{"id":"https://openalex.org/W4383605166","doi":"https://doi.org/10.1016/j.bspc.2026.109512","title":"Topology-aware loss for segmentation in computed tomography images","display_name":"Topology-aware loss for segmentation in computed tomography images","publication_year":2026,"publication_date":"2026-01-14","ids":{"openalex":"https://openalex.org/W4383605166","doi":"https://doi.org/10.1016/j.bspc.2026.109512"},"language":"en","primary_location":{"id":"doi:10.1016/j.bspc.2026.109512","is_oa":false,"landing_page_url":"https://doi.org/10.1016/j.bspc.2026.109512","pdf_url":null,"source":{"id":"https://openalex.org/S8427965","display_name":"Biomedical Signal Processing and Control","issn_l":"1746-8094","issn":["1746-8094","1746-8108"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Biomedical Signal Processing and Control","raw_type":"journal-article"},"type":"preprint","indexed_in":["arxiv","crossref","datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://arxiv.org/pdf/2307.03137","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5112955694","display_name":"Seher Ozcelik","orcid":null},"institutions":[{"id":"https://openalex.org/I1351752","display_name":"Ko\u00e7 University","ror":"https://ror.org/00jzwgz36","country_code":"TR","type":"education","lineage":["https://openalex.org/I1351752"]}],"countries":["TR"],"is_corresponding":false,"raw_author_name":"Seher Ozcelik","raw_affiliation_strings":["Computational Sciences and Engineering Program and KUIS AI Center, Koc University, Istanbul, 34450, Turkey"],"raw_orcid":"https://orcid.org/0000-0002-5315-4260","affiliations":[{"raw_affiliation_string":"Computational Sciences and Engineering Program and KUIS AI Center, Koc University, Istanbul, 34450, Turkey","institution_ids":["https://openalex.org/I1351752"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016376765","display_name":"S\u0131\u0307nan \u00dcnver","orcid":null},"institutions":[{"id":"https://openalex.org/I1351752","display_name":"Ko\u00e7 University","ror":"https://ror.org/00jzwgz36","country_code":"TR","type":"education","lineage":["https://openalex.org/I1351752"]}],"countries":["TR"],"is_corresponding":false,"raw_author_name":"Sinan Unver","raw_affiliation_strings":["Department of Mathematics, Koc University, Istanbul, 34450, Turkey"],"raw_orcid":"https://orcid.org/0000-0001-5816-4882","affiliations":[{"raw_affiliation_string":"Department of Mathematics, Koc University, Istanbul, 34450, Turkey","institution_ids":["https://openalex.org/I1351752"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059445369","display_name":"\u0130lke Ali\u0307 G\u00fcrses","orcid":"https://orcid.org/0000-0001-9188-4662"},"institutions":[{"id":"https://openalex.org/I1351752","display_name":"Ko\u00e7 University","ror":"https://ror.org/00jzwgz36","country_code":"TR","type":"education","lineage":["https://openalex.org/I1351752"]}],"countries":["TR"],"is_corresponding":false,"raw_author_name":"Ilke Ali Gurses","raw_affiliation_strings":["Department of Anatomy, School of Medicine, Koc University, Istanbul, 34450, Turkey"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Anatomy, School of Medicine, Koc University, Istanbul, 34450, Turkey","institution_ids":["https://openalex.org/I1351752"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054826543","display_name":"R\u00fc\u015ft\u00fc T\u00fcrkay","orcid":"https://orcid.org/0000-0002-7837-9861"},"institutions":[{"id":"https://openalex.org/I4210108009","display_name":"Haseki E\u011fitim ve Ara\u015ft\u0131rma Hastanesi","ror":"https://ror.org/010q6ek40","country_code":"TR","type":"healthcare","lineage":["https://openalex.org/I4210108009"]}],"countries":["TR"],"is_corresponding":false,"raw_author_name":"Rustu Turkay","raw_affiliation_strings":["Department of Radiology, School of Medicine, Haseki SUAM, Medical Sciences University, Istanbul, 34265, Turkey"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Radiology, School of Medicine, Haseki SUAM, Medical Sciences University, Istanbul, 34265, Turkey","institution_ids":["https://openalex.org/I4210108009"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5043106100","display_name":"\u00c7i\u011fdem G\u00fcnd\u00fcz-Demir","orcid":"https://orcid.org/0000-0003-0724-1942"},"institutions":[{"id":"https://openalex.org/I1351752","display_name":"Ko\u00e7 University","ror":"https://ror.org/00jzwgz36","country_code":"TR","type":"education","lineage":["https://openalex.org/I1351752"]}],"countries":["TR"],"is_corresponding":true,"raw_author_name":"Cigdem Gunduz-Demir","raw_affiliation_strings":["Department of Computer Engineering, School of Medicine, and KUIS AI Center, Koc University, Istanbul, 34450, Turkey"],"raw_orcid":"https://orcid.org/0000-0003-0724-1942","affiliations":[{"raw_affiliation_string":"Department of Computer Engineering, School of Medicine, and KUIS AI Center, Koc University, Istanbul, 34450, Turkey","institution_ids":["https://openalex.org/I1351752"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5043106100"],"corresponding_institution_ids":["https://openalex.org/I1351752"],"apc_list":{"value":2420,"currency":"USD","value_usd":2420},"apc_paid":null,"fwci":20.0797,"has_fulltext":true,"cited_by_count":2,"citation_normalized_percentile":{"value":0.9845585,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":98},"biblio":{"volume":"117","issue":null,"first_page":"109512","last_page":"109512"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12536","display_name":"Topological and Geometric Data Analysis","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T12536","display_name":"Topological and Geometric Data Analysis","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11304","display_name":"Advanced Neuroimaging Techniques and Applications","score":0.9516000151634216,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9478999972343445,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/segmentation","display_name":"Segmentation","score":0.808067798614502},{"id":"https://openalex.org/keywords/ground-truth","display_name":"Ground