{"id":"https://openalex.org/W2059686851","doi":"https://doi.org/10.1016/j.biosystems.2014.06.009","title":"RPPApipe: A pipeline for the analysis of reverse-phase protein array data","display_name":"RPPApipe: A pipeline for the analysis of reverse-phase protein array data","publication_year":2014,"publication_date":"2014-06-18","ids":{"openalex":"https://openalex.org/W2059686851","doi":"https://doi.org/10.1016/j.biosystems.2014.06.009","mag":"2059686851","pmid":"https://pubmed.ncbi.nlm.nih.gov/24951946"},"language":"en","primary_location":{"id":"doi:10.1016/j.biosystems.2014.06.009","is_oa":false,"landing_page_url":"https://doi.org/10.1016/j.biosystems.2014.06.009","pdf_url":null,"source":{"id":"https://openalex.org/S99347777","display_name":"Biosystems","issn_l":"0303-2647","issn":["0303-2647","1872-8324"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Biosystems","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5108094949","display_name":"Johannes Eichner","orcid":null},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Johannes Eichner","raw_affiliation_strings":["Center for Bioinformatics Tuebingen (ZBIT), University of Tuebingen, T\u00fcbingen 72076, Germany. Electronic address: johannes.eichner@uni-tuebingen.de"],"affiliations":[{"raw_affiliation_string":"Center for Bioinformatics Tuebingen (ZBIT), University of Tuebingen, T\u00fcbingen 72076, Germany. Electronic address: johannes.eichner@uni-tuebingen.de","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026706354","display_name":"Yvonne Heubach","orcid":null},"institutions":[{"id":"https://openalex.org/I4210111828","display_name":"Natural and Medical Sciences Institute","ror":"https://ror.org/01th1p123","country_code":"DE","type":"other","lineage":["https://openalex.org/I4210111828"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Yvonne Heubach","raw_affiliation_strings":["Natural and Medical Sciences Institute at the University of Tuebingen (NMI), Reutlingen 72770, Germany"],"affiliations":[{"raw_affiliation_string":"Natural and Medical Sciences Institute at the University of Tuebingen (NMI), Reutlingen 72770, Germany","institution_ids":["https://openalex.org/I4210111828"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044055998","display_name":"Manuel Ruff","orcid":null},"institutions":[{"id":"https://openalex.org/I8087733","display_name":"University of T\u00fcbingen","ror":"https://ror.org/03a1kwz48","country_code":"DE","type":"education","lineage":["https://openalex.org/I8087733"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Manuel Ruff","raw_affiliation_strings":["Center for Bioinformatics Tuebingen (ZBIT), University of Tuebingen, T\u00fcbingen 72076, Germany"],"affiliations":[{"raw_affiliation_string":"Center for Bioinformatics Tuebingen (ZBIT), University of Tuebingen, T\u00fcbingen 72076, Germany","institution_ids":["https://openalex.org/I8087733"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087322987","display_name":"Hella Kohlhof","orcid":"https://orcid.org/0000-0001-8279-5203"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Hella Kohlhof","raw_affiliation_strings":["4SC AG, Planegg-Martinsried 82152, Germany"],"affiliations":[{"raw_affiliation_string":"4SC AG, Planegg-Martinsried 82152, Germany","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111790174","display_name":"Stefan Strobl","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Stefan Strobl","raw_affiliation_strings":["4SC AG, Planegg-Martinsried 82152, Germany"],"affiliations":[{"raw_affiliation_string":"4SC AG, Planegg-Martinsried 82152, Germany","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5104103564","display_name":"Barbara Mayer","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Barbara Mayer","raw_affiliation_strings":["SpheroTec GmbH, Planegg-Martinsried 82152, Germany"],"affiliations":[{"raw_affiliation_string":"SpheroTec GmbH, Planegg-Martinsried 82152, Germany","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080385779","display_name":"Michael Pawlak","orcid":"https://orcid.org/0000-0002-6094-7285"},"institutions":[{"id":"https://openalex.org/I4210111828","display_name":"Natural and Medical Sciences Institute","ror":"https://ror.org/01th1p123","country_code":"DE","type":"other","lineage":["https://openalex.org/I4210111828"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Michael Pawlak","raw_affiliation_strings":["Natural and Medical Sciences Institute at the University of Tuebingen (NMI), Reutlingen 72770, Germany"],"affiliations":[{"raw_affiliation_string":"Natural and Medical Sciences Institute at the University of Tuebingen (NMI), Reutlingen 72770, Germany","institution_ids":["https://openalex.org/I4210111828"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058234708","display_name":"Markus F. Templin","orcid":"https://orcid.org/0000-0002-6569-6489"},"institutions":[{"id":"https://openalex.org/I4210111828","display_name":"Natural and Medical Sciences Institute","ror":"https://ror.org/01th1p123","country_code":"DE","type":"other","lineage":["https://openalex.org/I4210111828"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Markus F. Templin","raw_affiliation_strings":["Natural and Medical Sciences Institute at the University of Tuebingen (NMI), Reutlingen 72770, Germany"],"affiliations":[{"raw_affiliation_string":"Natural and Medical Sciences Institute at the University of Tuebingen (NMI), Reutlingen 72770, Germany","institution_ids":["https://openalex.org/I4210111828"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5004958444","display_name":"Andreas Zell","orcid":"https://orcid.org/0000-0003-3299-2211"},"institutions":[{"id":"https://openalex.org/I8087733","display_name":"University of T\u00fcbingen","ror":"https://ror.org/03a1kwz48","country_code":"DE","type":"education","lineage":["https://openalex.org/I8087733"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Andreas Zell","raw_affiliation_strings":["Center for Bioinformatics Tuebingen (ZBIT), University of Tuebingen, T\u00fcbingen 72076, Germany"],"affiliations":[{"raw_affiliation_string":"Center for Bioinformatics Tuebingen (ZBIT), University of Tuebingen, T\u00fcbingen 72076, Germany","institution_ids":["https://openalex.org/I8087733"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5108094949"],"corresponding_institution_ids":[],"apc_list":{"value":2700,"currency":"USD","value_usd":2700},"apc_paid":null,"fwci":1.1373,"has_fulltext":false,"cited_by_count":13,"citation_normalized_percentile":{"value":0.77293044,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"122","issue":null,"first_page":"19","last_page":"24"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12867","display_name":"Advanced