{"id":"https://openalex.org/W2139271231","doi":"https://doi.org/10.1016/j.biosystems.2008.03.010","title":"Validation and discovery from computational biology models","display_name":"Validation and discovery from computational biology models","publication_year":2008,"publication_date":"2008-04-12","ids":{"openalex":"https://openalex.org/W2139271231","doi":"https://doi.org/10.1016/j.biosystems.2008.03.010","mag":"2139271231","pmid":"https://pubmed.ncbi.nlm.nih.gov/18487010"},"language":"en","primary_location":{"id":"doi:10.1016/j.biosystems.2008.03.010","is_oa":false,"landing_page_url":"https://doi.org/10.1016/j.biosystems.2008.03.010","pdf_url":null,"source":{"id":"https://openalex.org/S99347777","display_name":"Biosystems","issn_l":"0303-2647","issn":["0303-2647","1872-8324"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Biosystems","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5111682179","display_name":"Mariam Kiran","orcid":null},"institutions":[{"id":"https://openalex.org/I91136226","display_name":"University of Sheffield","ror":"https://ror.org/05krs5044","country_code":"GB","type":"education","lineage":["https://openalex.org/I91136226"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Mariam Kiran","raw_affiliation_strings":["University of Sheffield, Department of Computer Science, Regent Court, 211 Portobello Street, Sheffield S1 4DP, United Kingdom. m.kiran@dcs.shef.ac.uk","University of Sheffield, Department of Computer Science, Regent Court, 211 Portobello Street, Sheffield, S1 4DP, United Kingdom#TAB#"],"affiliations":[{"raw_affiliation_string":"University of Sheffield, Department of Computer Science, Regent Court, 211 Portobello Street, Sheffield S1 4DP, United Kingdom. m.kiran@dcs.shef.ac.uk","institution_ids":["https://openalex.org/I91136226"]},{"raw_affiliation_string":"University of Sheffield, Department of Computer Science, Regent Court, 211 Portobello Street, Sheffield, S1 4DP, United Kingdom#TAB#","institution_ids":["https://openalex.org/I91136226"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100981400","display_name":"Simon Coakley","orcid":null},"institutions":[{"id":"https://openalex.org/I91136226","display_name":"University of Sheffield","ror":"https://ror.org/05krs5044","country_code":"GB","type":"education","lineage":["https://openalex.org/I91136226"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Simon Coakley","raw_affiliation_strings":["University of Sheffield, Department of Computer Science, Regent Court, 211 Portobello Street, Sheffield S1 4DP, United Kingdom","University of Sheffield, Department of Computer Science, Regent Court, 211 Portobello Street, Sheffield, S1 4DP, United Kingdom#TAB#"],"affiliations":[{"raw_affiliation_string":"University of Sheffield, Department of Computer Science, Regent Court, 211 Portobello Street, Sheffield S1 4DP, United Kingdom","institution_ids":["https://openalex.org/I91136226"]},{"raw_affiliation_string":"University of Sheffield, Department of Computer Science, Regent Court, 211 Portobello Street, Sheffield, S1 4DP, United Kingdom#TAB#","institution_ids":["https://openalex.org/I91136226"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034625397","display_name":"Neil Walkinshaw","orcid":"https://orcid.org/0000-0003-2134-6548"},"institutions":[{"id":"https://openalex.org/I91136226","display_name":"University of Sheffield","ror":"https://ror.org/05krs5044","country_code":"GB","type":"education","lineage":["https://openalex.org/I91136226"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Neil Walkinshaw","raw_affiliation_strings":["University of Sheffield, Department of Computer Science, Regent Court, 211 Portobello Street, Sheffield S1 4DP, United Kingdom","University of Sheffield, Department of Computer Science, Regent Court, 211 Portobello Street, Sheffield, S1 4DP, United Kingdom#TAB#"],"affiliations":[{"raw_affiliation_string":"University of Sheffield, Department of Computer Science, Regent Court, 211 Portobello Street, Sheffield S1 4DP, United Kingdom","institution_ids":["https://openalex.org/I91136226"]},{"raw_affiliation_string":"University of Sheffield, Department of Computer Science, Regent Court, 211 Portobello Street, Sheffield, S1 4DP, United Kingdom#TAB#","institution_ids":["https://openalex.org/I91136226"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078598020","display_name":"Phil McMinn","orcid":"https://orcid.org/0000-0001-9137-7433"},"institutions":[{"id":"https://openalex.org/I91136226","display_name":"University of Sheffield","ror":"https://ror.org/05krs5044","country_code":"GB","type":"education","lineage":["https://openalex.org/I91136226"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Phil McMinn","raw_affiliation_strings":["University of Sheffield, Department of Computer Science, Regent Court, 211 Portobello Street, Sheffield S1 4DP, United Kingdom","University of Sheffield, Department of Computer Science, Regent Court, 211 Portobello Street, Sheffield, S1 4DP, United Kingdom#TAB#"],"affiliations":[{"raw_affiliation_string":"University of Sheffield, Department of Computer Science, Regent Court, 211 Portobello Street, Sheffield S1 4DP, United Kingdom","institution_ids":["https://openalex.org/I91136226"]},{"raw_affiliation_string":"University of Sheffield, Department of Computer Science, Regent Court, 211 Portobello Street, Sheffield, S1 4DP, United Kingdom#TAB#","institution_ids":["https://openalex.org/I91136226"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5031576868","display_name":"Mike Holcombe","orcid":null},"institutions":[{"id":"https://openalex.org/I91136226","display_name":"University of Sheffield","ror":"https://ror.org/05krs5044","country_code":"GB","type":"education","lineage":["https://openalex.org/I91136226"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Mike Holcombe","raw_affiliation_strings":["University of Sheffield, Department of Computer Science, Regent Court, 211 Portobello Street, Sheffield S1 4DP, United Kingdom","University of Sheffield, Department of Computer Science, Regent Court, 211 Portobello Street, Sheffield, S1 4DP, United Kingdom#TAB#"],"affiliations":[{"raw_affiliation_string":"University of Sheffield, Department of Computer Science, Regent Court, 211 Portobello Street, Sheffield S1 4DP, United Kingdom","institution_ids":["https://openalex.org/I91136226"]},{"raw_affiliation_string":"University of Sheffield, Department of Computer Science, Regent Court, 211 Portobello Street, Sheffield, S1 4DP, United