{"id":"https://openalex.org/W2089092392","doi":"https://doi.org/10.1007/s00453-007-9128-0","title":"Speeding Up HMM Decoding and Training by Exploiting Sequence Repetitions","display_name":"Speeding Up HMM Decoding and Training by Exploiting Sequence Repetitions","publication_year":2007,"publication_date":"2007-11-27","ids":{"openalex":"https://openalex.org/W2089092392","doi":"https://doi.org/10.1007/s00453-007-9128-0","mag":"2089092392"},"language":"en","primary_location":{"id":"doi:10.1007/s00453-007-9128-0","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s00453-007-9128-0","pdf_url":null,"source":{"id":"https://openalex.org/S89324355","display_name":"Algorithmica","issn_l":"0178-4617","issn":["0178-4617","1432-0541"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Algorithmica","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5010475007","display_name":"Yury Lifshits","orcid":null},"institutions":[{"id":"https://openalex.org/I122411786","display_name":"California Institute of Technology","ror":"https://ror.org/05dxps055","country_code":"US","type":"education","lineage":["https://openalex.org/I122411786"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Yury Lifshits","raw_affiliation_strings":["California Institute of Technology, 1200 E. California Blvd., Pasadena, CA, 91125, USA","California Institute of Technology, 1200 E. California Blvd, 91125, Pasadena, CA, USA"],"affiliations":[{"raw_affiliation_string":"California Institute of Technology, 1200 E. California Blvd., Pasadena, CA, 91125, USA","institution_ids":["https://openalex.org/I122411786"]},{"raw_affiliation_string":"California Institute of Technology, 1200 E. California Blvd, 91125, Pasadena, CA, USA","institution_ids":["https://openalex.org/I122411786"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002336559","display_name":"Shay Mozes","orcid":"https://orcid.org/0000-0001-9262-1821"},"institutions":[{"id":"https://openalex.org/I27804330","display_name":"Brown University","ror":"https://ror.org/05gq02987","country_code":"US","type":"education","lineage":["https://openalex.org/I27804330"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Shay Mozes","raw_affiliation_strings":["Department of Computer Science, Brown University, Providence, RI, 02912-1910, USA","Brown University, Department of Computer Science, 02912-1910, Providence, RI, USA#TAB#"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Brown University, Providence, RI, 02912-1910, USA","institution_ids":["https://openalex.org/I27804330"]},{"raw_affiliation_string":"Brown University, Department of Computer Science, 02912-1910, Providence, RI, USA#TAB#","institution_ids":["https://openalex.org/I27804330"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000569191","display_name":"Oren Weimann","orcid":"https://orcid.org/0000-0002-4510-7552"},"institutions":[{"id":"https://openalex.org/I126820664","display_name":"Vassar College","ror":"https://ror.org/022x6qg61","country_code":"US","type":"education","lineage":["https://openalex.org/I126820664"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Oren Weimann","raw_affiliation_strings":["MIT Computer Science and Artificial Intelligence Laboratory, 32 Vassar Street, Cambridge, MA, 02139, USA","MIT Computer Science and Artificial Intelligence Laboratory, 32 Vassar Street, 02139, Cambridge, MA, USA#TAB#"],"affiliations":[{"raw_affiliation_string":"MIT Computer Science and Artificial Intelligence Laboratory, 32 Vassar Street, Cambridge, MA, 02139, USA","institution_ids":["https://openalex.org/I126820664"]},{"raw_affiliation_string":"MIT Computer Science and Artificial Intelligence Laboratory, 32 Vassar Street, 02139, Cambridge, MA, USA#TAB#","institution_ids":["https://openalex.org/I126820664"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5048383219","display_name":"Michal Ziv-Ukelson","orcid":null},"institutions":[{"id":"https://openalex.org/I124227911","display_name":"Ben-Gurion University of the Negev","ror":"https://ror.org/05tkyf982","country_code":"IL","type":"education","lineage":["https://openalex.org/I124227911"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Michal Ziv-Ukelson","raw_affiliation_strings":["Computer Science Department, Ben Gurion University of the Negev, Beer-Sheva, 84105, Israel","Ben Gurion University of the Negev, Computer Science Department, 84105, Beer-Sheva, Israel#TAB#"],"affiliations":[{"raw_affiliation_string":"Computer Science Department, Ben Gurion University of the Negev, Beer-Sheva, 84105, Israel","institution_ids":["https://openalex.org/I124227911"]},{"raw_affiliation_string":"Ben Gurion University of the Negev, Computer Science Department, 84105, Beer-Sheva, Israel#TAB#","institution_ids":["https://openalex.org/I124227911"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5010475007"],"corresponding_institution_ids":["https://openalex.org/I122411786"],"apc_list":{"value":2290,"currency":"EUR","value_usd":2890},"apc_paid":null,"fwci":5.32,"has_fulltext":false,"cited_by_count":44,"citation_normalized_percentile":{"value":0.95430477,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"54","issue":"3","first_page":"379","last_page":"399"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10601","display_name":"Handwritten Text Recognition Techniques","score":0.9945999979972839,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10181","display_name":"Natural Language Processing Techniques","score":0.9914000034332275,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/hidden-markov-model","display_name":"Hidden Markov model","score":0.7327041029930115},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.6414602994918823},{"id":"https://openalex.org/keywords/decoding-methods","display_name":"Decoding