Biosensing Techniques and Applications","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12867","display_name":"Advanced Biosensing Techniques and Applications","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9959999918937683,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7113067507743835},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.6547170877456665},{"id":"https://openalex.org/keywords/bioconductor","display_name":"Bioconductor","score":0.6247763633728027},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.5540098547935486},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5072605013847351},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.4568536877632141},{"id":"https://openalex.org/keywords/toolbox","display_name":"Toolbox","score":0.445272296667099},{"id":"https://openalex.org/keywords/documentation","display_name":"Documentation","score":0.4434702694416046},{"id":"https://openalex.org/keywords/preprocessor","display_name":"Preprocessor","score":0.42713603377342224},{"id":"https://openalex.org/keywords/web-application","display_name":"Web application","score":0.42335209250450134},{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.4110236167907715},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.36487746238708496},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.2649940848350525},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.23629915714263916},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.19423136115074158},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.1007617712020874},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.09355127811431885}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7113067507743835},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.6547170877456665},{"id":"https://openalex.org/C2779694297","wikidata":"https://www.wikidata.org/wiki/Q2888953","display_name":"Bioconductor","level":3,"score":0.6247763633728027},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.5540098547935486},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5072605013847351},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.4568536877632141},{"id":"https://openalex.org/C2777655017","wikidata":"https://www.wikidata.org/wiki/Q1501161","display_name":"Toolbox","level":2,"score":0.445272296667099},{"id":"https://openalex.org/C56666940","wikidata":"https://www.wikidata.org/wiki/Q788790","display_name":"Documentation","level":2,"score":0.4434702694416046},{"id":"https://openalex.org/C34736171","wikidata":"https://www.wikidata.org/wiki/Q918333","display_name":"Preprocessor","level":2,"score":0.42713603377342224},{"id":"https://openalex.org/C118643609","wikidata":"https://www.wikidata.org/wiki/Q189210","display_name":"Web application","level":2,"score":0.42335209250450134},{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.4110236167907715},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.36487746238708496},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.2649940848350525},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.23629915714263916},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.19423136115074158},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.1007617712020874},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.09355127811431885},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D003627","descriptor_name":"Data Interpretation, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003627","descriptor_name":"Data Interpretation, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003627","descriptor_name":"Data Interpretation, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040081","descriptor_name":"Protein Array Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D040081","descriptor_name":"Protein Array Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D040081","descriptor_name":"Protein Array Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1016/j.biosystems.2014.06.009","is_oa":false,"landing_page_url":"https://doi.org/10.1016/j.biosystems.2014.06.009","pdf_url":null,"source":{"id":"https://openalex.org/S99347777","display_name":"Biosystems","issn_l":"0303-2647","issn":["0303-2647","1872-8324"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Biosystems","raw_type":"journal-article"},{"id":"pmid:24951946","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24951946","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bio Systems","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.49000000953674316,"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure"}],"awards":[{"id":"https://openalex.org/G1490570443","display_name":null,"funder_award_id":"0315384C","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"},{"id":"https://openalex.org/G6782187388","display_name":null,"funder_award_id":"0315756","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"}],"funders":[{"id":"https://openalex.org/F4320321114","display_name":"Bundesministerium f\u00fcr Bildung und Forschung","ror":"https://ror.org/04pz7b180"},{"id":"https://openalex.org/F4320326631","display_name":"Innovative Medicines Initiative","ror":"https://ror.org/019af4n30"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":16,"referenced_works":["https://openalex.org/W1979340580","https://openalex.org/W2013318867","https://openalex.org/W2068123273","https://openalex.org/W2081098333","https://openalex.org/W2102486637","https://openalex.org/W2120018526","https://openalex.org/W2124681904","https://openalex.org/W2138517852","https://openalex.org/W2149671003","https://openalex.org/W2149763665","https://openalex.org/W2155142785","https://openalex.org/W2157137649","https://openalex.org/W2163132655","https://openalex.org/W2172194140","https://openalex.org/W6670694061","https://openalex.org/W6682031450"],"related_works":["https://openalex.org/W2135678793","https://openalex.org/W2011682793","https://openalex.org/W2109288169","https://openalex.org/W2157684052","https://openalex.org/W2978247079","https://openalex.org/W2140163842","https://openalex.org/W2549786917","https://openalex.org/W3204758414","https://openalex.org/W2148708580","https://openalex.org/W1629903918"],"abstract_inverted_index":null,"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":1}],"updated_date":"2026-01-13T01:12:25.745995","created_date":"2025-10-10T00:00:00"}