Kingdom#TAB#","institution_ids":["https://openalex.org/I91136226"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5111682179"],"corresponding_institution_ids":["https://openalex.org/I91136226"],"apc_list":{"value":2700,"currency":"USD","value_usd":2700},"apc_paid":null,"fwci":0.808,"has_fulltext":false,"cited_by_count":18,"citation_normalized_percentile":{"value":0.72263112,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"93","issue":"1-2","first_page":"141","last_page":"150"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9905999898910522,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9905999898910522,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9578999876976013,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9574000239372253,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7094779014587402},{"id":"https://openalex.org/keywords/systems-biology","display_name":"Systems biology","score":0.6437755823135376},{"id":"https://openalex.org/keywords/modelling-biological-systems","display_name":"Modelling biological systems","score":0.6123813986778259},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.589231014251709},{"id":"https://openalex.org/keywords/key","display_name":"Key (lock)","score":0.5774855613708496},{"id":"https://openalex.org/keywords/component","display_name":"Component (thermodynamics)","score":0.5095539093017578},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.48761501908302307},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.44612306356430054},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.35288575291633606},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.34832751750946045},{"id":"https://openalex.org/keywords/systems-engineering","display_name":"Systems engineering","score":0.34712833166122437},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.29015952348709106},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.20865675806999207},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.11383253335952759},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.08502909541130066}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7094779014587402},{"id":"https://openalex.org/C152662350","wikidata":"https://www.wikidata.org/wiki/Q815297","display_name":"Systems biology","level":2,"score":0.6437755823135376},{"id":"https://openalex.org/C137866125","wikidata":"https://www.wikidata.org/wiki/Q4299308","display_name":"Modelling biological systems","level":3,"score":0.6123813986778259},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.589231014251709},{"id":"https://openalex.org/C26517878","wikidata":"https://www.wikidata.org/wiki/Q228039","display_name":"Key (lock)","level":2,"score":0.5774855613708496},{"id":"https://openalex.org/C168167062","wikidata":"https://www.wikidata.org/wiki/Q1117970","display_name":"Component (thermodynamics)","level":2,"score":0.5095539093017578},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.48761501908302307},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.44612306356430054},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.35288575291633606},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.34832751750946045},{"id":"https://openalex.org/C201995342","wikidata":"https://www.wikidata.org/wiki/Q682496","display_name":"Systems engineering","level":1,"score":0.34712833166122437},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.29015952348709106},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.20865675806999207},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.11383253335952759},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.08502909541130066},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C97355855","wikidata":"https://www.wikidata.org/wiki/Q11473","display_name":"Thermodynamics","level":1,"score":0.0},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D002453","descriptor_name":"Cell Cycle","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002453","descriptor_name":"Cell Cycle","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002453","descriptor_name":"Cell Cycle","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002454","descriptor_name":"Cell Differentiation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002454","descriptor_name":"Cell Differentiation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002454","descriptor_name":"Cell Differentiation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002478","descriptor_name":"Cells, Cultured","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002478","descriptor_name":"Cells, Cultured","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002478","descriptor_name":"Cells, Cultured","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015603","descriptor_name":"Keratinocytes","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D015603","descriptor_name":"Keratinocytes","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D015603","descriptor_name":"Keratinocytes","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1016/j.biosystems.2008.03.010","is_oa":false,"landing_page_url":"https://doi.org/10.1016/j.biosystems.2008.03.010","pdf_url":null,"source":{"id":"https://openalex.org/S99347777","display_name":"Biosystems","issn_l":"0303-2647","issn":["0303-2647","1872-8324"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Biosystems","raw_type":"journal-article"},{"id":"pmid:18487010","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/18487010","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bio Systems","raw_type":null},{"id":"pmh:oai:lra.le.ac.uk:2381/13009","is_oa":false,"landing_page_url":"http://hdl.handle.net/2381/13009","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PubMed","raw_type":"Journal Article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320332167","display_name":"Directorate for Biological Sciences","ror":"https://ror.org/001xhss06"},{"id":"https://openalex.org/F4320334627","display_name":"Engineering and Physical Sciences Research Council","ror":"https://ror.org/0439y7842"},{"id":"https://openalex.org/F4320334632","display_name":"Science and Technology Facilities Council","ror":"https://ror.org/057g20z61"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":9,"referenced_works":["https://openalex.org/W1538137835","https://openalex.org/W1550007239","https://openalex.org/W1870880761","https://openalex.org/W2059685380","https://openalex.org/W2087278791","https://openalex.org/W2120889810","https://openalex.org/W2130071305","https://openalex.org/W2158427148","https://openalex.org/W3106729728"],"related_works":["https://openalex.org/W4386563820","https://openalex.org/W631732704","https://openalex.org/W2155261113","https://openalex.org/W2064988479","https://openalex.org/W1748979965","https://openalex.org/W3199870583","https://openalex.org/W4254550161","https://openalex.org/W1497779830","https://openalex.org/W2057769265","https://openalex.org/W1968058641"],"abstract_inverted_index":null,"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":2}],"updated_date":"2026-01-13T01:12:25.745995","created_date":"2025-10-10T00:00:00"}
