{"id":"https://openalex.org/W4210367916","doi":"https://doi.org/10.1007/s00453-022-00934-y","title":"Efficient Computation of Sequence Mappability","display_name":"Efficient Computation of Sequence Mappability","publication_year":2022,"publication_date":"2022-02-02","ids":{"openalex":"https://openalex.org/W4210367916","doi":"https://doi.org/10.1007/s00453-022-00934-y"},"language":"en","primary_location":{"id":"doi:10.1007/s00453-022-00934-y","is_oa":true,"landing_page_url":"https://doi.org/10.1007/s00453-022-00934-y","pdf_url":"https://link.springer.com/content/pdf/10.1007/s00453-022-00934-y.pdf","source":{"id":"https://openalex.org/S89324355","display_name":"Algorithmica","issn_l":"0178-4617","issn":["0178-4617","1432-0541"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Algorithmica","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://link.springer.com/content/pdf/10.1007/s00453-022-00934-y.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5019929803","display_name":"Panagiotis Charalampopoulos","orcid":"https://orcid.org/0000-0002-6024-1557"},"institutions":[{"id":"https://openalex.org/I138898306","display_name":"Reichman University","ror":"https://ror.org/01px5cv07","country_code":"IL","type":"education","lineage":["https://openalex.org/I138898306"]},{"id":"https://openalex.org/I4210093787","display_name":"Herzliya Medical Center","ror":"https://ror.org/00m6hsp80","country_code":"IL","type":"healthcare","lineage":["https://openalex.org/I4210093787"]}],"countries":["IL"],"is_corresponding":true,"raw_author_name":"Panagiotis Charalampopoulos","raw_affiliation_strings":["Reichman University, Herzliya, Israel","IDC - Interdisciplinary Center Herzliya (Kanfei Nesharim St, Hertsliya, 4610101, Isra\u00ebl - Isra\u00ebl)"],"affiliations":[{"raw_affiliation_string":"Reichman University, Herzliya, Israel","institution_ids":["https://openalex.org/I4210093787"]},{"raw_affiliation_string":"IDC - Interdisciplinary Center Herzliya (Kanfei Nesharim St, Hertsliya, 4610101, Isra\u00ebl - Isra\u00ebl)","institution_ids":["https://openalex.org/I138898306"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5107931257","display_name":"Costas S. Iliopoulos","orcid":null},"institutions":[{"id":"https://openalex.org/I183935753","display_name":"King's College London","ror":"https://ror.org/0220mzb33","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I183935753"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Costas S. Iliopoulos","raw_affiliation_strings":["Department of Informatics, King\u2019s College London, London, UK","Department of Informatics [King's College London] (Royaume-Uni)"],"affiliations":[{"raw_affiliation_string":"Department of Informatics, King\u2019s College London, London, UK","institution_ids":["https://openalex.org/I183935753"]},{"raw_affiliation_string":"Department of Informatics [King's College London] (Royaume-Uni)","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086467798","display_name":"Tomasz Kociumaka","orcid":"https://orcid.org/0000-0002-2477-1702"},"institutions":[{"id":"https://openalex.org/I95457486","display_name":"University of California, Berkeley","ror":"https://ror.org/01an7q238","country_code":"US","type":"education","lineage":["https://openalex.org/I95457486"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Tomasz Kociumaka","raw_affiliation_strings":["University of California, Berkeley, USA","UC Berkeley - University of California [Berkeley] (Berkeley, CA - \u00c9tats-Unis)"],"affiliations":[{"raw_affiliation_string":"University of California, Berkeley, USA","institution_ids":["https://openalex.org/I95457486"]},{"raw_affiliation_string":"UC Berkeley - University of California [Berkeley] (Berkeley, CA - \u00c9tats-Unis)","institution_ids":["https://openalex.org/I95457486"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051275317","display_name":"Solon