methods","score":0.5970894694328308},{"id":"https://openalex.org/keywords/speech-recognition","display_name":"Speech recognition","score":0.579146146774292},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5783233046531677},{"id":"https://openalex.org/keywords/training","display_name":"Training (meteorology)","score":0.5686184167861938},{"id":"https://openalex.org/keywords/theory-of-computation","display_name":"Theory of computation","score":0.5480743050575256},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.369455486536026},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.2981773614883423},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.09259548783302307},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.08883580565452576},{"id":"https://openalex.org/keywords/geography","display_name":"Geography","score":0.07115927338600159}],"concepts":[{"id":"https://openalex.org/C23224414","wikidata":"https://www.wikidata.org/wiki/Q176769","display_name":"Hidden Markov model","level":2,"score":0.7327041029930115},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.6414602994918823},{"id":"https://openalex.org/C57273362","wikidata":"https://www.wikidata.org/wiki/Q576722","display_name":"Decoding methods","level":2,"score":0.5970894694328308},{"id":"https://openalex.org/C28490314","wikidata":"https://www.wikidata.org/wiki/Q189436","display_name":"Speech recognition","level":1,"score":0.579146146774292},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5783233046531677},{"id":"https://openalex.org/C2777211547","wikidata":"https://www.wikidata.org/wiki/Q17141490","display_name":"Training (meteorology)","level":2,"score":0.5686184167861938},{"id":"https://openalex.org/C24858836","wikidata":"https://www.wikidata.org/wiki/Q844718","display_name":"Theory of computation","level":2,"score":0.5480743050575256},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.369455486536026},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.2981773614883423},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.09259548783302307},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.08883580565452576},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.07115927338600159},{"id":"https://openalex.org/C153294291","wikidata":"https://www.wikidata.org/wiki/Q25261","display_name":"Meteorology","level":1,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1007/s00453-007-9128-0","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s00453-007-9128-0","pdf_url":null,"source":{"id":"https://openalex.org/S89324355","display_name":"Algorithmica","issn_l":"0178-4617","issn":["0178-4617","1432-0541"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Algorithmica","raw_type":"journal-article"},{"id":"pmh:oai:authors.library.caltech.edu:14757","is_oa":false,"landing_page_url":"https://resolver.caltech.edu/CaltechAUTHORS:20090731-105215144","pdf_url":null,"source":{"id":"https://openalex.org/S4306402161","display_name":"CaltechAUTHORS (California Institute of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I122411786","host_organization_name":"California Institute of Technology","host_organization_lineage":["https://openalex.org/I122411786"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.101.7100","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.101.7100","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://yury.name/papers/lifshits2007speeding.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.148.9996","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.148.9996","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.cs.brown.edu/~shay/Journalviterbi.pdf","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":40,"referenced_works":["https://openalex.org/W46679369","https://openalex.org/W1480106357","https://openalex.org/W1486245824","https://openalex.org/W1499594845","https://openalex.org/W1553326575","https://openalex.org/W1575431606","https://openalex.org/W1810603836","https://openalex.org/W1968063294","https://openalex.org/W1968328322","https://openalex.org/W1973608346","https://openalex.org/W1979740015","https://openalex.org/W1988171432","https://openalex.org/W1991133427","https://openalex.org/W1992396120","https://openalex.org/W2000528559","https://openalex.org/W2003841475","https://openalex.org/W2026302857","https://openalex.org/W2026893402","https://openalex.org/W2028709282","https://openalex.org/W2034479113","https://openalex.org/W2035476608","https://openalex.org/W2036078075","https://openalex.org/W2049170719","https://openalex.org/W2049231620","https://openalex.org/W2062202510","https://openalex.org/W2062657631","https://openalex.org/W2077770566","https://openalex.org/W2097382431","https://openalex.org/W2107745473","https://openalex.org/W2116513710","https://openalex.org/W2128607924","https://openalex.org/W2133248397","https://openalex.org/W2134911069","https://openalex.org/W2135905685","https://openalex.org/W2146703483","https://openalex.org/W2152290683","https://openalex.org/W2165988944","https://openalex.org/W2484634947","https://openalex.org/W3214380909","https://openalex.org/W4245668478"],"related_works":["https://openalex.org/W2364370872","https://openalex.org/W2053269318","https://openalex.org/W2025614924","https://openalex.org/W2294335174","https://openalex.org/W2097963413","https://openalex.org/W2995886640","https://openalex.org/W1591475660","https://openalex.org/W2001275470","https://openalex.org/W3145575561","https://openalex.org/W2164162849"],"abstract_inverted_index":null,"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":3},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":5},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":4},{"year":2013,"cited_by_count":4},{"year":2012,"cited_by_count":3}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
