{"id":"https://openalex.org/W3019461979","doi":"https://doi.org/10.1016/j.biosystems.2020.104150","title":"libsbmljs\u2014Enabling web-based SBML tools","display_name":"libsbmljs\u2014Enabling web-based SBML tools","publication_year":2020,"publication_date":"2020-04-24","ids":{"openalex":"https://openalex.org/W3019461979","doi":"https://doi.org/10.1016/j.biosystems.2020.104150","mag":"3019461979"},"language":"en","primary_location":{"id":"doi:10.1016/j.biosystems.2020.104150","is_oa":false,"landing_page_url":"https://doi.org/10.1016/j.biosystems.2020.104150","pdf_url":null,"source":{"id":"https://openalex.org/S99347777","display_name":"Biosystems","issn_l":"0303-2647","issn":["0303-2647","1872-8324"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Biosystems","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7919167","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5035478017","display_name":"Kyle Medley","orcid":"https://orcid.org/0000-0002-9135-0844"},"institutions":[{"id":"https://openalex.org/I201448701","display_name":"University of Washington","ror":"https://ror.org/00cvxb145","country_code":"US","type":"education","lineage":["https://openalex.org/I201448701"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"J. Kyle Medley","raw_affiliation_strings":["Department of Bioengineering, University of Washington, Box 355061, Seattle, WA 98195-5061, United States of America"],"affiliations":[{"raw_affiliation_string":"Department of Bioengineering, University of Washington, Box 355061, Seattle, WA 98195-5061, United States of America","institution_ids":["https://openalex.org/I201448701"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038863305","display_name":"Joseph L. Hellerstein","orcid":"https://orcid.org/0000-0003-0802-4069"},"institutions":[{"id":"https://openalex.org/I201448701","display_name":"University of Washington","ror":"https://ror.org/00cvxb145","country_code":"US","type":"education","lineage":["https://openalex.org/I201448701"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Joseph Hellerstein","raw_affiliation_strings":["eScience Institute, University of Washington, Seattle, WA, United States of America"],"affiliations":[{"raw_affiliation_string":"eScience Institute, University of Washington, Seattle, WA, United States of America","institution_ids":["https://openalex.org/I201448701"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5044484291","display_name":"Herbert M. Sauro","orcid":"https://orcid.org/0000-0002-3659-6817"},"institutions":[{"id":"https://openalex.org/I201448701","display_name":"University of Washington","ror":"https://ror.org/00cvxb145","country_code":"US","type":"education","lineage":["https://openalex.org/I201448701"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Herbert M. Sauro","raw_affiliation_strings":["Department of Bioengineering, University of Washington, Box 355061, Seattle, WA 98195-5061, United States of America"],"affiliations":[{"raw_affiliation_string":"Department of Bioengineering, University of Washington, Box 355061, Seattle, WA 98195-5061, United States of America","institution_ids":["https://openalex.org/I201448701"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5035478017"],"corresponding_institution_ids":["https://openalex.org/I201448701"],"apc_list":{"value":2700,"currency":"USD","value_usd":2700},"apc_paid":null,"fwci":0.1657,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.48566515,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"195","issue":null,"first_page":"104150","last_page":"104150"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9894999861717224,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/sbml","display_name":"SBML","score":0.9579379558563232},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8196048736572266},{"id":"https://openalex.org/keywords/javascript","display_name":"JavaScript","score":0.7793300151824951},{"id":"https://openalex.org/keywords/scripting-language","display_name":"Scripting language","score":0.622758686542511},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.5835206508636475},{"id":"https://openalex.org/keywords/unobtrusive-javascript","display_name":"Unobtrusive JavaScript","score":0.5735342502593994},{"id":"https://openalex.org/keywords/web-application","display_name":"Web application","score":0.5679773092269897},{"id":"https://openalex.org/keywords/markup-language","display_name":"Markup language","score":0.4705911874771118},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.4518080949783325},{"id":"https://openalex.org/keywords/client-side-scripting","display_name":"Client-side scripting","score":0.4284916818141937},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.3371151089668274},{"id":"https://openalex.org/keywords/web-api","display_name":"Web API","score":0.27470579743385315},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.2388930320739746},{"id":"https://openalex.org/keywords/rich-internet-application","display_name":"Rich Internet application","score":0.23660048842430115},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.19991591572761536},{"id":"https://openalex.org/keywords/xml","display_name":"XML","score":0.13227877020835876}],"concepts":[{"id":"https://openalex.org/C87186988","wikidata":"https://www.wikidata.org/wiki/Q452197","display_name":"SBML","level":4,"score":0.9579379558563232},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8196048736572266},{"id":"https://openalex.org/C544833334","wikidata":"https://www.wikidata.org/wiki/Q2005","display_name":"JavaScript","level":2,"score":0.7793300151824951},{"id":"https://openalex.org/C61423126","wikidata":"https://www.wikidata.org/wiki/Q187432","display_name":"Scripting