{"id":"https://openalex.org/W2549222720","doi":"https://doi.org/10.1016/j.compbiolchem.2016.11.002","title":"Investigating dysregulated pathways in Staphylococcus aureus (SA) exposed macrophages based on pathway interaction network","display_name":"Investigating dysregulated pathways in Staphylococcus aureus (SA) exposed macrophages based on pathway interaction network","publication_year":2016,"publication_date":"2016-11-13","ids":{"openalex":"https://openalex.org/W2549222720","doi":"https://doi.org/10.1016/j.compbiolchem.2016.11.002","mag":"2549222720","pmid":"https://pubmed.ncbi.nlm.nih.gov/27866052"},"language":"en","primary_location":{"id":"doi:10.1016/j.compbiolchem.2016.11.002","is_oa":false,"landing_page_url":"https://doi.org/10.1016/j.compbiolchem.2016.11.002","pdf_url":null,"source":{"id":"https://openalex.org/S104924063","display_name":"Computational Biology and Chemistry","issn_l":"1476-9271","issn":["1476-9271","1476-928X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computational Biology and Chemistry","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5050941153","display_name":"Wei Zhou","orcid":"https://orcid.org/0000-0003-1763-714X"},"institutions":[{"id":"https://openalex.org/I108160477","display_name":"Hebei Agricultural University","ror":"https://ror.org/009fw8j44","country_code":"CN","type":"education","lineage":["https://openalex.org/I108160477"]},{"id":"https://openalex.org/I4210122129","display_name":"Hebei Food Inspection and Research Institute","ror":"https://ror.org/02pxntn72","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210122129"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wei Zhou","raw_affiliation_strings":["College of Food Science and Technology, Agricultural University of Hebei, Baoding, 071000, Hebei Province, China; Department of Biological Safety Inspection, Hebei Food Inspection and Research Institute, Shijiazhuang, 050091, Hebei Province, China","College of Food Science and Technology, Agricultural University of Hebei, Baoding, 071000, Hebei Province, China","Department of Biological Safety Inspection, Hebei Food Inspection and Research Institute, Shijiazhuang, 050091, Hebei Province, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Food Science and Technology, Agricultural University of Hebei, Baoding, 071000, Hebei Province, China; Department of Biological Safety Inspection, Hebei Food Inspection and Research Institute, Shijiazhuang, 050091, Hebei Province, China","institution_ids":[]},{"raw_affiliation_string":"College of Food Science and Technology, Agricultural University of Hebei, Baoding, 071000, Hebei Province, China","institution_ids":["https://openalex.org/I108160477"]},{"raw_affiliation_string":"Department of Biological Safety Inspection, Hebei Food Inspection and Research Institute, Shijiazhuang, 050091, Hebei Province, China","institution_ids":["https://openalex.org/I4210122129"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100456227","display_name":"Yan Zhang","orcid":"https://orcid.org/0000-0002-2947-1629"},"institutions":[{"id":"https://openalex.org/I4210122129","display_name":"Hebei Food Inspection and Research Institute","ror":"https://ror.org/02pxntn72","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210122129"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yan Zhang","raw_affiliation_strings":["Department of Biological Safety Inspection, Hebei Food Inspection and Research Institute, Shijiazhuang, 050091, Hebei Province, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biological Safety Inspection, Hebei Food Inspection and Research Institute, Shijiazhuang, 050091, Hebei Province, China","institution_ids":["https://openalex.org/I4210122129"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100721624","display_name":"Yuehua Li","orcid":"https://orcid.org/0000-0002-1504-946X"},"institutions":[{"id":"https://openalex.org/I4210122129","display_name":"Hebei Food Inspection and Research Institute","ror":"https://ror.org/02pxntn72","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210122129"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yue-Hua Li","raw_affiliation_strings":["Department of Biological Safety Inspection, Hebei Food Inspection and Research Institute, Shijiazhuang, 050091, Hebei Province, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biological Safety Inspection, Hebei Food Inspection and Research Institute, Shijiazhuang, 050091, Hebei Province, China","institution_ids":["https://openalex.org/I4210122129"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100375568","display_name":"Shuang Wang","orcid":"https://orcid.org/0000-0002-1693-6888"},"institutions":[{"id":"https://openalex.org/I4210122129","display_name":"Hebei Food Inspection and Research Institute","ror":"https://ror.org/02pxntn72","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210122129"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shuang Wang","raw_affiliation_strings":["Department of Biological Safety Inspection, Hebei Food Inspection and Research Institute, Shijiazhuang, 050091, Hebei Province, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biological Safety Inspection, Hebei Food Inspection and Research Institute, Shijiazhuang, 050091, Hebei Province, China","institution_ids":["https://openalex.org/I4210122129"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100369376","display_name":"Jingjing Zhang","orcid":"https://orcid.org/0000-0002-1349-9184"},"institutions":[{"id":"https://openalex.org/I4210122129","display_name":"Hebei