{"id":"https://openalex.org/W2753544847","doi":"https://doi.org/10.1016/j.biosystems.2017.08.005","title":"INDEX: Incremental depth extension approach for protein\u2013protein interaction networks alignment","display_name":"INDEX: Incremental depth extension approach for protein\u2013protein interaction networks alignment","publication_year":2017,"publication_date":"2017-08-30","ids":{"openalex":"https://openalex.org/W2753544847","doi":"https://doi.org/10.1016/j.biosystems.2017.08.005","mag":"2753544847","pmid":"https://pubmed.ncbi.nlm.nih.gov/28860070"},"language":"en","primary_location":{"id":"doi:10.1016/j.biosystems.2017.08.005","is_oa":false,"landing_page_url":"https://doi.org/10.1016/j.biosystems.2017.08.005","pdf_url":null,"source":{"id":"https://openalex.org/S99347777","display_name":"Biosystems","issn_l":"0303-2647","issn":["0303-2647","1872-8324"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Biosystems","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5012178423","display_name":"Abolfazl Mir","orcid":null},"institutions":[{"id":"https://openalex.org/I183859904","display_name":"Islamic Azad University, Mashhad","ror":"https://ror.org/00bvysh61","country_code":"IR","type":"education","lineage":["https://openalex.org/I110525433","https://openalex.org/I183859904"]}],"countries":["IR"],"is_corresponding":true,"raw_author_name":"Abolfazl Mir","raw_affiliation_strings":["Department of Computer Software Engineering, Mashhad Branch, Islamic Azad University, Mashhad, Iran. Electronic address: mir@aut.ac.ir","Department of Computer Software Engineering, Mashhad Branch, Islamic Azad University, Mashhad, Iran"],"affiliations":[{"raw_affiliation_string":"Department of Computer Software Engineering, Mashhad Branch, Islamic Azad University, Mashhad, Iran. Electronic address: mir@aut.ac.ir","institution_ids":[]},{"raw_affiliation_string":"Department of Computer Software Engineering, Mashhad Branch, Islamic Azad University, Mashhad, Iran","institution_ids":["https://openalex.org/I183859904"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000670364","display_name":"Mahmoud Naghibzadeh","orcid":null},"institutions":[{"id":"https://openalex.org/I86958956","display_name":"Ferdowsi University of Mashhad","ror":"https://ror.org/00g6ka752","country_code":"IR","type":"education","lineage":["https://openalex.org/I86958956"]}],"countries":["IR"],"is_corresponding":false,"raw_author_name":"Mahmoud Naghibzadeh","raw_affiliation_strings":["Department of Computer Engineering, Ferdowsi University of Mashhad, Mashhad, Iran"],"affiliations":[{"raw_affiliation_string":"Department of Computer Engineering, Ferdowsi University of Mashhad, Mashhad, Iran","institution_ids":["https://openalex.org/I86958956"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5054049469","display_name":"Nayyereh Saadati","orcid":"https://orcid.org/0000-0002-4589-8091"},"institutions":[{"id":"https://openalex.org/I165560825","display_name":"Mashhad University of Medical Sciences","ror":"https://ror.org/04sfka033","country_code":"IR","type":"education","lineage":["https://openalex.org/I165560825"]},{"id":"https://openalex.org/I4210158832","display_name":"Ghaem Hospital","ror":"https://ror.org/05n9fs062","country_code":"IR","type":"healthcare","lineage":["https://openalex.org/I165560825","https://openalex.org/I4210158832"]}],"countries":["IR"],"is_corresponding":false,"raw_author_name":"Nayyereh Saadati","raw_affiliation_strings":["Department of Internal Medicine, Ghaem Hospital, Mashhad University of Medical Sciences, Mashhad, Iran"],"affiliations":[{"raw_affiliation_string":"Department of Internal Medicine, Ghaem Hospital, Mashhad University of Medical Sciences, Mashhad, Iran","institution_ids":["https://openalex.org/I4210158832","https://openalex.org/I165560825"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5012178423"],"corresponding_institution_ids":["https://openalex.org/I183859904"],"apc_list":{"value":2700,"currency":"USD","value_usd":2700},"apc_paid":null,"fwci":0.7571,"has_fulltext":false,"cited_by_count":23,"citation_normalized_percentile":{"value":0.70689673,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"162","issue":null,"first_page":"24","last_page":"34"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9948999881744385,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9921000003814697,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/executable","display_name":"Executable","score":0.8378505706787109},{"id":"https://openalex.org/keywords/correctness","display_name":"Correctness","score":0.8082162737846375},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7436164617538452},{"id":"https://openalex.org/keywords/matching","display_name":"Matching (statistics)","score":0.5930086374282837},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5904049277305603},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5659032464027405},{"id":"https://openalex.org/keywords/index","display_name":"Index (typography)","score":0.5602439641952515},{"id":"https://openalex.org/keywords/biological-network","display_name":"Biological network","score":0.4825226962566376},{"id":"https://openalex.org/keywords/network-topology","display_name":"Network topology","score":0.45538875460624695},{"id":"https://openalex.org/keywords/extension","display_name":"Extension (predicate logic)","score":0.43862244486808777},{"id":"https://openalex.org/keywords/enhanced-data-rates-for-gsm-evolution","display_name":"Enhanced Data Rates for GSM