{"id":"https://openalex.org/W7155164332","doi":"https://doi.org/10.1016/j.array.2026.100811","title":"KMLEE: A multimodal transformer for antimicrobial-peptide discovery","display_name":"KMLEE: A multimodal transformer for antimicrobial-peptide discovery","publication_year":2026,"publication_date":"2026-04-22","ids":{"openalex":"https://openalex.org/W7155164332","doi":"https://doi.org/10.1016/j.array.2026.100811"},"language":"en","primary_location":{"id":"doi:10.1016/j.array.2026.100811","is_oa":true,"landing_page_url":"https://doi.org/10.1016/j.array.2026.100811","pdf_url":null,"source":{"id":"https://openalex.org/S4210194039","display_name":"Array","issn_l":"2590-0056","issn":["2590-0056"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Array","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1016/j.array.2026.100811","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5049646227","display_name":"Kyoungmin Lee","orcid":"https://orcid.org/0000-0002-6578-7671"},"institutions":[{"id":"https://openalex.org/I193352282","display_name":"Daegu Gyeongbuk Institute of Science and Technology","ror":"https://ror.org/03frjya69","country_code":"KR","type":"education","lineage":["https://openalex.org/I193352282"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Kyoungmin Lee","raw_affiliation_strings":["Department of Brain Sciences, DGIST, Daegu, 42988, South Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Brain Sciences, DGIST, Daegu, 42988, South Korea","institution_ids":["https://openalex.org/I193352282"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045004906","display_name":"Mookyung Cheon","orcid":"https://orcid.org/0000-0001-6777-6725"},"institutions":[{"id":"https://openalex.org/I4210155455","display_name":"Korea Brain Research Institute","ror":"https://ror.org/055zd7d59","country_code":"KR","type":"facility","lineage":["https://openalex.org/I4210155455"]}],"countries":["KR"],"is_corresponding":true,"raw_author_name":"Mookyung Cheon","raw_affiliation_strings":["Dementia Research Group, Korean Brain Research Institute, Daegu, South Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dementia Research Group, Korean Brain Research Institute, Daegu, South Korea","institution_ids":["https://openalex.org/I4210155455"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5047055322","display_name":"Wookyung Yu","orcid":"https://orcid.org/0000-0001-9835-930X"},"institutions":[{"id":"https://openalex.org/I193352282","display_name":"Daegu Gyeongbuk Institute of Science and Technology","ror":"https://ror.org/03frjya69","country_code":"KR","type":"education","lineage":["https://openalex.org/I193352282"]}],"countries":["KR"],"is_corresponding":true,"raw_author_name":"Wookyung Yu","raw_affiliation_strings":["Center for Synapse Diversity and Specificity, DGIST, Daegu, 42988, South Korea","Core Protein Resources Center, DGIST, Daegu, 42988, South Korea","Department of Brain Sciences, DGIST, Daegu, 42988, South Korea"],"raw_orcid":"https://orcid.org/0000-0001-9835-930X","affiliations":[{"raw_affiliation_string":"Center for Synapse Diversity and Specificity, DGIST, Daegu, 42988, South Korea","institution_ids":["https://openalex.org/I193352282"]},{"raw_affiliation_string":"Core Protein Resources Center, DGIST, Daegu, 42988, South Korea","institution_ids":["https://openalex.org/I193352282"]},{"raw_affiliation_string":"Department of Brain Sciences, DGIST, Daegu, 42988, South Korea","institution_ids":["https://openalex.org/I193352282"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5045004906","https://openalex.org/A5047055322"],"corresponding_institution_ids":["https://openalex.org/I193352282","https://openalex.org/I4210155455"],"apc_list":{"value":1350,"currency":"USD","value_usd":1350},"apc_paid":{"value":1350,"currency":"USD","value_usd":1350},"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.89855475,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"30","issue":null,"first_page":"100811","last_page":"100811"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11103","display_name":"Antimicrobial