{"id":"https://openalex.org/W1886845950","doi":"https://doi.org/10.1007/978-3-642-03845-7_4","title":"Modelling Biological Clocks with Bio-PEPA: Stochasticity and Robustness for the Neurospora crassa Circadian Network","display_name":"Modelling Biological Clocks with Bio-PEPA: Stochasticity and Robustness for the Neurospora crassa Circadian Network","publication_year":2009,"publication_date":"2009-01-01","ids":{"openalex":"https://openalex.org/W1886845950","doi":"https://doi.org/10.1007/978-3-642-03845-7_4","mag":"1886845950"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-642-03845-7_4","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-642-03845-7_4","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5014444761","display_name":"Ozgur E. Akman","orcid":"https://orcid.org/0000-0002-9320-5958"},"institutions":[{"id":"https://openalex.org/I98677209","display_name":"University of Edinburgh","ror":"https://ror.org/01nrxwf90","country_code":"GB","type":"education","lineage":["https://openalex.org/I98677209"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Ozgur E. Akman","raw_affiliation_strings":["Centre for Systems Biology at Edinburgh, The University of Edinburgh, Edinburgh, EH9 3JU, Scotland, UK"],"affiliations":[{"raw_affiliation_string":"Centre for Systems Biology at Edinburgh, The University of Edinburgh, Edinburgh, EH9 3JU, Scotland, UK","institution_ids":["https://openalex.org/I98677209"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029204097","display_name":"Federica Ciocchetta","orcid":null},"institutions":[{"id":"https://openalex.org/I2802934434","display_name":"The Microsoft Research - University of Trento Centre for Computational and Systems Biology","ror":"https://ror.org/04kcgyj43","country_code":"IT","type":"nonprofit","lineage":["https://openalex.org/I1290206253","https://openalex.org/I193223587","https://openalex.org/I2802934434","https://openalex.org/I4210164937"]},{"id":"https://openalex.org/I193223587","display_name":"University of Trento","ror":"https://ror.org/05trd4x28","country_code":"IT","type":"education","lineage":["https://openalex.org/I193223587"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Federica Ciocchetta","raw_affiliation_strings":["The Microsoft Research, University of Trento Centre for Computational and Systems Biology, Trento, Italy"],"affiliations":[{"raw_affiliation_string":"The Microsoft Research, University of Trento Centre for Computational and Systems Biology, Trento, Italy","institution_ids":["https://openalex.org/I2802934434","https://openalex.org/I193223587"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013465452","display_name":"Andrea Degasperi","orcid":"https://orcid.org/0000-0001-6879-0596"},"institutions":[{"id":"https://openalex.org/I98677209","display_name":"University of Edinburgh","ror":"https://ror.org/01nrxwf90","country_code":"GB","type":"education","lineage":["https://openalex.org/I98677209"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Andrea Degasperi","raw_affiliation_strings":["Laboratory for Foundations of Computer Science, The University of Edinburgh, Edinburgh, EH8 9AB, Scotland, UK"],"affiliations":[{"raw_affiliation_string":"Laboratory for Foundations of Computer Science, The University of Edinburgh, Edinburgh, EH8 9AB, Scotland, UK","institution_ids":["https://openalex.org/I98677209"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5110310298","display_name":"Maria Luisa Guerriero","orcid":null},"institutions":[{"id":"https://openalex.org/I7882870","display_name":"University of Glasgow","ror":"https://ror.org/00vtgdb53","country_code":"GB","type":"education","lineage":["https://openalex.org/I7882870"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Maria Luisa Guerriero","raw_affiliation_strings":["Department of Computing Science, The University of Glasgow, Glasgow, G12 8QQ, Scotland, UK"],"affiliations":[{"raw_affiliation_string":"Department of Computing Science, The University of Glasgow, Glasgow, G12 8QQ, Scotland, UK","institution_ids":["https://openalex.org/I7882870"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5014444761"],"corresponding_institution_ids":["https://openalex.org/I98677209"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":5.5715,"has_fulltext":false,"cited_by_count":22,"citation_normalized_percentile":{"value":0.96319321,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":null,"issue":null,"first_page":"52","last_page":"67"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9976999759674072,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9976999759674072,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10342","display_name":"Circadian rhythm and melatonin","score":0.9860000014305115,"subfield":{"id":"https://openalex.org/subfields/2807","display_name":"Endocrine and Autonomic Systems"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12813","display_name":"Plant and Biological Electrophysiology Studies","score":0.9690999984741211,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/neurospora-crassa","display_name":"Neurospora