{"id":"https://openalex.org/W4361213968","doi":"https://doi.org/10.1016/j.biosystems.2023.104887","title":"C-Biomarker.net: A Cytoscape app for the identification of cancer biomarker genes from cores of large biomolecular networks","display_name":"C-Biomarker.net: A Cytoscape app for the identification of cancer biomarker genes from cores of large biomolecular networks","publication_year":2023,"publication_date":"2023-03-28","ids":{"openalex":"https://openalex.org/W4361213968","doi":"https://doi.org/10.1016/j.biosystems.2023.104887","pmid":"https://pubmed.ncbi.nlm.nih.gov/36990379"},"language":"en","primary_location":{"id":"doi:10.1016/j.biosystems.2023.104887","is_oa":false,"landing_page_url":"https://doi.org/10.1016/j.biosystems.2023.104887","pdf_url":null,"source":{"id":"https://openalex.org/S99347777","display_name":"Biosystems","issn_l":"0303-2647","issn":["0303-2647","1872-8324"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Biosystems","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5014223804","display_name":"Tien-Dzung Tran","orcid":"https://orcid.org/0000-0002-7966-6838"},"institutions":[{"id":"https://openalex.org/I45756140","display_name":"Hanoi University of Industry","ror":"https://ror.org/05hhz4s12","country_code":"VN","type":"education","lineage":["https://openalex.org/I45756140"]}],"countries":["VN"],"is_corresponding":true,"raw_author_name":"Tien-Dzung Tran","raw_affiliation_strings":["Complex Systems and Bioinformatics Lab, Hanoi University of Industry, Hanoi, Viet Nam; Department of Software Engineering, Faculty of Information and Communication Technology, Hanoi University of Industry, Hanoi, Viet Nam. Electronic address: trantd@haui.edu.vn","Complex Systems and Bioinformatics Lab, Hanoi University of Industry, Hanoi, Viet Nam","Department of Software Engineering, Faculty of Information and Communication Technology, Hanoi University of Industry, Hanoi, Viet Nam"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Complex Systems and Bioinformatics Lab, Hanoi University of Industry, Hanoi, Viet Nam; Department of Software Engineering, Faculty of Information and Communication Technology, Hanoi University of Industry, Hanoi, Viet Nam. Electronic address: trantd@haui.edu.vn","institution_ids":["https://openalex.org/I45756140"]},{"raw_affiliation_string":"Complex Systems and Bioinformatics Lab, Hanoi University of Industry, Hanoi, Viet Nam","institution_ids":["https://openalex.org/I45756140"]},{"raw_affiliation_string":"Department of Software Engineering, Faculty of Information and Communication Technology, Hanoi University of Industry, Hanoi, Viet Nam","institution_ids":["https://openalex.org/I45756140"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5004217840","display_name":"Minh-Tan Nguyen","orcid":"https://orcid.org/0009-0004-2321-2169"},"institutions":[{"id":"https://openalex.org/I45756140","display_name":"Hanoi University of Industry","ror":"https://ror.org/05hhz4s12","country_code":"VN","type":"education","lineage":["https://openalex.org/I45756140"]},{"id":"https://openalex.org/I67868205","display_name":"VNU University of Science","ror":"https://ror.org/05w54hk79","country_code":"VN","type":"education","lineage":["https://openalex.org/I177233841","https://openalex.org/I67868205"]}],"countries":["VN"],"is_corresponding":false,"raw_author_name":"Minh-Tan Nguyen","raw_affiliation_strings":["Complex Systems and Bioinformatics Lab, Hanoi University of Industry, Hanoi, Viet Nam; Center of Information - Library, Hanoi University of Industry, Hanoi, Viet Nam; VNU University of Engineering and Technology, Viet Nam","Center of Information \u2013 Library, Hanoi University of Industry, Hanoi, Viet Nam","Complex Systems and Bioinformatics Lab, Hanoi University of Industry, Hanoi, Viet Nam","VNU University of Engineering and Technology, Viet Nam"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Complex Systems and Bioinformatics Lab, Hanoi University of Industry, Hanoi, Viet Nam; Center of Information - Library, Hanoi University of Industry, Hanoi, Viet Nam; VNU University of Engineering and Technology, Viet Nam","institution_ids":["https://openalex.org/I45756140"]},{"raw_affiliation_string":"Center of Information \u2013 Library, Hanoi University of Industry, Hanoi, Viet Nam","institution_ids":["https://openalex.org/I45756140"]},{"raw_affiliation_string":"Complex Systems and Bioinformatics Lab, Hanoi University of Industry, Hanoi, Viet Nam","institution_ids":["https://openalex.org/I45756140"]},{"raw_affiliation_string":"VNU University of Engineering and Technology, Viet Nam","institution_ids":["https://openalex.org/I67868205"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5014223804"],"corresponding_institution_ids":["https://openalex.org/I45756140"],"apc_list":{"value":2700,"currency":"USD","value_usd":2700},"apc_paid":null,"fwci":0.4637,"has_fulltext":false,"cited_by_count":5,"citation_normalized_percentile":{"value":0.56987014,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":97},"biblio":{"volume":"226","issue":null,"first_page":"104887","last_page":"104887"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biomarker","display_name":"Biomarker","score":0.8637468218803406},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5926675200462341},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.558923065662384},{"id":"https://openalex.org/keywords/biomarker-discovery","display_name":"Biomarker