{"id":"https://openalex.org/W7137998400","doi":"https://doi.org/10.1016/j.biosystems.2026.105772","title":"Topology as biological code: information-driven evolution of neighborhood structures in self-organizing cellular systems","display_name":"Topology as biological code: information-driven evolution of neighborhood structures in self-organizing cellular systems","publication_year":2026,"publication_date":"2026-03-17","ids":{"openalex":"https://openalex.org/W7137998400","doi":"https://doi.org/10.1016/j.biosystems.2026.105772","pmid":"https://pubmed.ncbi.nlm.nih.gov/41856425"},"language":"en","primary_location":{"id":"doi:10.1016/j.biosystems.2026.105772","is_oa":false,"landing_page_url":"https://doi.org/10.1016/j.biosystems.2026.105772","pdf_url":null,"source":{"id":"https://openalex.org/S99347777","display_name":"Biosystems","issn_l":"0303-2647","issn":["0303-2647","1872-8324"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BioSystems","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5122726278","display_name":"Chaoran Chen","orcid":null},"institutions":[{"id":"https://openalex.org/I32820368","display_name":"Guangdong Polytechnic of Science and Technology","ror":"https://ror.org/01wq2p249","country_code":"CN","type":"education","lineage":["https://openalex.org/I32820368"]},{"id":"https://openalex.org/I4210165204","display_name":"Zhuhai Institute of Advanced Technology","ror":"https://ror.org/05r1mzq61","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210145761","https://openalex.org/I4210165204"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Chaoran Chen","raw_affiliation_strings":["School of Computer Science, Zhuhai College of Science and Technology, Zhuhai, China. Electronic address: andytaoity@gmail.com"],"raw_orcid":"https://orcid.org/0009-0009-5689-2398","affiliations":[{"raw_affiliation_string":"School of Computer Science, Zhuhai College of Science and Technology, Zhuhai, China. Electronic address: andytaoity@gmail.com","institution_ids":["https://openalex.org/I4210165204","https://openalex.org/I32820368"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5122726278"],"corresponding_institution_ids":["https://openalex.org/I32820368","https://openalex.org/I4210165204"],"apc_list":{"value":2700,"currency":"USD","value_usd":2700},"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.53702755,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"263","issue":null,"first_page":"105772","last_page":"105772"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12784","display_name":"Modular Robots and Swarm Intelligence","score":0.2732999920845032,"subfield":{"id":"https://openalex.org/subfields/2210","display_name":"Mechanical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T12784","display_name":"Modular Robots and Swarm Intelligence","score":0.2732999920845032,"subfield":{"id":"https://openalex.org/subfields/2210","display_name":"Mechanical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13362","display_name":"Slime Mold and Myxomycetes Research","score":0.12700000405311584,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12029","display_name":"DNA and Biological Computing","score":0.12680000066757202,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/topology","display_name":"Topology (electrical circuits)","score":0.6859999895095825},{"id":"https://openalex.org/keywords/network-topology","display_name":"Network topology","score":0.42179998755455017},{"id":"https://openalex.org/keywords/biological-evolution","display_name":"Biological evolution","score":0.27090001106262207},{"id":"https://openalex.org/keywords/general-topology","display_name":"General topology","score":0.26330000162124634},{"id":"https://openalex.org/keywords/topology-optimization","display_name":"Topology optimization","score":0.2522999942302704}],"concepts":[{"id":"https://openalex.org/C184720557","wikidata":"https://www.wikidata.org/wiki/Q7825049","display_name":"Topology (electrical circuits)","level":2,"score":0.6859999895095825},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5741999745368958},{"id":"https://openalex.org/C199845137","wikidata":"https://www.wikidata.org/wiki/Q145490","display_name":"Network topology","level":2,"score":0.42179998755455017},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.31459999084472656},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.289000004529953},{"id":"https://openalex.org/C2988562018","wikidata":"https://www.wikidata.org/wiki/Q1063","display_name":"Biological evolution","level":2,"score":0.27090001106262207},{"id":"https://openalex.org/C120314980","wikidata":"https://www.wikidata.org/wiki/Q180634","display_name":"Distributed computing","level":1,"score":0.27079999446868896},{"id":"https://openalex.org/C129089157","wikidata":"https://www.wikidata.org/wiki/Q621550","display_name":"General topology","level":3,"score":0.26330000162124634},{"id":"https://openalex.org/C189216461","wikidata":"https://www.wikidata.org/wiki/Q2443456","display_name":"Topology optimization","level":3,"score":0.2522999942302704},{"id":"https://openalex.org/C181576044","wikidata":"https://www.wikidata.org/wiki/Q4129926","display_name":"Computational topology","level":3,"score":0.24289999902248383}],"mesh":[{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005075","descriptor_name":"Biological Evolution","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005815","descriptor_name":"Genetic Code","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1016/j.biosystems.2026.105772","is_oa":false,"landing_page_url":"https://doi.org/10.1016/j.biosystems.2026.105772","pdf_url":null,"source":{"id":"https://openalex.org/S99347777","display_name":"Biosystems","issn_l":"0303-2647","issn":["0303-2647","1872-8324"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BioSystems","raw_type":"journal-article"},{"id":"pmid:41856425","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/41856425","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bio Systems","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.5416485667228699,"id":"https://metadata.un.org/sdg/11","display_name":"Sustainable cities and communities"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":16,"referenced_works":["https://openalex.org/W2000929155","https://openalex.org/W2032516423","https://openalex.org/W2035945778","https://openalex.org/W2036919025","https://openalex.org/W2053533908","https://openalex.org/W2071802245","https://openalex.org/W2075694080","https://openalex.org/W2078346780","https://openalex.org/W2086992004","https://openalex.org/W2104915249","https://openalex.org/W2143913979","https://openalex.org/W2149250320","https://openalex.org/W2161014448","https://openalex.org/W4386903041","https://openalex.org/W4388252848","https://openalex.org/W4413116398"],"related_works":[],"abstract_inverted_index":null,"counts_by_year":[],"updated_date":"2026-05-03T08:25:01.440150","created_date":"2026-03-18T00:00:00"}