P. Pissis","orcid":"https://orcid.org/0000-0002-1445-1932"},"institutions":[{"id":"https://openalex.org/I100532134","display_name":"Universit\u00e9 Claude Bernard Lyon 1","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I1341640284","display_name":"Centrum Wiskunde & Informatica","ror":"https://ror.org/00x7ekv49","country_code":"NL","type":"facility","lineage":["https://openalex.org/I1341640284","https://openalex.org/I2800991832","https://openalex.org/I4405262988"]},{"id":"https://openalex.org/I4210156470","display_name":"Vitenparken","ror":"https://ror.org/053pw6b94","country_code":"NO","type":"archive","lineage":["https://openalex.org/I4210156470"]},{"id":"https://openalex.org/I865915315","display_name":"Vrije Universiteit Amsterdam","ror":"https://ror.org/008xxew50","country_code":"NL","type":"education","lineage":["https://openalex.org/I865915315"]}],"countries":["FR","NL","NO"],"is_corresponding":false,"raw_author_name":"Solon P. Pissis","raw_affiliation_strings":["CWI, Amsterdam, The Netherlands","Vrije Universiteit, Amsterdam, The Netherlands","ERABLE - Equipe de recherche europ\u00e9enne en algorithmique et biologie formelle et exp\u00e9rimentale (Universit\u00e9 Claude Bernard (Lyon 1), Campus DOUA 43, Boulevard du 11 Novembre 1918 69622 Villeurbanne cedex - France)","CWI - Centrum Wiskunde & Informatica (Science Park 123, 1098 XG Amsterdam - Pays-Bas)","VU - Vrije Universiteit Amsterdam [Amsterdam] (De Boelelaan 1105 1081 HV Amsterdam - Pays-Bas)"],"affiliations":[{"raw_affiliation_string":"CWI, Amsterdam, The Netherlands","institution_ids":["https://openalex.org/I1341640284"]},{"raw_affiliation_string":"Vrije Universiteit, Amsterdam, The Netherlands","institution_ids":["https://openalex.org/I865915315"]},{"raw_affiliation_string":"ERABLE - Equipe de recherche europ\u00e9enne en algorithmique et biologie formelle et exp\u00e9rimentale (Universit\u00e9 Claude Bernard (Lyon 1), Campus DOUA 43, Boulevard du 11 Novembre 1918 69622 Villeurbanne cedex - France)","institution_ids":["https://openalex.org/I100532134"]},{"raw_affiliation_string":"CWI - Centrum Wiskunde & Informatica (Science Park 123, 1098 XG Amsterdam - Pays-Bas)","institution_ids":["https://openalex.org/I1341640284","https://openalex.org/I4210156470"]},{"raw_affiliation_string":"VU - Vrije Universiteit Amsterdam [Amsterdam] (De Boelelaan 1105 1081 HV Amsterdam - Pays-Bas)","institution_ids":["https://openalex.org/I865915315"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082711976","display_name":"Jakub Radoszewski","orcid":"https://orcid.org/0000-0002-0067-6401"},"institutions":[{"id":"https://openalex.org/I4210152232","display_name":"Institute of Informatics of the Slovak Academy of Sciences","ror":"https://ror.org/04jgqpc26","country_code":"SK","type":"facility","lineage":["https://openalex.org/I207624831","https://openalex.org/I4210152232"]},{"id":"https://openalex.org/I4654613","display_name":"University of Warsaw","ror":"https://ror.org/039bjqg32","country_code":"PL","type":"education","lineage":["https://openalex.org/I4654613"]}],"countries":["PL","SK"],"is_corresponding":false,"raw_author_name":"Jakub Radoszewski","raw_affiliation_strings":["Institute of Informatics, University of Warsaw, Warsaw, Poland","Institute of Informatics [Warsaw] (Pologne)"],"affiliations":[{"raw_affiliation_string":"Institute of Informatics, University of Warsaw, Warsaw, Poland","institution_ids":["https://openalex.org/I4654613"]},{"raw_affiliation_string":"Institute of Informatics [Warsaw] (Pologne)","institution_ids":["https://openalex.org/I4210152232"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5090363120","display_name":"Juliusz Straszy\u0144ski","orcid":"https://orcid.org/0000-0003-2207-0053"},"institutions":[{"id":"https://openalex.org/I4210152232","display_name":"Institute of Informatics of the Slovak Academy of