Evolution","score":0.4127231538295746},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.35692131519317627},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.34586265683174133},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2407171130180359},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.18153074383735657}],"concepts":[{"id":"https://openalex.org/C160145156","wikidata":"https://www.wikidata.org/wiki/Q778586","display_name":"Executable","level":2,"score":0.8378505706787109},{"id":"https://openalex.org/C55439883","wikidata":"https://www.wikidata.org/wiki/Q360812","display_name":"Correctness","level":2,"score":0.8082162737846375},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7436164617538452},{"id":"https://openalex.org/C165064840","wikidata":"https://www.wikidata.org/wiki/Q1321061","display_name":"Matching (statistics)","level":2,"score":0.5930086374282837},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5904049277305603},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5659032464027405},{"id":"https://openalex.org/C2777382242","wikidata":"https://www.wikidata.org/wiki/Q6017816","display_name":"Index (typography)","level":2,"score":0.5602439641952515},{"id":"https://openalex.org/C28225019","wikidata":"https://www.wikidata.org/wiki/Q4915005","display_name":"Biological network","level":2,"score":0.4825226962566376},{"id":"https://openalex.org/C199845137","wikidata":"https://www.wikidata.org/wiki/Q145490","display_name":"Network topology","level":2,"score":0.45538875460624695},{"id":"https://openalex.org/C2778029271","wikidata":"https://www.wikidata.org/wiki/Q5421931","display_name":"Extension (predicate logic)","level":2,"score":0.43862244486808777},{"id":"https://openalex.org/C162307627","wikidata":"https://www.wikidata.org/wiki/Q204833","display_name":"Enhanced Data Rates for GSM Evolution","level":2,"score":0.4127231538295746},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.35692131519317627},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.34586265683174133},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2407171130180359},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.18153074383735657},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.0},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1016/j.biosystems.2017.08.005","is_oa":false,"landing_page_url":"https://doi.org/10.1016/j.biosystems.2017.08.005","pdf_url":null,"source":{"id":"https://openalex.org/S99347777","display_name":"Biosystems","issn_l":"0303-2647","issn":["0303-2647","1872-8324"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Biosystems","raw_type":"journal-article"},{"id":"pmid:28860070","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/28860070","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bio Systems","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/17","display_name":"Partnerships for the goals","score":0.4300000071525574}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":57,"referenced_works":["https://openalex.org/W1490161904","https://openalex.org/W1495712943","https://openalex.org/W1518994209","https://openalex.org/W1527979595","https://openalex.org/W1659833910","https://openalex.org/W1686696692","https://openalex.org/W1969153299","https://openalex.org/W1984209790","https://openalex.org/W2017894671","https://openalex.org/W2028111526","https://openalex.org/W2037036397","https://openalex.org/W2039616005","https://openalex.org/W2039872058","https://openalex.org/W2043795984","https://openalex.org/W2056124433","https://openalex.org/W2081607470","https://openalex.org/W2083910508","https://openalex.org/W2092986233","https://openalex.org/W2096801391","https://openalex.org/W2099431679","https://openalex.org/W2101181377","https://openalex.org/W2107427454","https://openalex.org/W2111795091","https://openalex.org/W2116117181","https://openalex.org/W2116447934","https://openalex.org/W2117540545","https://openalex.org/W2118853019","https://openalex.org/W2119151462","https://openalex.org/W2127957894","https://openalex.org/W2128408632","https://openalex.org/W2130237248","https://openalex.org/W2136316164","https://openalex.org/W2137648512","https://openalex.org/W2140084895","https://openalex.org/W2141185847","https://openalex.org/W2142678478","https://openalex.org/W2149037310","https://openalex.org/W2155834877","https://openalex.org/W2160144441","https://openalex.org/W2160556205","https://openalex.org/W2167222948","https://openalex.org/W2171081680","https://openalex.org/W2171108134","https://openalex.org/W2231462346","https://openalex.org/W2243244968","https://openalex.org/W2333347607","https://openalex.org/W2337217549","https://openalex.org/W2343534129","https://openalex.org/W2415516439","https://openalex.org/W2915536738","https://openalex.org/W4243762493","https://openalex.org/W6629767332","https://openalex.org/W6631060950","https://openalex.org/W6655043973","https://openalex.org/W6657558948","https://openalex.org/W6689639882","https://openalex.org/W6690731163"],"related_works":["https://openalex.org/W2110485810","https://openalex.org/W3095260983","https://openalex.org/W4287702948","https://openalex.org/W1534871961","https://openalex.org/W2797160649","https://openalex.org/W2056069438","https://openalex.org/W2753544847","https://openalex.org/W2085691404","https://openalex.org/W1856289672","https://openalex.org/W2894024364"],"abstract_inverted_index":null,"counts_by_year":[{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":9},{"year":2020,"cited_by_count":4},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":1}],"updated_date":"2026-01-13T01:12:25.745995","created_date":"2025-10-10T00:00:00"}
