","issn_l":"1476-9271","issn":["1476-9271","1476-928X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computational Biology and Chemistry","raw_type":"journal-article"},{"id":"pmid:41172604","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/41172604","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computational biology and chemistry","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":144,"referenced_works":["https://openalex.org/W4281096","https://openalex.org/W1501531009","https://openalex.org/W1550721780","https://openalex.org/W1590240800","https://openalex.org/W1946356339","https://openalex.org/W1967293793","https://openalex.org/W1970778615","https://openalex.org/W1970999032","https://openalex.org/W1999727705","https://openalex.org/W2009596137","https://openalex.org/W2017519756","https://openalex.org/W2021399907","https://openalex.org/W2024829346","https://openalex.org/W2029833898","https://openalex.org/W2031770870","https://openalex.org/W2055758623","https://openalex.org/W2060425093","https://openalex.org/W2062018285","https://openalex.org/W2065461553","https://openalex.org/W2073363915","https://openalex.org/W2082928585","https://openalex.org/W2085407331","https://openalex.org/W2090493969","https://openalex.org/W2100874222","https://openalex.org/W2102424972","https://openalex.org/W2106882534","https://openalex.org/W2108243986","https://openalex.org/W2110335151","https://openalex.org/W2111647009","https://openalex.org/W2113592912","https://openalex.org/W2120611093","https://openalex.org/W2120653759","https://openalex.org/W2122035212","https://openalex.org/W2127774996","https://openalex.org/W2129103781","https://openalex.org/W2132926880","https://openalex.org/W2135780060","https://openalex.org/W2136911182","https://openalex.org/W2139134537","https://openalex.org/W2140872496","https://openalex.org/W2141052558","https://openalex.org/W2144362290","https://openalex.org/W2145100181","https://openalex.org/W2157552136","https://openalex.org/W2161444534","https://openalex.org/W2162800127","https://openalex.org/W2162960722","https://openalex.org/W2163627198","https://openalex.org/W2163892779","https://openalex.org/W2167117443","https://openalex.org/W2178890195","https://openalex.org/W2303869673","https://openalex.org/W2339037950","https://openalex.org/W2482907813","https://openalex.org/W2488449982","https://openalex.org/W2502626162","https://openalex.org/W2514853964","https://openalex.org/W2563535234","https://openalex.org/W2564696663","https://openalex.org/W2589912496","https://openalex.org/W2614081736","https://openalex.org/W2749122933","https://openalex.org/W2889664156","https://openalex.org/W2890223884","https://openalex.org/W2892237103","https://openalex.org/W2911390449","https://openalex.org/W2915395120","https://openalex.org/W2941281896","https://openalex.org/W2951464304","https://openalex.org/W2963502130","https://openalex.org/W2969866109","https://openalex.org/W2973043487","https://openalex.org/W2996966823","https://openalex.org/W3037064900","https://openalex.org/W3037216933","https://openalex.org/W3090235895","https://openalex.org/W3100159300","https://openalex.org/W3110917833","https://openalex.org/W3115522577","https://openalex.org/W3127238141","https://openalex.org/W3135507857","https://openalex.org/W3142481250","https://openalex.org/W3146944767","https://openalex.org/W3148521828","https://openalex.org/W3163965514","https://openalex.org/W3177500196","https://openalex.org/W3177828909","https://openalex.org/W3208467155","https://openalex.org/W3213133098","https://openalex.org/W3216775526","https://openalex.org/W4205133233","https://openalex.org/W4205611921","https://openalex.org/W4205773061","https://openalex.org/W4210501852","https://openalex.org/W4220682644","https://openalex.org/W4223552703","https://openalex.org/W4223644783","https://openalex.org/W4226048102","https://openalex.org/W4254698667","https://openalex.org/W4256333965","https://openalex.org/W4280548602","https://openalex.org/W4284879653","https://openalex.org/W4307582507","https://openalex.org/W4309306270","https://openalex.org/W4321324714","https://openalex.org/W4323040519","https://openalex.org/W4327550249","https://openalex.org/W4376613902","https://openalex.org/W4385880802","https://openalex.org/W4386462191","https://openalex.org/W4387516748","https://openalex.org/W4388615740","https://openalex.org/W4390005441","https://openalex.org/W4390692098","https://openalex.org/W4393280180","https://openalex.org/W4393359181","https://openalex.org/W4394692269","https://openalex.org/W4396889850","https://openalex.org/W4398177119","https://openalex.org/W4399280703","https://openalex.org/W4399512978","https://openalex.org/W4399629105","https://openalex.org/W4400743299","https://openalex.org/W4402030034","https://openalex.org/W4402278817","https://openalex.org/W4403064295","https://openalex.org/W4403433703","https://openalex.org/W4403479876","https://openalex.org/W4404328264","https://openalex.org/W4404772819","https://openalex.org/W4404821554","https://openalex.org/W4405670661","https://openalex.org/W4406170484","https://openalex.org/W4406440058","https://openalex.org/W4406578941","https://openalex.org/W4408220952","https://openalex.org/W4408233319","https://openalex.org/W4408339719","https://openalex.org/W4408764283","https://openalex.org/W4409851400","https://openalex.org/W4410029690","https://openalex.org/W4410361227","https://openalex.org/W4412709368","https://openalex.org/W4413757025"],"related_works":[],"abstract_inverted_index":null,"counts_by_year":[],"updated_date":"2026-01-20T17:24:06.736184","created_date":"2025-10-29T00:00:00"}