Sciences","ror":"https://ror.org/04jgqpc26","country_code":"SK","type":"facility","lineage":["https://openalex.org/I207624831","https://openalex.org/I4210152232"]},{"id":"https://openalex.org/I4654613","display_name":"University of Warsaw","ror":"https://ror.org/039bjqg32","country_code":"PL","type":"education","lineage":["https://openalex.org/I4654613"]}],"countries":["PL","SK"],"is_corresponding":false,"raw_author_name":"Juliusz Straszy\u0144ski","raw_affiliation_strings":["Institute of Informatics, University of Warsaw, Warsaw, Poland","Institute of Informatics [Warsaw] (Pologne)"],"affiliations":[{"raw_affiliation_string":"Institute of Informatics, University of Warsaw, Warsaw, Poland","institution_ids":["https://openalex.org/I4654613"]},{"raw_affiliation_string":"Institute of Informatics [Warsaw] (Pologne)","institution_ids":["https://openalex.org/I4210152232"]}]}],"institutions":[],"countries_distinct_count":8,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5019929803"],"corresponding_institution_ids":["https://openalex.org/I138898306","https://openalex.org/I4210093787"],"apc_list":{"value":2290,"currency":"EUR","value_usd":2890},"apc_paid":{"value":2290,"currency":"EUR","value_usd":2890},"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.01038531,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"84","issue":"5","first_page":"1418","last_page":"1440"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13664","display_name":"Genome Rearrangement Algorithms","score":0.9872000217437744,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9717000126838684,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.6569572687149048},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4174477458000183},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.32441452145576477}],"concepts":[{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.6569572687149048},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4174477458000183},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.32441452145576477}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.1007/s00453-022-00934-y","is_oa":true,"landing_page_url":"https://doi.org/10.1007/s00453-022-00934-y","pdf_url":"https://link.springer.com/content/pdf/10.1007/s00453-022-00934-y.pdf","source":{"id":"https://openalex.org/S89324355","display_name":"Algorithmica","issn_l":"0178-4617","issn":["0178-4617","1432-0541"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Algorithmica","raw_type":"journal-article"},{"id":"pmh:oai:research.vu.nl:publications/d3a6542c-c2bb-452c-9289-e96a11494486","is_oa":true,"landing_page_url":"https://research.vu.nl/en/publications/d3a6542c-c2bb-452c-9289-e96a11494486","pdf_url":null,"source":{"id":"https://openalex.org/S4306401107","display_name":"VU Research Portal","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I865915315","host_organization_name":"Vrije Universiteit Amsterdam","host_organization_lineage":["https://openalex.org/I865915315"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Charalampopoulos, P, Iliopoulos, C S, Kociumaka, T, Pissis, S P, Radoszewski, J & Straszy\u0144ski, J 2022, 'Efficient Computation of Sequence Mappability', Algorithmica, vol. 84, no. 5, pp. 1418-1440. https://doi.org/10.1007/s00453-022-00934-y","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:cwi:oai:cwi.nl:31544","is_oa":true,"landing_page_url":"https://ir.cwi.nl/pub/31544","pdf_url":null,"source":{"id":"https://openalex.org/S4306401843","display_name":"Data Archiving and Networked Services (DANS)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1322597698","host_organization_name":"Royal Netherlands Academy of Arts and Sciences","host_organization_lineage":["https://openalex.org/I1322597698"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Algorithmica, 84, 1418 - 1440","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:HAL:hal-03832866v1","is_oa":true,"landing_page_url":"https://inria.hal.science/hal-03832866","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Algorithmica, 