{"id":"https://openalex.org/W2793740776","doi":"https://doi.org/10.1016/b978-0-12-809633-8.20496-2","title":"Two Decades of Biological Pathway Databases: Results and Challenges","display_name":"Two Decades of Biological Pathway Databases: Results and Challenges","publication_year":2018,"publication_date":"2018-03-15","ids":{"openalex":"https://openalex.org/W2793740776","doi":"https://doi.org/10.1016/b978-0-12-809633-8.20496-2","mag":"2793740776"},"language":"en","primary_location":{"id":"doi:10.1016/b978-0-12-809633-8.20496-2","is_oa":false,"landing_page_url":"https://doi.org/10.1016/b978-0-12-809633-8.20496-2","pdf_url":null,"source":{"id":"https://openalex.org/S4306463230","display_name":"Elsevier eBooks","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"ebook platform"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Encyclopedia of Bioinformatics and Computational Biology","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5088667484","display_name":"Sara Rahmati","orcid":"https://orcid.org/0000-0002-2009-4660"},"institutions":[{"id":"https://openalex.org/I4210131630","display_name":"Krembil Foundation","ror":"https://ror.org/037svw098","country_code":"CA","type":"nonprofit","lineage":["https://openalex.org/I4210131630"]},{"id":"https://openalex.org/I185261750","display_name":"University of Toronto","ror":"https://ror.org/03dbr7087","country_code":"CA","type":"education","lineage":["https://openalex.org/I185261750"]},{"id":"https://openalex.org/I4388446386","display_name":"Krembil Research Institute","ror":"https://ror.org/01f6jys10","country_code":null,"type":"facility","lineage":["https://openalex.org/I1325899441","https://openalex.org/I1325899441","https://openalex.org/I2799337515","https://openalex.org/I4388446386"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"Sara Rahmati","raw_affiliation_strings":["Krembil Research Institute, Toronto, ON, Canada","University of Toronto, Toronto, ON, Canada"],"affiliations":[{"raw_affiliation_string":"Krembil Research Institute, Toronto, ON, Canada","institution_ids":["https://openalex.org/I4388446386","https://openalex.org/I4210131630","https://openalex.org/I4388446386"]},{"raw_affiliation_string":"University of Toronto, Toronto, ON, Canada","institution_ids":["https://openalex.org/I185261750"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085732287","display_name":"Chiara Pastrello","orcid":"https://orcid.org/0000-0002-1934-7472"},"institutions":[{"id":"https://openalex.org/I4210131630","display_name":"Krembil Foundation","ror":"https://ror.org/037svw098","country_code":"CA","type":"nonprofit","lineage":["https://openalex.org/I4210131630"]},{"id":"https://openalex.org/I4388446386","display_name":"Krembil Research Institute","ror":"https://ror.org/01f6jys10","country_code":null,"type":"facility","lineage":["https://openalex.org/I1325899441","https://openalex.org/I1325899441","https://openalex.org/I2799337515","https://openalex.org/I4388446386"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Chiara Pastrello","raw_affiliation_strings":["Krembil Research Institute, Toronto, ON, Canada"],"affiliations":[{"raw_affiliation_string":"Krembil Research Institute, Toronto, ON, Canada","institution_ids":["https://openalex.org/I4388446386","https://openalex.org/I4210131630","https://openalex.org/I4388446386"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085970876","display_name":"Andrea E.M. Rossos","orcid":null},"institutions":[{"id":"https://openalex.org/I4388446386","display_name":"Krembil Research Institute","ror":"https://ror.org/01f6jys10","country_code":null,"type":"facility","lineage":["https://openalex.org/I1325899441","https://openalex.org/I1325899441","https://openalex.org/I2799337515","https://openalex.org/I4388446386"]},{"id":"https://openalex.org/I4210131630","display_name":"Krembil Foundation","ror":"https://ror.org/037svw098","country_code":"CA","type":"nonprofit","lineage":["https://openalex.org/I4210131630"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Andrea E.M. Rossos","raw_affiliation_strings":["Krembil Research Institute, Toronto, ON, Canada"],"affiliations":[{"raw_affiliation_string":"Krembil Research Institute, Toronto, ON, Canada","institution_ids":["https://openalex.org/I4388446386","https://openalex.org/I4210131630","https://openalex.org/I4388446386"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5055656807","display_name":"Igor Juri\u0161ica","orcid":"https://orcid.org/0000-0002-2507-946X"},"institutions":[{"id":"https://openalex.org/I207624831","display_name":"Slovak Academy of Sciences","ror":"https://ror.org/03h7qq074","country_code":"SK","type":"funder","lineage":["https://openalex.org/I207624831"]},{"id":"https://openalex.org/I185261750","display_name":"University of Toronto","ror":"https://ror.org/03dbr7087","country_code":"CA","type":"education","lineage":["https://openalex.org/I185261750"]}],"countries":["CA","SK"],"is_corresponding":false,"raw_author_name":"Igor Jurisica","raw_affiliation_strings":["Slovak Academy of Sciences, Bratislava, Slovakia","University of Toronto, ON, Canada"],"affiliations":[{"raw_affiliation_string":"Slovak Academy of Sciences, Bratislava, Slovakia","institution_ids":["https://openalex.org/I207624831"]},{"raw_affiliation_string":"University of Toronto, ON, Canada","institution_ids":["https://openalex.org/I185261750"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5088667484"],"corresponding_institution_ids":["https://openalex.org/I185261750","https://openalex.org/I4210131630","https://openalex.org/I4388446386"],"apc_list":null,"apc_paid":null,"fwci":1.5927,"has_fulltext":false,"cited_by_count":5,"citation_normalized_percentile":{"value":0.81556557,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":null,"issue":null,"first_page":"1071","last_page":"1084"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10252","display_name":"Microbial Natural Products and Biosynthesis","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/2736","display_name":"Pharmacology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9976999759674072,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.8017215728759766},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.673050045967102},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.6269536018371582},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.5431484580039978},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.5222159624099731},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.4965541958808899},{"id":"https://openalex.org/keywords/data-integration","display_name":"Data