truth","score":0.6700382232666016},{"id":"https://openalex.org/keywords/topology","display_name":"Topology (electrical circuits)","score":0.6353704929351807},{"id":"https://openalex.org/keywords/persistent-homology","display_name":"Persistent homology","score":0.5824358463287354},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.5595481395721436},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5521305799484253},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.5312630534172058},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.452314555644989},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.437175989151001},{"id":"https://openalex.org/keywords/image-segmentation","display_name":"Image segmentation","score":0.4248640239238739},{"id":"https://openalex.org/keywords/geometry","display_name":"Geometry","score":0.4131675064563751},{"id":"https://openalex.org/keywords/filtration","display_name":"Filtration (mathematics)","score":0.41164273023605347},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.3503395915031433},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.3436497151851654},{"id":"https://openalex.org/keywords/pure-mathematics","display_name":"Pure mathematics","score":0.1515336036682129},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.11171987652778625}],"concepts":[{"id":"https://openalex.org/C89600930","wikidata":"https://www.wikidata.org/wiki/Q1423946","display_name":"Segmentation","level":2,"score":0.808067798614502},{"id":"https://openalex.org/C146849305","wikidata":"https://www.wikidata.org/wiki/Q370766","display_name":"Ground truth","level":2,"score":0.6700382232666016},{"id":"https://openalex.org/C184720557","wikidata":"https://www.wikidata.org/wiki/Q7825049","display_name":"Topology (electrical circuits)","level":2,"score":0.6353704929351807},{"id":"https://openalex.org/C2874115","wikidata":"https://www.wikidata.org/wiki/Q17099562","display_name":"Persistent homology","level":2,"score":0.5824358463287354},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.5595481395721436},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5521305799484253},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.5312630534172058},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.452314555644989},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.437175989151001},{"id":"https://openalex.org/C124504099","wikidata":"https://www.wikidata.org/wiki/Q56933","display_name":"Image segmentation","level":3,"score":0.4248640239238739},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.4131675064563751},{"id":"https://openalex.org/C128489963","wikidata":"https://www.wikidata.org/wiki/Q1187724","display_name":"Filtration (mathematics)","level":2,"score":0.41164273023605347},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3503395915031433},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.3436497151851654},{"id":"https://openalex.org/C202444582","wikidata":"https://www.wikidata.org/wiki/Q837863","display_name":"Pure mathematics","level":1,"score":0.1515336036682129},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.11171987652778625},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1016/j.bspc.2026.109512","is_oa":false,"landing_page_url":"https://doi.org/10.1016/j.bspc.2026.109512","pdf_url":null,"source":{"id":"https://openalex.org/S8427965","display_name":"Biomedical Signal Processing and Control","issn_l":"1746-8094","issn":["1746-8094","1746-8108"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Biomedical Signal Processing and Control","raw_type":"journal-article"},{"id":"pmh:oai:arXiv.org:2307.03137","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2307.03137","pdf_url":"https://arxiv.org/pdf/2307.03137","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"text"},{"id":"doi:10.48550/arxiv.2307.03137","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.2307.03137","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"Preprint"}],"best_oa_location":{"id":"pmh:oai:arXiv.org:2307.03137","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2307.03137","pdf_url":"https://arxiv.org/pdf/2307.03137","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"text"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G5126484213","display_name":"Medikal G\u00f6r\u00fcnt\u00fclerde Nesne B\u00f6l\u00fctlemesi I\u00e7in \u015eekil-Koruyan Derin Sinir A\u011flar\u0131","funder_award_id":"120E497","funder_id":"https://openalex.org/F4320322626","funder_display_name":"T\u00fcrkiye Bilimsel ve Teknolojik Ara\u015ft\u0131rma Kurumu"}],"funders":[{"id":"https://openalex.org/F4320322626","display_name":"T\u00fcrkiye Bilimsel ve Teknolojik Ara\u015ft\u0131rma Kurumu","ror":"https://ror.org/04w9kkr77"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4383605166.pdf"},"referenced_works_count":19,"referenced_works":["https://openalex.org/W1901129140","https://openalex.org/W2963351448","https://openalex.org/W3048653896","https://openalex.org/W2978005227","https://openalex.org/W3183469449","https://openalex.org/W3207168755","https://openalex.org/W1991566301","https://openalex.org/W3185140035","https://openalex.org/W3043832855","https://openalex.org/W3216938466","https://openalex.org/W3109144862","https://openalex.org/W2963270775","https://openalex.org/W3174708193","https://openalex.org/W4408568272","https://openalex.org/W4406015449","https://openalex.org/W2963129226","https://openalex.org/W4312838128","https://openalex.org/W2962914239","https://openalex.org/W2966434031"],"related_works":["https://openalex.org/W3128725485","https://openalex.org/W2797851727","https://openalex.org/W3159198591","https://openalex.org/W4293460689","https://openalex.org/W4281250841","https://openalex.org/W2086392476","https://openalex.org/W4224300916","https://openalex.org/W4390571867","https://openalex.org/W1997160662","https://openalex.org/W1522196789"],"abstract_inverted_index":null,"counts_by_year":[{"year":2026,"cited_by_count":2}],"updated_date":"2026-07-01T08:55:40.977307","created_date":"2023-07-08T00:00:00"}