language","level":2,"score":0.622758686542511},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.5835206508636475},{"id":"https://openalex.org/C198240166","wikidata":"https://www.wikidata.org/wiki/Q2298909","display_name":"Unobtrusive JavaScript","level":4,"score":0.5735342502593994},{"id":"https://openalex.org/C118643609","wikidata":"https://www.wikidata.org/wiki/Q189210","display_name":"Web application","level":2,"score":0.5679773092269897},{"id":"https://openalex.org/C45874996","wikidata":"https://www.wikidata.org/wiki/Q37045","display_name":"Markup language","level":3,"score":0.4705911874771118},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.4518080949783325},{"id":"https://openalex.org/C195274430","wikidata":"https://www.wikidata.org/wiki/Q1650567","display_name":"Client-side scripting","level":5,"score":0.4284916818141937},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.3371151089668274},{"id":"https://openalex.org/C127613066","wikidata":"https://www.wikidata.org/wiki/Q557770","display_name":"Web API","level":4,"score":0.27470579743385315},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.2388930320739746},{"id":"https://openalex.org/C103048170","wikidata":"https://www.wikidata.org/wiki/Q725485","display_name":"Rich Internet application","level":3,"score":0.23660048842430115},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.19991591572761536},{"id":"https://openalex.org/C8797682","wikidata":"https://www.wikidata.org/wiki/Q2115","display_name":"XML","level":2,"score":0.13227877020835876}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1016/j.biosystems.2020.104150","is_oa":false,"landing_page_url":"https://doi.org/10.1016/j.biosystems.2020.104150","pdf_url":null,"source":{"id":"https://openalex.org/S99347777","display_name":"Biosystems","issn_l":"0303-2647","issn":["0303-2647","1872-8324"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Biosystems","raw_type":"journal-article"},{"id":"pmh:oai:pubmedcentral.nih.gov:7919167","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7919167","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Biosystems","raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:pubmedcentral.nih.gov:7919167","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7919167","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Biosystems","raw_type":"Text"},"sustainable_development_goals":[{"score":0.550000011920929,"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9"}],"awards":[{"id":"https://openalex.org/G114059409","display_name":null,"funder_award_id":"P41EB023912","funder_id":"https://openalex.org/F4320337363","funder_display_name":"National Institute of Biomedical Imaging and Bioengineering"},{"id":"https://openalex.org/G4138832977","display_name":null,"funder_award_id":"#3835","funder_id":"https://openalex.org/F4320306202","funder_display_name":"Gordon and Betty Moore Foundation"},{"id":"https://openalex.org/G5539405233","display_name":null,"funder_award_id":"GM123032-01A1","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G8633427868","display_name":null,"funder_award_id":"U01HL122199-02","funder_id":"https://openalex.org/F4320337338","funder_display_name":"National Heart, Lung, and Blood Institute"}],"funders":[{"id":"https://openalex.org/F4320306151","display_name":"Alfred P. Sloan Foundation","ror":"https://ror.org/052csg198"},{"id":"https://openalex.org/F4320306202","display_name":"Gordon and Betty Moore Foundation","ror":"https://ror.org/006wxqw41"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337338","display_name":"National Heart, Lung, and Blood Institute","ror":"https://ror.org/012pb6c26"},{"id":"https://openalex.org/F4320337363","display_name":"National Institute of Biomedical Imaging and Bioengineering","ror":"https://ror.org/00372qc85"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":26,"referenced_works":["https://openalex.org/W10911613","https://openalex.org/W1645305843","https://openalex.org/W1665355332","https://openalex.org/W1976812345","https://openalex.org/W1995504856","https://openalex.org/W2075213059","https://openalex.org/W2078734278","https://openalex.org/W2098367419","https://openalex.org/W2107062718","https://openalex.org/W2114124738","https://openalex.org/W2127020923","https://openalex.org/W2134221731","https://openalex.org/W2147472054","https://openalex.org/W2150908245","https://openalex.org/W2156487548","https://openalex.org/W2159739447","https://openalex.org/W2160751597","https://openalex.org/W2162144833","https://openalex.org/W2179127114","https://openalex.org/W2202347610","https://openalex.org/W2276489244","https://openalex.org/W2580869787","https://openalex.org/W2791048175","https://openalex.org/W2802438470","https://openalex.org/W2901284989","https://openalex.org/W4238101851"],"related_works":["https://openalex.org/W2337406499","https://openalex.org/W2214197538","https://openalex.org/W2614015876","https://openalex.org/W2487497196","https://openalex.org/W2500345013","https://openalex.org/W1577029555","https://openalex.org/W2475037646","https://openalex.org/W2225555018","https://openalex.org/W2931917181","https://openalex.org/W3019461979"],"abstract_inverted_index":null,"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2020,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2020-05-01T00:00:00"}