Peptides and Activities","score":0.6111000180244446,"subfield":{"id":"https://openalex.org/subfields/2404","display_name":"Microbiology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11103","display_name":"Antimicrobial Peptides and Activities","score":0.6111000180244446,"subfield":{"id":"https://openalex.org/subfields/2404","display_name":"Microbiology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10252","display_name":"Microbial Natural Products and Biosynthesis","score":0.0851999968290329,"subfield":{"id":"https://openalex.org/subfields/2736","display_name":"Pharmacology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10620","display_name":"Protease and Inhibitor Mechanisms","score":0.02590000070631504,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/transformer","display_name":"Transformer","score":0.38580000400543213},{"id":"https://openalex.org/keywords/troubleshooting","display_name":"Troubleshooting","score":0.295199990272522},{"id":"https://openalex.org/keywords/automation","display_name":"Automation","score":0.21699999272823334},{"id":"https://openalex.org/keywords/interchangeability","display_name":"Interchangeability","score":0.20419999957084656}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5583000183105469},{"id":"https://openalex.org/C66322947","wikidata":"https://www.wikidata.org/wiki/Q11658","display_name":"Transformer","level":3,"score":0.38580000400543213},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.30880001187324524},{"id":"https://openalex.org/C147494362","wikidata":"https://www.wikidata.org/wiki/Q2078905","display_name":"Troubleshooting","level":2,"score":0.295199990272522},{"id":"https://openalex.org/C119599485","wikidata":"https://www.wikidata.org/wiki/Q43035","display_name":"Electrical engineering","level":1,"score":0.23240000009536743},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2223999947309494},{"id":"https://openalex.org/C115901376","wikidata":"https://www.wikidata.org/wiki/Q184199","display_name":"Automation","level":2,"score":0.21699999272823334},{"id":"https://openalex.org/C24326235","wikidata":"https://www.wikidata.org/wiki/Q126095","display_name":"Electronic engineering","level":1,"score":0.21220000088214874},{"id":"https://openalex.org/C2779606619","wikidata":"https://www.wikidata.org/wiki/Q17092524","display_name":"Interchangeability","level":2,"score":0.20419999957084656},{"id":"https://openalex.org/C26517878","wikidata":"https://www.wikidata.org/wiki/Q228039","display_name":"Key (lock)","level":2,"score":0.20329999923706055}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1016/j.array.2026.100811","is_oa":true,"landing_page_url":"https://doi.org/10.1016/j.array.2026.100811","pdf_url":null,"source":{"id":"https://openalex.org/S4210194039","display_name":"Array","issn_l":"2590-0056","issn":["2590-0056"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Array","raw_type":"journal-article"}],"best_oa_location":{"id":"doi:10.1016/j.array.2026.100811","is_oa":true,"landing_page_url":"https://doi.org/10.1016/j.array.2026.100811","pdf_url":null,"source":{"id":"https://openalex.org/S4210194039","display_name":"Array","issn_l":"2590-0056","issn":["2590-0056"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Array","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320322007","display_name":"Ministry of Environment","ror":"https://ror.org/04xmt0833"},{"id":"https://openalex.org/F4320322034","display_name":"Ministry of Health and Welfare","ror":"https://ror.org/00vxgjw72"},{"id":"https://openalex.org/F4320325358","display_name":"Animal and Plant Quarantine Agency","ror":"https://ror.org/04sbe6g90"},{"id":"https://openalex.org/F4320328359","display_name":"Ministry of Science and ICT, South