{"id":"https://openalex.org/W7117100959","doi":"https://doi.org/10.1016/j.asoc.2025.114526","title":"Multi-objective genetic algorithm with maximum-entropy classification and domain-specific evolutionary operators for microorganism selection on microbiomes","display_name":"Multi-objective genetic algorithm with maximum-entropy classification and domain-specific evolutionary operators for microorganism selection on microbiomes","publication_year":2025,"publication_date":"2025-12-24","ids":{"openalex":"https://openalex.org/W7117100959","doi":"https://doi.org/10.1016/j.asoc.2025.114526"},"language":"en","primary_location":{"id":"doi:10.1016/j.asoc.2025.114526","is_oa":true,"landing_page_url":"https://doi.org/10.1016/j.asoc.2025.114526","pdf_url":null,"source":{"id":"https://openalex.org/S140556538","display_name":"Applied Soft Computing","issn_l":"1568-4946","issn":["1568-4946","1872-9681"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Applied Soft Computing","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://doi.org/10.1016/j.asoc.2025.114526","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5093082663","display_name":"Fernando M. Rodr\u00edguez-Bejarano","orcid":null},"institutions":[{"id":"https://openalex.org/I80606768","display_name":"Universidad de Extremadura","ror":"https://ror.org/0174shg90","country_code":"ES","type":"education","lineage":["https://openalex.org/I80606768"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Fernando M. Rodr\u00edguez-Bejarano","raw_affiliation_strings":["Escuela Polit\u00e9cnica, Universidad de Extremadura, Campus Universitario s/n, 10003 C\u00e1ceres, Spain"],"affiliations":[{"raw_affiliation_string":"Escuela Polit\u00e9cnica, Universidad de Extremadura, Campus Universitario s/n, 10003 C\u00e1ceres, Spain","institution_ids":["https://openalex.org/I80606768"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044896136","display_name":"Sergio Santander\u2010Jim\u00e9nez","orcid":null},"institutions":[{"id":"https://openalex.org/I80606768","display_name":"Universidad de Extremadura","ror":"https://ror.org/0174shg90","country_code":"ES","type":"education","lineage":["https://openalex.org/I80606768"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Sergio Santander-Jim\u00e9nez","raw_affiliation_strings":["Escuela Polit\u00e9cnica, Universidad de Extremadura, Campus Universitario s/n, 10003 C\u00e1ceres, Spain"],"affiliations":[{"raw_affiliation_string":"Escuela Polit\u00e9cnica, Universidad de Extremadura, Campus Universitario s/n, 10003 C\u00e1ceres, Spain","institution_ids":["https://openalex.org/I80606768"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5044660593","display_name":"Vega-Rodriguez Miguel Angel","orcid":null},"institutions":[{"id":"https://openalex.org/I80606768","display_name":"Universidad de Extremadura","ror":"https://ror.org/0174shg90","country_code":"ES","type":"education","lineage":["https://openalex.org/I80606768"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Miguel A. Vega-Rodr\u00edguez","raw_affiliation_strings":["Escuela Polit\u00e9cnica, Universidad de Extremadura, Campus Universitario s/n, 10003 C\u00e1ceres, Spain"],"affiliations":[{"raw_affiliation_string":"Escuela Polit\u00e9cnica, Universidad de Extremadura, Campus Universitario s/n, 10003 C\u00e1ceres, Spain","institution_ids":["https://openalex.org/I80606768"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5044896136"],"corresponding_institution_ids":["https://openalex.org/I80606768"],"apc_list":{"value":3350,"currency":"USD","value_usd":3350},"apc_paid":{"value":3350,"currency":"USD","value_usd":3350},"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.62518013,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"189","issue":null,"first_page":"114526","last_page":"114526"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.2718999981880188,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.2718999981880188,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.2696000039577484,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10141","display_name":"Probiotics