integration","score":0.4908474087715149},{"id":"https://openalex.org/keywords/biological-database","display_name":"Biological database","score":0.46318626403808594},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.39234116673469543},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.2547737956047058},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.19157791137695312},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.11164772510528564},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.10979336500167847}],"concepts":[{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.8017215728759766},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.673050045967102},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.6269536018371582},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.5431484580039978},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.5222159624099731},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.4965541958808899},{"id":"https://openalex.org/C72634772","wikidata":"https://www.wikidata.org/wiki/Q386824","display_name":"Data integration","level":2,"score":0.4908474087715149},{"id":"https://openalex.org/C20901353","wikidata":"https://www.wikidata.org/wiki/Q4117139","display_name":"Biological database","level":2,"score":0.46318626403808594},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.39234116673469543},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.2547737956047058},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.19157791137695312},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.11164772510528564},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.10979336500167847},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1016/b978-0-12-809633-8.20496-2","is_oa":false,"landing_page_url":"https://doi.org/10.1016/b978-0-12-809633-8.20496-2","pdf_url":null,"source":{"id":"https://openalex.org/S4306463230","display_name":"Elsevier eBooks","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"ebook platform"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Encyclopedia of Bioinformatics and Computational Biology","raw_type":"book-chapter"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9","score":0.49000000953674316}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":95,"referenced_works":["https://openalex.org/W13992469","https://openalex.org/W893557411","https://openalex.org/W1417332319","https://openalex.org/W1894267660","https://openalex.org/W1969325859","https://openalex.org/W1969709265","https://openalex.org/W1980578041","https://openalex.org/W1981620509","https://openalex.org/W1986365650","https://openalex.org/W1988517967","https://openalex.org/W1989277387","https://openalex.org/W1991105254","https://openalex.org/W1993702356","https://openalex.org/W1999758530","https://openalex.org/W2000285466","https://openalex.org/W2001903358","https://openalex.org/W2009696139","https://openalex.org/W2031218556","https://openalex.org/W2034102853","https://openalex.org/W2038264484","https://openalex.org/W2043274355","https://openalex.org/W2053159006","https://openalex.org/W2060797027","https://openalex.org/W2063028213","https://openalex.org/W2063280109","https://openalex.org/W2067290473","https://openalex.org/W2068419651","https://openalex.org/W2074477142","https://openalex.org/W2079048673","https://openalex.org/W2096766502","https://openalex.org/W2096951189","https://openalex.org/W2097498916","https://openalex.org/W2098407161","https://openalex.org/W2102899487","https://openalex.org/W2105325784","https://openalex.org/W2109607974","https://openalex.org/W2110256992","https://openalex.org/W2114843025","https://openalex.org/W2125984976","https://openalex.org/W2126997165","https://openalex.org/W2129592938","https://openalex.org/W2133579817","https://openalex.org/W2134394193","https://openalex.org/W2137304236","https://openalex.org/W2139254860","https://openalex.org/W2139550340","https://openalex.org/W2143969914","https://openalex.org/W2144983644","https://openalex.org/W2146111380","https://openalex.org/W2146653758","https://openalex.org/W2147585745","https://openalex.org/W2148866288","https://openalex.org/W2149705092","https://openalex.org/W2154037937","https://openalex.org/W2154947819","https://openalex.org/W2155330008","https://openalex.org/W2156716434","https://openalex.org/W2163841023","https://openalex.org/W2164298117","https://openalex.org/W2170637386","https://openalex.org/W2171599819","https://openalex.org/W2172022250","https://openalex.org/W2172045503","https://openalex.org/W2172102555","https://openalex.org/W2214074259","https://openalex.org/W2223549218","https://openalex.org/W2224812643","https://openalex.org/W2282345281","https://openalex.org/W2295275561","https://openalex.org/W2403934794","https://openalex.org/W2509717357","https://openalex.org/W2510799396","https://openalex.org/W2558585189","https://openalex.org/W2568642260","https://openalex.org/W2583580135","https://openalex.org/W2587669746","https://openalex.org/W2597175664","https://openalex.org/W2738632062","https://openalex.org/W2770983033","https://openalex.org/W2915667579","https://openalex.org/W4242404314","https://openalex.org/W4294216483","https://openalex.org/W6605722572","https://openalex.org/W6628230694","https://openalex.org/W6674567323","https://openalex.org/W6680606729","https://openalex.org/W6681100453","https://openalex.org/W6682944774","https://openalex.org/W6683925876","https://openalex.org/W6685128893","https://openalex.org/W6685252019","https://openalex.org/W6695377366","https://openalex.org/W6697153927","https://openalex.org/W6713249225","https://openalex.org/W6734605540"],"related_works":["https://openalex.org/W2295598435","https://openalex.org/W2169589518","https://openalex.org/W2739872940","https://openalex.org/W2086443788","https://openalex.org/W2307569040","https://openalex.org/W2171665518","https://openalex.org/W2541393756","https://openalex.org/W2060096282","https://openalex.org/W115596161","https://openalex.org/W1983206747"],"abstract_inverted_index":null,"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