Food Inspection and Research Institute","ror":"https://ror.org/02pxntn72","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210122129"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jing-Jing Zhang","raw_affiliation_strings":["Department of Biological Safety Inspection, Hebei Food Inspection and Research Institute, Shijiazhuang, 050091, Hebei Province, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biological Safety Inspection, Hebei Food Inspection and Research Institute, Shijiazhuang, 050091, Hebei Province, China","institution_ids":["https://openalex.org/I4210122129"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067075187","display_name":"Cuixia Zhang","orcid":"https://orcid.org/0000-0002-1674-0535"},"institutions":[{"id":"https://openalex.org/I4210122129","display_name":"Hebei Food Inspection and Research Institute","ror":"https://ror.org/02pxntn72","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210122129"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Cui-Xia Zhang","raw_affiliation_strings":["Department of Biological Safety Inspection, Hebei Food Inspection and Research Institute, Shijiazhuang, 050091, Hebei Province, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biological Safety Inspection, Hebei Food Inspection and Research Institute, Shijiazhuang, 050091, Hebei Province, China","institution_ids":["https://openalex.org/I4210122129"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100643307","display_name":"Zhisheng Zhang","orcid":"https://orcid.org/0000-0002-0481-2589"},"institutions":[{"id":"https://openalex.org/I108160477","display_name":"Hebei Agricultural University","ror":"https://ror.org/009fw8j44","country_code":"CN","type":"education","lineage":["https://openalex.org/I108160477"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Zhi-Sheng Zhang","raw_affiliation_strings":["College of Food Science and Technology, Agricultural University of Hebei, Baoding, 071000, Hebei Province, China. Electronic address: zhishengzhang2016@yeah.net","College of Food Science and Technology, Agricultural University of Hebei, Baoding, 071000, Hebei Province, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Food Science and Technology, Agricultural University of Hebei, Baoding, 071000, Hebei Province, China. Electronic address: zhishengzhang2016@yeah.net","institution_ids":[]},{"raw_affiliation_string":"College of Food Science and Technology, Agricultural University of Hebei, Baoding, 071000, Hebei Province, China","institution_ids":["https://openalex.org/I108160477"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5100643307"],"corresponding_institution_ids":["https://openalex.org/I108160477"],"apc_list":{"value":2960,"currency":"USD","value_usd":2960},"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.08744528,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"66","issue":null,"first_page":"21","last_page":"25"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9293000102043152,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9293000102043152,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.006000000052154064,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.00430000014603138,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biological-pathway","display_name":"Biological pathway","score":0.5969979166984558},{"id":"https://openalex.org/keywords/metabolic-pathway","display_name":"Metabolic pathway","score":0.5257412195205688},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4967673420906067},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4689841866493225},{"id":"https://openalex.org/keywords/signal-transduction","display_name":"Signal transduction","score":0.45497632026672363},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.44953447580337524},{"id":"https://openalex.org/keywords/staphylococcus-aureus","display_name":"Staphylococcus aureus","score":0.44506335258483887},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.33256715536117554},{"id":"https://openalex.org/keywords/cell-biology","display_name":"Cell biology","score":0.29312577843666077},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.19581472873687744},{"id":"https://openalex.org/keywords/bacteria","display_name":"Bacteria","score":0.10418295860290527}],"concepts":[{"id":"https://openalex.org/C9927688","wikidata":"https://www.wikidata.org/wiki/Q4915012","display_name":"Biological pathway","level":4,"score":0.5969979166984558},{"id":"https://openalex.org/C192989942","wikidata":"https://www.wikidata.org/wiki/Q68685","display_name":"Metabolic pathway","level":3,"score":0.5257412195205688},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4967673420906067},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4689841866493225},{"id":"https://openalex.org/C62478195","wikidata":"https://www.wikidata.org/wiki/Q828130","display_name":"Signal transduction","level":2,"score":0.45497632026672363},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.44953447580337524},{"id":"https://openalex.org/C2779489039","wikidata":"https://www.wikidata.org/wiki/Q188121","display_name":"Staphylococcus aureus","level":3,"score":0.44506335258483887},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.33256715536117554},{"id":"https://openalex.org/C95444343","wikidata":"https://www.wikidata.org/wiki/Q7141","display_name":"Cell