crassa","score":0.9073607921600342},{"id":"https://openalex.org/keywords/robustness","display_name":"Robustness (evolution)","score":0.7517498135566711},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6999782919883728},{"id":"https://openalex.org/keywords/biological-clock","display_name":"Biological clock","score":0.5981404781341553},{"id":"https://openalex.org/keywords/circadian-clock","display_name":"Circadian clock","score":0.5814880728721619},{"id":"https://openalex.org/keywords/circadian-rhythm","display_name":"Circadian rhythm","score":0.3811088800430298},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.23268401622772217},{"id":"https://openalex.org/keywords/neuroscience","display_name":"Neuroscience","score":0.07852554321289062},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.06271174550056458}],"concepts":[{"id":"https://openalex.org/C2776739539","wikidata":"https://www.wikidata.org/wiki/Q133459","display_name":"Neurospora crassa","level":4,"score":0.9073607921600342},{"id":"https://openalex.org/C63479239","wikidata":"https://www.wikidata.org/wiki/Q7353546","display_name":"Robustness (evolution)","level":3,"score":0.7517498135566711},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6999782919883728},{"id":"https://openalex.org/C84302363","wikidata":"https://www.wikidata.org/wiki/Q16154683","display_name":"Biological clock","level":3,"score":0.5981404781341553},{"id":"https://openalex.org/C38606739","wikidata":"https://www.wikidata.org/wiki/Q5121352","display_name":"Circadian clock","level":3,"score":0.5814880728721619},{"id":"https://openalex.org/C121446783","wikidata":"https://www.wikidata.org/wiki/Q208353","display_name":"Circadian rhythm","level":2,"score":0.3811088800430298},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.23268401622772217},{"id":"https://openalex.org/C169760540","wikidata":"https://www.wikidata.org/wiki/Q207011","display_name":"Neuroscience","level":1,"score":0.07852554321289062},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.06271174550056458},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C143065580","wikidata":"https://www.wikidata.org/wiki/Q3285695","display_name":"Mutant","level":3,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1007/978-3-642-03845-7_4","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-642-03845-7_4","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.406.7018","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.406.7018","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://homepages.inf.ed.ac.uk/jeh/Bio-PEPA/circadian_clock_paper.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.452.8000","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.452.8000","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://people.exeter.ac.uk/oea201/AkmanLNCS09.pdf","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2160003213","display_name":null,"funder_award_id":"BB/D019621/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"}],"funders":[{"id":"https://openalex.org/F4320334629","display_name":"Biotechnology and Biological Sciences Research Council","ror":"https://ror.org/00cwqg982"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":37,"referenced_works":["https://openalex.org/W1484069803","https://openalex.org/W1484198052","https://openalex.org/W1530371171","https://openalex.org/W1544529442","https://openalex.org/W1964504813","https://openalex.org/W1973890190","https://openalex.org/W1976971664","https://openalex.org/W1978319180","https://openalex.org/W1979383466","https://openalex.org/W1983350265","https://openalex.org/W1989795443","https://openalex.org/W1998418064","https://openalex.org/W2038192316","https://openalex.org/W2047279254","https://openalex.org/W2061311715","https://openalex.org/W2066440682","https://openalex.org/W2069206422","https://openalex.org/W2073554905","https://openalex.org/W2078734278","https://openalex.org/W2101122984","https://openalex.org/W2101546531","https://openalex.org/W2101682056","https://openalex.org/W2114417962","https://openalex.org/W2120545009","https://openalex.org/W2130618526","https://openalex.org/W2132221336","https://openalex.org/W2135694744","https://openalex.org/W2138190671","https://openalex.org/W2140762895","https://openalex.org/W2144033324","https://openalex.org/W2149037683","https://openalex.org/W2150800446","https://openalex.org/W2152910833","https://openalex.org/W2155418451","https://openalex.org/W2164600365","https://openalex.org/W2171541875","https://openalex.org/W3020843530"],"related_works":["https://openalex.org/W2071690264","https://openalex.org/W2050100795","https://openalex.org/W2140682486","https://openalex.org/W2411520408","https://openalex.org/W4285097245","https://openalex.org/W2090209293","https://openalex.org/W3136837454","https://openalex.org/W2336261422","https://openalex.org/W2009868139","https://openalex.org/W4322488201"],"abstract_inverted_index":null,"counts_by_year":[{"year":2020,"cited_by_count":1},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":1},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":1}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