Korea","ror":"https://ror.org/01wpjm123"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":48,"referenced_works":["https://openalex.org/W1709815505","https://openalex.org/W1975821399","https://openalex.org/W2055026825","https://openalex.org/W2066094805","https://openalex.org/W2096775086","https://openalex.org/W2097356092","https://openalex.org/W2107758049","https://openalex.org/W2108659901","https://openalex.org/W2113679889","https://openalex.org/W2117480021","https://openalex.org/W2131510173","https://openalex.org/W2143485490","https://openalex.org/W2156125289","https://openalex.org/W2159861471","https://openalex.org/W2163316049","https://openalex.org/W2175270296","https://openalex.org/W2337747100","https://openalex.org/W2791848964","https://openalex.org/W3012186427","https://openalex.org/W3043115370","https://openalex.org/W3097405028","https://openalex.org/W3117992890","https://openalex.org/W3165745490","https://openalex.org/W3188372451","https://openalex.org/W3215434929","https://openalex.org/W3216979156","https://openalex.org/W4206677002","https://openalex.org/W4214943162","https://openalex.org/W4226148785","https://openalex.org/W4281620288","https://openalex.org/W4293162929","https://openalex.org/W4310641985","https://openalex.org/W4327550249","https://openalex.org/W4377294718","https://openalex.org/W4379383636","https://openalex.org/W4392571650","https://openalex.org/W4402557213","https://openalex.org/W4402792719","https://openalex.org/W4403452738","https://openalex.org/W4403478976","https://openalex.org/W4403972269","https://openalex.org/W4404690629","https://openalex.org/W4405333215","https://openalex.org/W4406268612","https://openalex.org/W4407792319","https://openalex.org/W4408648728","https://openalex.org/W4409165224","https://openalex.org/W4409447416"],"related_works":[],"abstract_inverted_index":{"Multi-drug":[0],"resistance":[1],"is":[2],"accelerating,":[3],"sharpening":[4],"the":[5],"search":[6],"for":[7,81,110,124],"fresh":[8],"antimicrobial":[9,54],"scaffolds.":[10],"We":[11],"present":[12],"KMLEE":[13,97,118],"\u2014Knitted":[14],"Multi-modal":[15],"Layer":[16],"Efficient":[17],"Encoders\u2014an":[18],"interpretable":[19],"transformer":[20,49],"that":[21],"knits":[22],"together":[23],"primary":[24],"sequence,":[25,120],"dihedral":[26],"angles,":[27],"intrinsic":[28],"disorder":[29],"and":[30,42,114,122,130],"solvent":[31],"accessibility":[32],"to":[33,51],"build":[34],"holistic":[35,125],"peptide":[36,55,112],"representations.":[37],"Contact-map":[38],"positional":[39],"encoding,":[40],"PIPA-Norm":[41,129],"attention-guided":[43],"pooling":[44],"enable":[45],"an":[46,141],"integrated":[47],"multimodal":[48],"framework":[50],"outperform":[52],"state-of-the-art":[53],"(AMP)":[56],"predictors":[57],"(AUC":[58],"=":[59],"0.883)":[60],"within":[61],"a":[62,68,77,107,146,153],"single":[63,147],"network.":[64],"Attention":[65,150],"maps":[66,151],"expose":[67],"proline-centred":[69,154],"\u201cbend\u2013balance\u2013pack\u201d":[70],"motif":[71,94],"unseen":[72],"by":[73,93],"frequency":[74],"analysis,":[75],"suggesting":[76],"unifying":[78],"structural":[79],"blueprint":[80,156],"AMP":[82,89,126,160],"activity.":[83],"Screening":[84],"seven":[85,163],"metagenomes":[86,164],"uncovers":[87],"habitat-specific":[88,159],"signatures,":[90],"later":[91],"corroborated":[92],"enrichment":[95],"tests.":[96],"therefore":[98],"couples":[99],"high":[100],"predictive":[101],"power":[102],"with":[103],"mechanistic":[104],"insight,":[105],"offering":[106],"tractable":[108],"platform":[109],"rational":[111],"design":[113],"ecological":[115],"surveillance.":[116],"\u2022":[117,128,136,149,157],"integrates":[119],"structure":[121],"dynamics":[123],"prediction":[127],"Attention-Guided":[131],"Pooling":[132],"independently":[133],"boost":[134],"performance":[135],"Outperforms":[137],"existing":[138],"methods,":[139],"including":[140],"ensemble":[142],"model":[143],"while":[144],"using":[145],"network":[148],"reveal":[152],"\u2018bend-balance-pack\u2019":[155],"Identifies":[158],"signatures":[161],"across":[162]},"counts_by_year":[],"updated_date":"2026-04-29T09:16:38.111599","created_date":"2026-04-23T00:00:00"}
