{"id":"https://openalex.org/W7166724049","doi":"https://doi.org/10.1016/j.biosystems.2026.105863","title":"Forward\u2013backward gene expression binarization for boolean state inference over a known regulatory network","display_name":"Forward\u2013backward gene expression binarization for boolean state inference over a known regulatory network","publication_year":2026,"publication_date":"2026-06-30","ids":{"openalex":"https://openalex.org/W7166724049","doi":"https://doi.org/10.1016/j.biosystems.2026.105863","pmid":"https://pubmed.ncbi.nlm.nih.gov/42379340"},"language":"en","primary_location":{"id":"doi:10.1016/j.biosystems.2026.105863","is_oa":false,"landing_page_url":"https://doi.org/10.1016/j.biosystems.2026.105863","pdf_url":null,"source":{"id":"https://openalex.org/S99347777","display_name":"Biosystems","issn_l":"0303-2647","issn":["0303-2647","1872-8324"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BioSystems","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5068643472","display_name":"Ismail Belgacem","orcid":"https://orcid.org/0000-0002-4895-6832"},"institutions":[{"id":"https://openalex.org/I277688954","display_name":"Universit\u00e9 Paris-Saclay","ror":"https://ror.org/03xjwb503","country_code":"FR","type":"education","lineage":["https://openalex.org/I277688954"]},{"id":"https://openalex.org/I4210107733","display_name":"Informatique, BioInformatique, Syst\u00e8mes Complexes","ror":"https://ror.org/01aqxgr98","country_code":"FR","type":"facility","lineage":["https://openalex.org/I277688954","https://openalex.org/I277688954","https://openalex.org/I4210107733","https://openalex.org/I88467170"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Ismail Belgacem","raw_affiliation_strings":["Independent Researcher, Mezaourou, Ghazaouet, Tlemcen, Algeria; IBISC, Univ Evry, Universit\u00e9 Paris-Saclay, 91025 Evry, France. Electronic address: ismail.belgacem.81@gmail.com"],"raw_orcid":"https://orcid.org/0000-0002-4895-6832","affiliations":[{"raw_affiliation_string":"Independent Researcher, Mezaourou, Ghazaouet, Tlemcen, Algeria; IBISC, Univ Evry, Universit\u00e9 Paris-Saclay, 91025 Evry, France. Electronic address: ismail.belgacem.81@gmail.com","institution_ids":["https://openalex.org/I277688954","https://openalex.org/I4210107733"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5107072435","display_name":"Franck Delaplace","orcid":"https://orcid.org/0000-0002-1035-7754"},"institutions":[{"id":"https://openalex.org/I277688954","display_name":"Universit\u00e9 Paris-Saclay","ror":"https://ror.org/03xjwb503","country_code":"FR","type":"education","lineage":["https://openalex.org/I277688954"]},{"id":"https://openalex.org/I4210107733","display_name":"Informatique, BioInformatique, Syst\u00e8mes Complexes","ror":"https://ror.org/01aqxgr98","country_code":"FR","type":"facility","lineage":["https://openalex.org/I277688954","https://openalex.org/I277688954","https://openalex.org/I4210107733","https://openalex.org/I88467170"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Franck Delaplace","raw_affiliation_strings":["Independent Researcher, Mezaourou, Ghazaouet, Tlemcen, Algeria; IBISC, Univ Evry, Universit\u00e9 Paris-Saclay, 91025 Evry, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Independent Researcher, Mezaourou, Ghazaouet, Tlemcen, Algeria; IBISC, Univ Evry, Universit\u00e9 Paris-Saclay, 91025 Evry, France","institution_ids":["https://openalex.org/I277688954","https://openalex.org/I4210107733"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5068643472"],"corresponding_institution_ids":["https://openalex.org/I277688954","https://openalex.org/I4210107733"],"apc_list":{"value":2700,"currency":"USD","value_usd":2700},"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.66551608,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"267","issue":null,"first_page":"105863","last_page":"105863"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.6985999941825867,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.6985999941825867,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.09619999676942825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.053199999034404755,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.7401000261306763},{"id":"https://openalex.org/keywords/gene-regulatory-network","display_name":"Gene regulatory network","score":0.6007000207901001},{"id":"https://openalex.org/keywords/state","display_name":"State (computer science)","score":0.5382999777793884},{"id":"https://openalex.org/keywords/expression","display_name":"Expression (computer science)","score":0.4957999885082245},{"id":"https://openalex.org/keywords/boolean-network","display_name":"Boolean network","score":0.4406000077724457},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.42340001463890076},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.38499999046325684},{"id":"https://openalex.org/keywords/regulation-of-gene-expression","display_name":"Regulation of gene expression","score":0.3490000069141388}],"concepts":[{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.7401000261306763},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6424000263214111},{"id":"https://openalex.org/C67339327","wikidata":"https://www.wikidata.org/wiki/Q1502576","display_name":"Gene regulatory network","level":4,"score":0.6007000207901001},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5759999752044678},{"id":"https://openalex.org/C48103436","wikidata":"https://www.wikidata.org/wiki/Q599031","display_name":"State (computer science)","level":2,"score":0.5382999777793884},{"id":"https://openalex.org/C90559484","wikidata":"https://www.wikidata.org/wiki/Q778379","display_name":"Expression (computer science)","level":2,"score":0.4957999885082245},{"id":"https://openalex.org/C134444547","wikidata":"https://www.wikidata.org/wiki/Q585230","display_name":"Boolean network","level":3,"score":0.4406000077724457},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.42340001463890076},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4189999997615814},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.38499999046325684},{"id":"https://openalex.org/C165864922","wikidata":"https://www.wikidata.org/wiki/Q411391","display_name":"Regulation of gene expression","level":3,"score":0.3490000069141388},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.34450000524520874},{"id":"https://openalex.org/C67499762","wikidata":"https://www.wikidata.org/wiki/Q4943358","display_name":"Boolean model","level":2,"score":0.3319999873638153},{"id":"https://openalex.org/C158465420","wikidata":"https://www.wikidata.org/wiki/Q1979515","display_name":"Boolean expression","level":3,"score":0.3310999870300293},{"id":"https://openalex.org/C33498276","wikidata":"https://www.wikidata.org/wiki/Q2138797","display_name":"Regulator gene","level":4,"score":0.29989999532699585},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.29260000586509705},{"id":"https://openalex.org/C196836630","wikidata":"https://www.wikidata.org/wiki/Q4753279","display_name":"And-inverter graph","level":4,"score":0.28780001401901245},{"id":"https://openalex.org/C3746660","wikidata":"https://www.wikidata.org/wiki/Q1068763","display_name":"Rule of inference","level":2,"score":0.27799999713897705},{"id":"https://openalex.org/C187455244","wikidata":"https://www.wikidata.org/wiki/Q942353","display_name":"Boolean function","level":2,"score":0.2750999927520752},{"id":"https://openalex.org/C2775930736","wikidata":"https://www.wikidata.org/wiki/Q7309708","display_name":"Regulatory state","level":3,"score":0.2644999921321869}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1016/j.biosystems.2026.105863","is_oa":false,"landing_page_url":"https://doi.org/10.1016/j.biosystems.2026.105863","pdf_url":null,"source":{"id":"https://openalex.org/S99347777","display_name":"Biosystems","issn_l":"0303-2647","issn":["0303-2647","1872-8324"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BioSystems","raw_type":"journal-article"},{"id":"pmid:42379340","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/42379340","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bio Systems","raw_type":"Journal Article"},{"id":"pmh:oai:HAL:hal-05682649v1","is_oa":false,"landing_page_url":"https://univ-evry.hal.science/hal-05682649","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BioSystems, 2026, 267, pp.105863. &#x27E8;10.1016/j.biosystems.2026.105863&#x27E9;","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320324191","display_name":"Genopole","ror":"https://ror.org/0380k9k47"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":62,"referenced_works":["https://openalex.org/W1538006201","https://openalex.org/W1927360907","https://openalex.org/W1966641487","https://openalex.org/W1974957391","https://openalex.org/W1985213899","https://openalex.org/W1988677906","https://openalex.org/W2008555978","https://openalex.org/W2012383776","https://openalex.org/W2013029756","https://openalex.org/W2018917950","https://openalex.org/W2020541351","https://openalex.org/W2024209903","https://openalex.org/W2037191141","https://openalex.org/W2042459594","https://openalex.org/W2047405192","https://openalex.org/W2049940924","https://openalex.org/W2054286320","https://openalex.org/W2057680108","https://openalex.org/W2061659241","https://openalex.org/W2073293307","https://openalex.org/W2074064799","https://openalex.org/W2075754351","https://openalex.org/W2080374853","https://openalex.org/W2084251771","https://openalex.org/W2105581244","https://openalex.org/W2108276292","https://openalex.org/W2112456256","https://openalex.org/W2117057692","https://openalex.org/W2120423816","https://openalex.org/W2124911220","https://openalex.org/W2128551987","https://openalex.org/W2129172482","https://openalex.org/W2136212770","https://openalex.org/W2140367530","https://openalex.org/W2142460132","https://openalex.org/W2156710421","https://openalex.org/W2158973107","https://openalex.org/W2162640412","https://openalex.org/W2170622332","https://openalex.org/W2171648521","https://openalex.org/W2258406303","https://openalex.org/W2510766325","https://openalex.org/W2511896561","https://openalex.org/W2518959324","https://openalex.org/W2584537474","https://openalex.org/W2593361980","https://openalex.org/W2598882867","https://openalex.org/W2615295356","https://openalex.org/W2742120708","https://openalex.org/W2755853637","https://openalex.org/W2759983049","https://openalex.org/W2906588180","https://openalex.org/W2912260118","https://openalex.org/W2927621939","https://openalex.org/W2964689826","https://openalex.org/W2974574494","https://openalex.org/W2981919939","https://openalex.org/W2982474113","https://openalex.org/W3003440392","https://openalex.org/W3018649179","https://openalex.org/W3088712245","https://openalex.org/W4410541928"],"related_works":[],"abstract_inverted_index":null,"counts_by_year":[],"updated_date":"2026-08-08T07:41:36.138363","created_date":"2026-07-01T00:00:00"}