2022, 84 (5), pp.1418-1440. &#x27E8;10.1007/s00453-022-00934-y&#x27E9;","raw_type":"Journal articles"},{"id":"pmh:oai:research.vu.nl:openaire_cris_publications/d3a6542c-c2bb-452c-9289-e96a11494486","is_oa":true,"landing_page_url":"https://hdl.handle.net/1871.1/d3a6542c-c2bb-452c-9289-e96a11494486","pdf_url":null,"source":{"id":"https://openalex.org/S4306401107","display_name":"VU Research Portal","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I865915315","host_organization_name":"Vrije Universiteit Amsterdam","host_organization_lineage":["https://openalex.org/I865915315"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Charalampopoulos, P, Iliopoulos, C S, Kociumaka, T, Pissis, S P, Radoszewski, J & Straszy\u0144ski, J 2022, 'Efficient Computation of Sequence Mappability', Algorithmica, vol. 84, no. 5, pp. 1418-1440. https://doi.org/10.1007/s00453-022-00934-y","raw_type":"info:eu-repo/semantics/publishedVersion"}],"best_oa_location":{"id":"doi:10.1007/s00453-022-00934-y","is_oa":true,"landing_page_url":"https://doi.org/10.1007/s00453-022-00934-y","pdf_url":"https://link.springer.com/content/pdf/10.1007/s00453-022-00934-y.pdf","source":{"id":"https://openalex.org/S89324355","display_name":"Algorithmica","issn_l":"0178-4617","issn":["0178-4617","1432-0541"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Algorithmica","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1746348142","display_name":null,"funder_award_id":"POIR.04.04.00-00-24BA/16","funder_id":"https://openalex.org/F4320335322","funder_display_name":"European Regional Development Fund"},{"id":"https://openalex.org/G1789083108","display_name":null,"funder_award_id":"POIR.04.04.00-00-24BA/16","funder_id":"https://openalex.org/F4320321042","funder_display_name":"Fundacja na rzecz Nauki Polskiej"},{"id":"https://openalex.org/G1974542962","display_name":null,"funder_award_id":"Sk\u0142odowska","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G2689612763","display_name":null,"funder_award_id":"Marie","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G3109196640","display_name":null,"funder_award_id":"1934846","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G3200178448","display_name":"Innovative Molecular Diagnostics point-of-care device for MRSA","funder_award_id":"652303","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G3359927229","display_name":null,"funder_award_id":"956229","funder_id":"https://openalex.org/F4320335254","funder_display_name":"Horizon 2020"},{"id":"https://openalex.org/G3385483125","display_name":null,"funder_award_id":"1909046","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G3875748329","display_name":null,"funder_award_id":"European Regional Development Fund","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G4956428346","display_name":null,"funder_award_id":"Horizon 2020 research and innovatio","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G5036817778","display_name":null,"funder_award_id":"European Union's Horizon 2020 research and innov","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G5533802600","display_name":null,"funder_award_id":"2018/31/D/ST6/03991","funder_id":"https://openalex.org/F4320322511","funder_display_name":"Narodowe Centrum Nauki"},{"id":"https://openalex.org/G5651094140","display_name":null,"funder_award_id":"872539","funder_id":"https://openalex.org/F4320335254","funder_display_name":"Horizon 2020"},{"id":"https://openalex.org/G6203420807","display_name":null,"funder_award_id":"TRIPODS","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G665357574","display_name":null,"funder_award_id":"1652303","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G6660225447","display_name":null,"funder_award_id":"co-financed","funder_id":"https://openalex.org/F4320335322","funder_display_name":"European