and Fermented Foods","score":0.08550000190734863,"subfield":{"id":"https://openalex.org/subfields/1106","display_name":"Food Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/microbiome","display_name":"Microbiome","score":0.7793999910354614},{"id":"https://openalex.org/keywords/selection","display_name":"Selection (genetic algorithm)","score":0.6270999908447266},{"id":"https://openalex.org/keywords/sorting","display_name":"Sorting","score":0.4925000071525574},{"id":"https://openalex.org/keywords/boosting","display_name":"Boosting (machine learning)","score":0.4742000102996826},{"id":"https://openalex.org/keywords/evolutionary-algorithm","display_name":"Evolutionary algorithm","score":0.4311000108718872},{"id":"https://openalex.org/keywords/field","display_name":"Field (mathematics)","score":0.35659998655319214},{"id":"https://openalex.org/keywords/genetic-algorithm","display_name":"Genetic algorithm","score":0.328900009393692}],"concepts":[{"id":"https://openalex.org/C143121216","wikidata":"https://www.wikidata.org/wiki/Q1330402","display_name":"Microbiome","level":2,"score":0.7793999910354614},{"id":"https://openalex.org/C81917197","wikidata":"https://www.wikidata.org/wiki/Q628760","display_name":"Selection (genetic algorithm)","level":2,"score":0.6270999908447266},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5957000255584717},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.503600001335144},{"id":"https://openalex.org/C111696304","wikidata":"https://www.wikidata.org/wiki/Q2303697","display_name":"Sorting","level":2,"score":0.4925000071525574},{"id":"https://openalex.org/C46686674","wikidata":"https://www.wikidata.org/wiki/Q466303","display_name":"Boosting (machine learning)","level":2,"score":0.4742000102996826},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.47110000252723694},{"id":"https://openalex.org/C159149176","wikidata":"https://www.wikidata.org/wiki/Q14489129","display_name":"Evolutionary algorithm","level":2,"score":0.4311000108718872},{"id":"https://openalex.org/C9652623","wikidata":"https://www.wikidata.org/wiki/Q190109","display_name":"Field (mathematics)","level":2,"score":0.35659998655319214},{"id":"https://openalex.org/C8880873","wikidata":"https://www.wikidata.org/wiki/Q187787","display_name":"Genetic algorithm","level":2,"score":0.328900009393692},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.32510000467300415},{"id":"https://openalex.org/C105902424","wikidata":"https://www.wikidata.org/wiki/Q1197129","display_name":"Evolutionary computation","level":2,"score":0.3109999895095825},{"id":"https://openalex.org/C158154518","wikidata":"https://www.wikidata.org/wiki/Q7310970","display_name":"Relevance (law)","level":2,"score":0.2921999990940094},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.2879999876022339},{"id":"https://openalex.org/C206688291","wikidata":"https://www.wikidata.org/wiki/Q7617819","display_name":"Stochastic gradient descent","level":3,"score":0.28700000047683716},{"id":"https://openalex.org/C151913843","wikidata":"https://www.wikidata.org/wiki/Q3454555","display_name":"Dominance (genetics)","level":3,"score":0.2809000015258789},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2703000009059906},{"id":"https://openalex.org/C15151743","wikidata":"https://www.wikidata.org/wiki/Q903778","display_name":"Metagenomics","level":3,"score":0.2669000029563904},{"id":"https://openalex.org/C148483581","wikidata":"https://www.wikidata.org/wiki/Q446488","display_name":"Feature