{"id":"https://openalex.org/W3047183845","doi":"https://doi.org/10.1016/j.biosystems.2020.104218","title":"Prediction and analysis of prokaryotic promoters based on sequence features","display_name":"Prediction and analysis of prokaryotic promoters based on sequence features","publication_year":2020,"publication_date":"2020-08-02","ids":{"openalex":"https://openalex.org/W3047183845","doi":"https://doi.org/10.1016/j.biosystems.2020.104218","mag":"3047183845","pmid":"https://pubmed.ncbi.nlm.nih.gov/32755610"},"language":"en","primary_location":{"id":"doi:10.1016/j.biosystems.2020.104218","is_oa":false,"landing_page_url":"https://doi.org/10.1016/j.biosystems.2020.104218","pdf_url":null,"source":{"id":"https://openalex.org/S99347777","display_name":"Biosystems","issn_l":"0303-2647","issn":["0303-2647","1872-8324"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Biosystems","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5054798085","display_name":"Xiao Liu","orcid":"https://orcid.org/0000-0002-7042-3880"},"institutions":[{"id":"https://openalex.org/I158842170","display_name":"Chongqing University","ror":"https://ror.org/023rhb549","country_code":"CN","type":"education","lineage":["https://openalex.org/I158842170"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Xiao Liu","raw_affiliation_strings":["School of Microelectronics and Communication Engineering, Chongqing University, 174 ShaPingBa District, Chongqing, 400044, China. Electronic address: liuxiao@cqu.edu.cn","School of Microelectronics and Communication Engineering, Chongqing University, 174 ShaPingBa District, Chongqing, 400044, China"],"raw_orcid":"https://orcid.org/0000-0002-7042-3880","affiliations":[{"raw_affiliation_string":"School of Microelectronics and Communication Engineering, Chongqing University, 174 ShaPingBa District, Chongqing, 400044, China. Electronic address: liuxiao@cqu.edu.cn","institution_ids":["https://openalex.org/I158842170"]},{"raw_affiliation_string":"School of Microelectronics and Communication Engineering, Chongqing University, 174 ShaPingBa District, Chongqing, 400044, China","institution_ids":["https://openalex.org/I158842170"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020902186","display_name":"Zhirui Guo","orcid":"https://orcid.org/0000-0003-0332-7159"},"institutions":[{"id":"https://openalex.org/I158842170","display_name":"Chongqing University","ror":"https://ror.org/023rhb549","country_code":"CN","type":"education","lineage":["https://openalex.org/I158842170"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhirui Guo","raw_affiliation_strings":["School of Microelectronics and Communication Engineering, Chongqing University, 174 ShaPingBa District, Chongqing, 400044, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Microelectronics and Communication Engineering, Chongqing University, 174 ShaPingBa District, Chongqing, 400044, China","institution_ids":["https://openalex.org/I158842170"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101728650","display_name":"Ting He","orcid":"https://orcid.org/0000-0002-2856-9501"},"institutions":[{"id":"https://openalex.org/I158842170","display_name":"Chongqing University","ror":"https://ror.org/023rhb549","country_code":"CN","type":"education","lineage":["https://openalex.org/I158842170"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ting He","raw_affiliation_strings":["School of Microelectronics and Communication Engineering, Chongqing University, 174 ShaPingBa District, Chongqing, 400044, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Microelectronics and Communication Engineering, Chongqing University, 174 ShaPingBa District, Chongqing, 400044, China","institution_ids":["https://openalex.org/I158842170"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5044133558","display_name":"Meixiang Ren","orcid":null},"institutions":[{"id":"https://openalex.org/I158842170","display_name":"Chongqing University","ror":"https://ror.org/023rhb549","country_code":"CN","type":"education","lineage":["https://openalex.org/I158842170"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Meixiang Ren","raw_affiliation_strings":["School of Microelectronics and Communication Engineering, Chongqing University, 174 ShaPingBa District, Chongqing, 400044, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Microelectronics and Communication Engineering, Chongqing University, 174 ShaPingBa District, Chongqing, 400044, China","institution_ids":["https://openalex.org/I158842170"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5054798085"],"corresponding_institution_ids":["https://openalex.org/I158842170"],"apc_list":{"value":2700,"currency":"USD","value_usd":2700},"apc_paid":null,"fwci":0.5016,"has_fulltext":false,"cited_by_count":6,"citation_normalized_percentile":{"value":0.62952059,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"197","issue":null,"first_page":"104218","last_page":"104218"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/promoter","display_name":"Promoter","score":0.8277065753936768},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5994232892990112},{"id":"https://openalex.org/keywords/bacillus-subtilis","display_name":"Bacillus subtilis","score":0.564220666885376},{"id":"https://openalex.org/keywords/classifier","display_name":"Classifier (UML)","score":0.5553954243659973},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5103678107261658},{"id":"https://openalex.org/keywords/gene-prediction","display_name":"Gene prediction","score":0.44413670897483826},{"id":"https://openalex.org/keywords/sequence-alignment","display_name":"Sequence alignment","score":0.4334390163421631},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.42970842123031616},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.38779765367507935},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3766040802001953},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.3749227821826935},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.35188984870910645},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3372824192047119},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.30264729261398315},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.16128501296043396},{"id":"https://openalex.org/keywords/peptide-sequence","display_name":"Peptide