Regional Development Fund"},{"id":"https://openalex.org/G6697205189","display_name":null,"funder_award_id":"872539","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G6894402473","display_name":null,"funder_award_id":"Fellowship","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G7315415636","display_name":null,"funder_award_id":"Grant","funder_id":"https://openalex.org/F4320322252","funder_display_name":"Israel Science Foundation"},{"id":"https://openalex.org/G7440903218","display_name":null,"funder_award_id":"956229","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G8051717526","display_name":null,"funder_award_id":"Grant","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G8295719675","display_name":null,"funder_award_id":"592/17","funder_id":"https://openalex.org/F4320322252","funder_display_name":"Israel Science Foundation"},{"id":"https://openalex.org/G8318064016","display_name":null,"funder_award_id":"Horizon","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G848032724","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G8538941428","display_name":null,"funder_award_id":"Regional Development Fund","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G8545607667","display_name":null,"funder_award_id":"HDR TRIPODS 1934846","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G8633428685","display_name":null,"funder_award_id":"European Union's Horizon 2020 research and innovat","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320306151","display_name":"Alfred P. Sloan Foundation","ror":"https://ror.org/052csg198"},{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320321042","display_name":"Fundacja na rzecz Nauki Polskiej","ror":"https://ror.org/048zd9m77"},{"id":"https://openalex.org/F4320322252","display_name":"Israel Science Foundation","ror":"https://ror.org/04sazxf24"},{"id":"https://openalex.org/F4320322511","display_name":"Narodowe Centrum Nauki","ror":"https://ror.org/03ha2q922"},{"id":"https://openalex.org/F4320335254","display_name":"Horizon 2020","ror":null},{"id":"https://openalex.org/F4320335322","display_name":"European Regional Development Fund","ror":"https://ror.org/00k4n6c32"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4210367916.pdf","grobid_xml":"https://content.openalex.org/works/W4210367916.grobid-xml"},"referenced_works_count":36,"referenced_works":["https://openalex.org/W1489909987","https://openalex.org/W1781587470","https://openalex.org/W1963838724","https://openalex.org/W1965815538","https://openalex.org/W1972418517","https://openalex.org/W1985572324","https://openalex.org/W1995725694","https://openalex.org/W1996780636","https://openalex.org/W1999417916","https://openalex.org/W2018742603","https://openalex.org/W2024147613","https://openalex.org/W2067974452","https://openalex.org/W2085218027","https://openalex.org/W2158874082","https://openalex.org/W2165293958","https://openalex.org/W2336925273","https://openalex.org/W2340526756","https://openalex.org/W2397118291","https://openalex.org/W2776892647","https://openalex.org/W2789665539","https://openalex.org/W2794525315","https://openalex.org/W2885600862","https://openalex.org/W2901938264","https://openalex.org/W2911702276","https://openalex.org/W2917954097","https://openalex.org/W2946636261","https://openalex.org/W2962720177","https://openalex.org/W2964057579","https://openalex.org/W3014502522","https://openalex.org/W3034390492","https://openalex.org/W3104679409","https://openalex.org/W3155786344","https://openalex.org/W3170281024","https://openalex.org/W4212954813","https://openalex.org/W4302591804","https://openalex.org/W6966599392"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2051487156","https://openalex.org/W2073681303","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W2382290278","https://openalex.org/W2350741829","https://openalex.org/W2530322880"],"abstract_inverted_index":{"Abstract":[0],"Sequence":[1],"mappability":[2],"is":[3,29,38,118,352],"an":[4,119,353],"important":[5],"task":[6],"in":[7,137,153,340],"genome":[8],"resequencing.":[9],"In":[10],"the":[11,27,39,56,86,90,109,113,193,219,330,345],"(":[12,252,331],"k":[13,71,194,253,284,332],",":[14,26,135,254,329,333],"m":[15,58,255,261,334],")-mappability":[16,256,335],"problem,":[17],"for":[18,108,122,258,309],"a":[19,32,82,189,259,282,359],"given":[20],"sequence":[21],"T":[22,61],"of":[23,41,60,85,92,112,192,197,207,209,358],"length":[24],"n":[25],"goal":[28],"to":[30,203,217,249],"compute":[31,250],"table":[33],"whose":[34],"i":[35,65],"th":[36],"entry":[37],"number":[40],"indices":[42],"$$j":[43],"\\ne":[44],"i$$":[45],"<mml:math":[46,94,124,139,160,235,267,290,315],"xmlns:mml=\"http://www.w3.org/1998/Math/MathML\">":[47,95,125,140,161,236,268,291,316],"<mml:mrow>":[48,96,126,141,162,168,237,269,292,317],"<mml:mi>j</mml:mi>":[49],"<mml:mo>\u2260</mml:mo>":[50],"<mml:mi>i</mml:mi>":[51],"</mml:mrow>":[52,100,133,146,181,183,245,279,302,327],"</mml:math>":[53,101,134,147,184,246,280,303,328],"such":[54],"that":[55],"length-":[57],"substrings":[59],"starting":[62],"at":[63,69,362],"positions":[64],"and":[66,262,285,355],"j":[67],"have":[68],"most":[70],"mismatches.":[72],"Previous":[73],"works":[74,136],"on":[75,79,89],"this":[76],"problem":[77,223,336],"focused":[78],"heuristics":[80],"computing":[81],"rough":[83],"approximation":[84],"result":[87,117],"or":[88,281],"case":[91,111],"$$k=1$$":[93],"<mml:mi>k</mml:mi>":[97,127,172,177,270,296,318],"<mml:mo>=</mml:mo>":[98,128,321],"<mml:mn>1</mml:mn>":[99,131],".":[102,304],"We":[103,231],"present":[104],"several":[105],"efficient":[106],"algorithms":[107,248],"general":[110],"problem.":[114],"Our":[115,186,211],"main":[116],"algorithm":[120,187],"that,":[121,308],"$$k=O(1)$$":[123],"<mml:mi>O</mml:mi>":[129,142,163,238],"<mml:mo>(</mml:mo>":[130,143,164,239,323],"<mml:mo>)</mml:mo>":[132,145,182,244,326],"$$O(n)$$":[138],"<mml:mi>n</mml:mi>":[144,165,179,241,300,325],"space":[148],"and,":[149],"with":[150],"high":[151],"probability,":[152],"$$O(n":[154],"\\cdot":[155],"\\min":[156],"\\{m^k,\\log":[157],"^k":[158],"n\\})$$":[159],"<mml:mo>\u00b7</mml:mo>":[166],"<mml:mo>min</mml:mo>":[167],"<mml:mo>{</mml:mo>":[169,272,295],"<mml:msup>":[170,175,240],"<mml:mi>m</mml:mi>":[171,277,293,320],"</mml:msup>":[173,178,243],"<mml:mo>,</mml:mo>":[174,274,276,297,299,319],"<mml:mo>log</mml:mo>":[176,324],"<mml:mo>}</mml:mo>":[180,278,301],"time.":[185],"requires":[188],"careful":[190],"adaptation":[191],"-errata":[195],"trees":[196],"Cole":[198],"et":[199,227],"al.":[200,228],"[STOC":[201],"2004]":[202],"avoid":[204],"multiple":[205],"counting":[206],"pairs":[208],"substrings.":[210],"technique":[212],"can":[213],"also":[214],"be":[215,338],"applied":[216],"solve":[218],"all-pairs":[220],"Hamming":[221],"distance":[222],"introduced":[224],"by":[225],"Crochemore":[226],"[WABI":[229],"2017].":[230],"further":[232],"develop":[233],"$$O(n^2)$$":[234],"<mml:mn>2</mml:mn>":[242],"-time":[247],"all":[251,263,286],"tables":[257],"fixed":[260,283],"$$k\\in":[264],"\\{0,\\ldots":[265],",m\\}$$":[266],"<mml:mo>\u2208</mml:mo>":[271,294],"<mml:mn>0</mml:mn>":[273],"<mml:mo>\u2026</mml:mo>":[275,298],"$$m\\in":[287],"\\{k,\\ldots":[288],",n\\}$$":[289],"Finally,":[305],"we":[306],"show":[307],"$$k,m":[310],"=":[311],"\\Theta":[312],"(\\log":[313],"n)$$":[314],"<mml:mi>\u0398</mml:mi>":[322],"cannot":[337],"solved":[339],"strongly":[341],"subquadratic":[342],"time":[343],"unless":[344],"Strong":[346],"Exponential":[347],"Time":[348],"Hypothesis":[349],"fails.":[350],"This":[351],"improved":[354],"extended":[356],"version":[357],"paper":[360],"presented":[361],"SPIRE":[363],"2018.":[364]},"counts_by_year":[],"updated_date":"2026-04-13T07:58:08.660418","created_date":"2025-10-10T00:00:00"}