selection","level":2,"score":0.2603999972343445}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1016/j.asoc.2025.114526","is_oa":true,"landing_page_url":"https://doi.org/10.1016/j.asoc.2025.114526","pdf_url":null,"source":{"id":"https://openalex.org/S140556538","display_name":"Applied Soft Computing","issn_l":"1568-4946","issn":["1568-4946","1872-9681"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Applied Soft Computing","raw_type":"journal-article"}],"best_oa_location":{"id":"doi:10.1016/j.asoc.2025.114526","is_oa":true,"landing_page_url":"https://doi.org/10.1016/j.asoc.2025.114526","pdf_url":null,"source":{"id":"https://openalex.org/S140556538","display_name":"Applied Soft Computing","issn_l":"1568-4946","issn":["1568-4946","1872-9681"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Applied Soft Computing","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G4071087094","display_name":null,"funder_award_id":"PID2022-137275NA-I00","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G4800919995","display_name":null,"funder_award_id":"IB20047","funder_id":"https://openalex.org/F4320328352","funder_display_name":"Junta de Extremadura"},{"id":"https://openalex.org/G7327160552","display_name":null,"funder_award_id":"GR24017","funder_id":"https://openalex.org/F4320328352","funder_display_name":"Junta de Extremadura"},{"id":"https://openalex.org/G8865911922","display_name":null,"funder_award_id":"MICIU/AEI/10.13039/501100011033","funder_id":"https://openalex.org/F4320315062","funder_display_name":"Ministerio de Ciencia, Innovaci\u00f3n y Universidades"}],"funders":[{"id":"https://openalex.org/F4320315062","display_name":"Ministerio de Ciencia, Innovaci\u00f3n y Universidades","ror":null},{"id":"https://openalex.org/F4320328352","display_name":"Junta de Extremadura","ror":"https://ror.org/01df4mv68"},{"id":"https://openalex.org/F4320335322","display_name":"European Regional Development Fund","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320335598","display_name":"Agencia Estatal de Investigaci\u00f3n","ror":null}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":54,"referenced_works":["https://openalex.org/W1964027278","https://openalex.org/W2011536028","https://openalex.org/W2013371150","https://openalex.org/W2022485595","https://openalex.org/W2024008934","https://openalex.org/W2024206313","https://openalex.org/W2038420231","https://openalex.org/W2107097628","https://openalex.org/W2126105956","https://openalex.org/W2143381319","https://openalex.org/W2154026962","https://openalex.org/W2158902491","https://openalex.org/W2173732482","https://openalex.org/W2334099820","https://openalex.org/W2467207265","https://openalex.org/W2559480110","https://openalex.org/W2606807087","https://openalex.org/W2618549481","https://openalex.org/W2769542288","https://openalex.org/W2844677341","https://openalex.org/W2913269082","https://openalex.org/W2942110779","https://openalex.org/W2943091811","https://openalex.org/W2953583829","https://openalex.org/W2954590327","https://openalex.org/W2963276645","https://openalex.org/W2964746016","https://openalex.org/W2976007626","https://openalex.org/W2987427618","https://openalex.org/W3001537280","https://openalex.org/W3008797568","https://openalex.org/W3009935434","https://openalex.org/W3018965516","https://openalex.org/W3021613070","https://openalex.org/W3104177220","https://openalex.org/W3133464755","https://openalex.org/W3200632558","https://openalex.org/W3214890446","https://openalex.org/W4207025204","https://openalex.org/W4212956995","https://openalex.org/W4220785839","https://openalex.org/W4224209549","https://openalex.org/W4281490401","https://openalex.org/W4282827877","https://openalex.org/W4283804538","https://openalex.org/W4296580963","https://openalex.org/W4311150530","https://openalex.org/W4322774587","https://openalex.org/W4324086593","https://openalex.org/W4378980254","https://openalex.org/W4385