discovery","score":0.5492862462997437},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5060092806816101},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.5007867813110352},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.4680979251861572},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.36700639128685},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3233809471130371},{"id":"https://openalex.org/keywords/proteomics","display_name":"Proteomics","score":0.2555394172668457},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.169927179813385}],"concepts":[{"id":"https://openalex.org/C2781197716","wikidata":"https://www.wikidata.org/wiki/Q864574","display_name":"Biomarker","level":2,"score":0.8637468218803406},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5926675200462341},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.558923065662384},{"id":"https://openalex.org/C124535831","wikidata":"https://www.wikidata.org/wiki/Q4915074","display_name":"Biomarker discovery","level":4,"score":0.5492862462997437},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5060092806816101},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.5007867813110352},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.4680979251861572},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.36700639128685},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3233809471130371},{"id":"https://openalex.org/C46111723","wikidata":"https://www.wikidata.org/wiki/Q471857","display_name":"Proteomics","level":3,"score":0.2555394172668457},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.169927179813385},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014408","descriptor_name":"Biomarkers, Tumor","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014408","descriptor_name":"Biomarkers, Tumor","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014408","descriptor_name":"Biomarkers, Tumor","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D063731","descriptor_name":"Mobile Applications","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D063731","descriptor_name":"Mobile Applications","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D063731","descriptor_name":"Mobile Applications","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1016/j.biosystems.2023.104887","is_oa":false,"landing_page_url":"https://doi.org/10.1016/j.biosystems.2023.104887","pdf_url":null,"source":{"id":"https://openalex.org/S99347777","display_name":"Biosystems","issn_l":"0303-2647","issn":["0303-2647","1872-8324"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Biosystems","raw_type":"journal-article"},{"id":"pmid:36990379","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36990379","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bio Systems","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G7123221975","display_name":"C\u00e1c ph\u01b0\u01a1ng ph\u00e1p ph\u00e2n t\u00edch d\u1eef li\u1ec7u h\u1ec7 gene li\u00ean quan \u0111\u1ebfn b\u1ec7nh ung th\u01b0 tr\u00ean m\u1ea1ng sinh h\u1ecdc.","funder_award_id":"102.04-2018.304","funder_id":"https://openalex.org/F4320309617","funder_display_name":"National Foundation for Science and Technology Development"}],"funders":[{"id":"https://openalex.org/F4320309617","display_name":"National Foundation for Science and Technology Development","ror":"https://ror.org/04rw64z44"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":53,"referenced_works":["https://openalex.org/W1965302838","https://openalex.org/W2008620264","https://openalex.org/W2039633981","https://openalex.org/W2040693453","https://openalex.org/W2066460740","https://openalex.org/W2067573658","https://openalex.org/W2075251588","https://openalex.org/W2080555578","https://openalex.org/W2083045667","https://openalex.org/W2084709428","https://openalex.org/W2086595847","https://openalex.org/W2096781310","https://openalex.org/W2105800735","https://openalex.org/W2112615110","https://openalex.org/W2122640498","https://openalex.org/W2133131640","https://openalex.org/W2147692258","https://openalex.org/W2149018921","https://openalex.org/W2237668363","https://openalex.org/W2270709317","https://openalex.org/W2546574318","https://openalex.org/W2561856491","https://openalex.org/W2580277522","https://openalex.org/W2594408608","https://openalex.org/W2740528188","https://openalex.org/W2796245584","https://openalex.org/W2809213232","https://openalex.org/W2893036042","https://openalex.org/W2895736867","https://openalex.org/W2895785599","https://openalex.org/W2971426842","https://openalex.org/W2986386290","https://openalex.org/W3006386970","https://openalex.org/W3016473318","https://openalex.org/W3036282262","https://openalex.org/W3088775058","https://openalex.org/W3094030817","https://openalex.org/W3099460852","https://openalex.org/W3122155762","https://openalex.org/W3128374585","https://openalex.org/W3129010341","https://openalex.org/W3140487600","https://openalex.org/W3182834856","https://openalex.org/W3188405687","https://openalex.org/W4200043040","https://openalex.org/W4206165702","https://openalex.org/W4220831425","https://openalex.org/W4232657441","https://openalex.org/W6681542089","https://openalex.org/W6740781911","https://openalex.org/W6792653285","https://openalex.org/W6806578059","https://openalex.org/W6809271837"],"related_works":["https://openalex.org/W112583468","https://openalex.org/W96119380","https://openalex.org/W3023706879","https://openalex.org/W4298030740","https://openalex.org/W2108949684","https://openalex.org/W4246773350","https://openalex.org/W1965976436","https://openalex.org/W2012655824","https://openalex.org/W3177170977","https://openalex.org/W2326771431"],"abstract_inverted_index":null,"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":3}],"updated_date":"2026-08-01T09:00:35.917206","created_date":"2023-03-31T00:00:00"}