sequence","score":0.14465457201004028}],"concepts":[{"id":"https://openalex.org/C101762097","wikidata":"https://www.wikidata.org/wiki/Q224093","display_name":"Promoter","level":4,"score":0.8277065753936768},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5994232892990112},{"id":"https://openalex.org/C2777272437","wikidata":"https://www.wikidata.org/wiki/Q131238","display_name":"Bacillus subtilis","level":3,"score":0.564220666885376},{"id":"https://openalex.org/C95623464","wikidata":"https://www.wikidata.org/wiki/Q1096149","display_name":"Classifier (UML)","level":2,"score":0.5553954243659973},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5103678107261658},{"id":"https://openalex.org/C105565629","wikidata":"https://www.wikidata.org/wiki/Q1248292","display_name":"Gene prediction","level":4,"score":0.44413670897483826},{"id":"https://openalex.org/C45484198","wikidata":"https://www.wikidata.org/wiki/Q827246","display_name":"Sequence alignment","level":4,"score":0.4334390163421631},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.42970842123031616},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.38779765367507935},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3766040802001953},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.3749227821826935},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.35188984870910645},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3372824192047119},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.30264729261398315},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.16128501296043396},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.14465457201004028},{"id":"https://openalex.org/C523546767","wikidata":"https://www.wikidata.org/wiki/Q10876","display_name":"Bacteria","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D001412","descriptor_name":"Bacillus subtilis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001412","descriptor_name":"Bacillus subtilis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001412","descriptor_name":"Bacillus subtilis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001482","descriptor_name":"Base Composition","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001482","descriptor_name":"Base Composition","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001482","descriptor_name":"Base Composition","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011401","descriptor_name":"Promoter Regions, Genetic","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011401","descriptor_name":"Promoter Regions, Genetic","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011401","descriptor_name":"Promoter Regions, Genetic","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011550","descriptor_name":"Pseudomonas aeruginosa","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011550","descriptor_name":"Pseudomonas aeruginosa","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011550","descriptor_name":"Pseudomonas aeruginosa","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019277","descriptor_name":"Entropy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019277","descriptor_name":"Entropy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019277","descriptor_name":"Entropy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1016/j.biosystems.2020.104218","is_oa":false,"landing_page_url":"https://doi.org/10.1016/j.biosystems.2020.104218","pdf_url":null,"source":{"id":"https://openalex.org/S99347777","display_name":"Biosystems","issn_l":"0303-2647","issn":["0303-2647","1872-8324"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Biosystems","raw_type":"journal-article"},{"id":"pmid:32755610","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32755610","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bio Systems","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.6700000166893005,"id":"https://metadata.un.org/sdg/15","display_name":"Life in Land"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320321135","display_name":"Chongqing University","ror":"https://ror.org/023rhb549"},{"id":"https://openalex.org/F4320321550","display_name":"Chongqing Science and Technology Commission","ror":"https://ror.org/05w9erc61"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":37,"referenced_works":["https://openalex.org/W1580341506","https://openalex.org/W1825157170","https://openalex.org/W1976882280","https://openalex.org/W1998525134","https://openalex.org/W2006767397","https://openalex.org/W2011548771","https://openalex.org/W2018527742","https://openalex.org/W2059851411","https://openalex.org/W2083122216","https://openalex.org/W2093266575","https://openalex.org/W2117357746","https://openalex.org/W2119309676","https://openalex.org/W2124266758","https://openalex.org/W2125628797","https://openalex.org/W2139516179","https://openalex.org/W2142784993","https://openalex.org/W2143908786","https://openalex.org/W2152979636","https://openalex.org/W2157467374","https://openalex.org/W2159833474","https://openalex.org/W2172141254","https://openalex.org/W2232370058","https://openalex.org/W2332754646","https://openalex.org/W2379960590","https://openalex.org/W2504311395","https://openalex.org/W2532495932","https://openalex.org/W2582743722","https://openalex.org/W2587688848","https://openalex.org/W2760930003","https://openalex.org/W2767971678","https://openalex.org/W2799963032","https://openalex.org/W2950980382","https://openalex.org/W2963739921","https://openalex.org/W6665389906","https://openalex.org/W6702278534","https://openalex.org/W6745068270","https://openalex.org/W7055161165"],"related_works":["https://openalex.org/W4293061103","https://openalex.org/W3041516390","https://openalex.org/W1548672655","https://openalex.org/W3025683560","https://openalex.org/W2301778769","https://openalex.org/W4238511776","https://openalex.org/W2359352982","https://openalex.org/W2758340467","https://openalex.org/W2354946010","https://openalex.org/W2382107673"],"abstract_inverted_index":null,"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":3}],"updated_date":"2026-01-13T01:12:25.745995","created_date":"2025-10-10T00:00:00"}