655466","https://openalex.org/W4386209329","https://openalex.org/W4392623301","https://openalex.org/W4408262072"],"related_works":[],"abstract_inverted_index":{"The":[0,125],"field":[1,26],"of":[2,22,32,43,48,52,113,127,144,171,178,200,228,235,260,281,286,290,294,298],"microbiome":[3,34,132,274],"research":[4],"has":[5],"experienced":[6],"exponential":[7],"growth":[8],"in":[9,15,24,28,137,161,284],"recent":[10],"years,":[11],"driven":[12],"by":[13,121,225],"advancements":[14],"next-generation":[16],"sequencing":[17],"technologies.":[18],"A":[19],"particular":[20],"topic":[21],"interest":[23],"this":[25,241],"lies":[27],"studying":[29],"the":[30,33,36,41,45,83,89,110,117,122,226,232,236,279,282,295,299],"influence":[31],"on":[35,74,79,82,129,256,271],"host":[37],"organism\u2019s":[38],"state,":[39],"with":[40,95,116,140,154,196],"aim":[42],"boosting":[44],"potential":[46],"use":[47],"microorganisms":[49],"as":[50],"indicators":[51],"phenotypic":[53],"conditions.":[54],"However,":[55],"microorganism":[56,254,265,301],"selection":[57,255],"is":[58,223],"a":[59,70,141,175],"hard-to-tackle":[60],"problem":[61],"involving":[62],"multiple":[63],"optimality":[64],"criteria.":[65],"This":[66,222],"work":[67,242],"introduces":[68],"MADMISM,":[69],"Multi-objective":[71],"Approach":[72],"based":[73],"Dominance":[75],"for":[76,218,240,253,263],"MIcroorganism":[77],"Selection":[78],"Microbiomes.":[80],"Based":[81],"Non-dominated":[84],"Sorting":[85],"Genetic":[86],"Algorithm":[87],"III,":[88],"proposed":[90],"approach":[91,217,252],"includes":[92],"maximum-entropy":[93],"classification":[94,152,176],"stochastic":[96],"gradient":[97],"descent":[98],"learning":[99],"and":[100,174,203,231,288],"domain-specific":[101,123,261],"operators":[102,262],"through":[103],"all":[104],"evolutionary":[105,114],"stages.":[106],"Hence,":[107],"MADMISM":[108,165,191,213],"combines":[109],"search":[111],"power":[112],"algorithms":[115],"enhanced":[118],"guidance":[119],"provided":[120],"operators.":[124],"evaluation":[126,270],"results":[128,230],"eight":[130,272],"real":[131,273],"datasets":[133],"showcases":[134],"MADMISM\u2019s":[135],"superiority":[136],"providing":[138],"solutions":[139],"minimal":[142],"set":[143],"Operational":[145],"Taxonomic":[146],"Units":[147],"(OTUs)":[148],"while":[149,185],"achieving":[150],"high":[151],"performance,":[153],"statistically":[155,205],"significant":[156,206],"improvements":[157,207],"over":[158,208,278],"state-of-the-art":[159,183],"methods":[160],"most":[162],"scenarios.":[163],"Specifically,":[164],"accomplishes":[166],"an":[167,197,215],"average":[168,198],"OTU":[169],"reduction":[170],"46.35":[172],"%":[173,180],"improvement":[177],"12.05":[179],"compared":[181],"to":[182],"methods,":[184],"also":[186],"showcasing":[187],"remarkable":[188],"scalability.":[189],"Furthermore,":[190],"exhibited":[192],"superior":[193],"multi-objective":[194,210,251],"performance":[195],"hypervolume":[199],"90.06":[201],"%,":[202],"presented":[204],"well-established":[209],"algorithms.":[211],"Therefore,":[212],"represents":[214],"effective":[216],"identifying":[219],"microbial":[220],"markers.":[221],"evidenced":[224],"quality":[227],"its":[229],"biological":[233,296],"relevance":[234,297],"selected":[237],"microorganisms.":[238],"Materials":[239],"can":[243],"be":[244],"found":[245],"at":[246],"https://github.com/frodbej/madmism":[247],".":[248],"\u2022":[249,258,267,276,292],"Novel":[250],"microbiomes.":[257],"Definition":[259],"accurate":[264],"selection.":[266],"In-depth":[268],"experimental":[269],"datasets.":[275],"Improvements":[277],"state":[280],"art":[283],"terms":[285],"AUC":[287],"number":[289],"OTUs.":[291],"Analysis":[293],"identified":[300],"sets.":[302]},"counts_by_year":[],"updated_date":"2026-04-09T08:11:56.329763","created_date":"2025-12-24T00:00:00"}