biology","level":1,"score":0.29312577843666077},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.19581472873687744},{"id":"https://openalex.org/C523546767","wikidata":"https://www.wikidata.org/wiki/Q10876","display_name":"Bacteria","level":2,"score":0.10418295860290527}],"mesh":[{"descriptor_ui":"D000255","descriptor_name":"Adenosine Triphosphate","qualifier_ui":"Q000096","qualifier_name":"biosynthesis","is_major_topic":false},{"descriptor_ui":"D000255","descriptor_name":"Adenosine Triphosphate","qualifier_ui":"Q000096","qualifier_name":"biosynthesis","is_major_topic":false},{"descriptor_ui":"D000255","descriptor_name":"Adenosine Triphosphate","qualifier_ui":"Q000096","qualifier_name":"biosynthesis","is_major_topic":false},{"descriptor_ui":"D004579","descriptor_name":"Electron Transport","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004579","descriptor_name":"Electron Transport","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004579","descriptor_name":"Electron Transport","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005798","descriptor_name":"Genes, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005798","descriptor_name":"Genes, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005798","descriptor_name":"Genes, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008264","descriptor_name":"Macrophages","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D008264","descriptor_name":"Macrophages","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D008264","descriptor_name":"Macrophages","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D008264","descriptor_name":"Macrophages","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D008264","descriptor_name":"Macrophages","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D008264","descriptor_name":"Macrophages","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D013211","descriptor_name":"Staphylococcus aureus","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D013211","descriptor_name":"Staphylococcus aureus","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D013211","descriptor_name":"Staphylococcus aureus","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D013211","descriptor_name":"Staphylococcus aureus","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D013211","descriptor_name":"Staphylococcus aureus","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D013211","descriptor_name":"Staphylococcus aureus","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D013211","descriptor_name":"Staphylococcus aureus","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D013211","descriptor_name":"Staphylococcus aureus","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D013211","descriptor_name":"Staphylococcus aureus","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D015964","descriptor_name":"Gene Expression Regulation, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015964","descriptor_name":"Gene Expression Regulation, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015964","descriptor_name":"Gene Expression Regulation, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1016/j.compbiolchem.2016.11.002","is_oa":false,"landing_page_url":"https://doi.org/10.1016/j.compbiolchem.2016.11.002","pdf_url":null,"source":{"id":"https://openalex.org/S104924063","display_name":"Computational Biology and Chemistry","issn_l":"1476-9271","issn":["1476-9271","1476-928X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computational Biology and Chemistry","raw_type":"journal-article"},{"id":"pmid:27866052","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27866052","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computational biology and chemistry","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":36,"referenced_works":["https://openalex.org/W321599858","https://openalex.org/W1512335987","https://openalex.org/W1584013292","https://openalex.org/W1591591348","https://openalex.org/W1681030413","https://openalex.org/W1852809048","https://openalex.org/W1878404532","https://openalex.org/W1964571849","https://openalex.org/W1973208496","https://openalex.org/W1973675012","https://openalex.org/W1973675652","https://openalex.org/W1981793562","https://openalex.org/W2017613731","https://openalex.org/W2042984912","https://openalex.org/W2047820517","https://openalex.org/W2060925544","https://openalex.org/W2064444082","https://openalex.org/W2065197001","https://openalex.org/W2083710045","https://openalex.org/W2096451472","https://openalex.org/W2099408190","https://openalex.org/W2099883798","https://openalex.org/W2109972881","https://openalex.org/W2120558414","https://openalex.org/W2120865735","https://openalex.org/W2127295844","https://openalex.org/W2129920705","https://openalex.org/W2131989143","https://openalex.org/W2133422148","https://openalex.org/W2139683115","https://openalex.org/W2156202734","https://openalex.org/W2171397614","https://openalex.org/W2763148304","https://openalex.org/W3144526075","https://openalex.org/W4237335579","https://openalex.org/W6834789038"],"related_works":["https://openalex.org/W2378339845","https://openalex.org/W2087715585","https://openalex.org/W2102850238","https://openalex.org/W2394833619","https://openalex.org/W1971040006","https://openalex.org/W2150700188","https://openalex.org/W3116780334","https://openalex.org/W2806907921","https://openalex.org/W3129154869","https://openalex.org/W2207468066"],"abstract_inverted_index":null,"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2022,"cited_by_count":1}],"updated_date":"2026-04-29T09:16:38.111599","created_date":"2025-10-10T00:00:00"}
