{"id":"https://openalex.org/W1506904277","doi":"https://doi.org/10.1007/978-3-540-88562-7_25","title":"Stochastic Analysis of Amino Acid Substitution in Protein Synthesis","display_name":"Stochastic Analysis of Amino Acid Substitution in Protein Synthesis","publication_year":2008,"publication_date":"2008-01-01","ids":{"openalex":"https://openalex.org/W1506904277","doi":"https://doi.org/10.1007/978-3-540-88562-7_25","mag":"1506904277"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-540-88562-7_25","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-540-88562-7_25","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5077791579","display_name":"Dragan Bo\u0161na\u010dki","orcid":"https://orcid.org/0000-0003-4371-4436"},"institutions":[{"id":"https://openalex.org/I83019370","display_name":"Eindhoven University of Technology","ror":"https://ror.org/02c2kyt77","country_code":"NL","type":"education","lineage":["https://openalex.org/I83019370"]}],"countries":["NL"],"is_corresponding":true,"raw_author_name":"D. Bo\u0161na\u010dki","raw_affiliation_strings":["[Department of Biomedical Engineering, Eindhoven University of Technology]"],"affiliations":[{"raw_affiliation_string":"[Department of Biomedical Engineering, Eindhoven University of Technology]","institution_ids":["https://openalex.org/I83019370"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057857248","display_name":"Huub M. M. ten Eikelder","orcid":"https://orcid.org/0000-0002-4098-0715"},"institutions":[{"id":"https://openalex.org/I83019370","display_name":"Eindhoven University of Technology","ror":"https://ror.org/02c2kyt77","country_code":"NL","type":"education","lineage":["https://openalex.org/I83019370"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"H. M. M. ten Eikelder","raw_affiliation_strings":["Dept. of Biomedical Engineering, Eindhoven University of Technology, Netherlands"],"affiliations":[{"raw_affiliation_string":"Dept. of Biomedical Engineering, Eindhoven University of Technology, Netherlands","institution_ids":["https://openalex.org/I83019370"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061415300","display_name":"Marvin Steijaert","orcid":null},"institutions":[{"id":"https://openalex.org/I83019370","display_name":"Eindhoven University of Technology","ror":"https://ror.org/02c2kyt77","country_code":"NL","type":"education","lineage":["https://openalex.org/I83019370"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"M. N. Steijaert","raw_affiliation_strings":["Dept. of Biomedical Engineering, Eindhoven University of Technology, Netherlands","[Department of Biomedical Engineering, Eindhoven University of Technology]"],"affiliations":[{"raw_affiliation_string":"Dept. of Biomedical Engineering, Eindhoven University of Technology, Netherlands","institution_ids":["https://openalex.org/I83019370"]},{"raw_affiliation_string":"[Department of Biomedical Engineering, Eindhoven University of Technology]","institution_ids":["https://openalex.org/I83019370"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5018760156","display_name":"E.P. de Vink","orcid":"https://orcid.org/0000-0001-9514-2260"},"institutions":[{"id":"https://openalex.org/I83019370","display_name":"Eindhoven University of Technology","ror":"https://ror.org/02c2kyt77","country_code":"NL","type":"education","lineage":["https://openalex.org/I83019370"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"E. P. de Vink","raw_affiliation_strings":["Dept. of Mathematics and Computer Science, Eindhoven University of Technology, Netherlands","Department of Mathematics and Computer Science, Eindhoven University of Technology"],"affiliations":[{"raw_affiliation_string":"Dept. of Mathematics and Computer Science, Eindhoven University of Technology, Netherlands","institution_ids":["https://openalex.org/I83019370"]},{"raw_affiliation_string":"Department of Mathematics and Computer Science, Eindhoven University of Technology","institution_ids":["https://openalex.org/I83019370"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5077791579"],"corresponding_institution_ids":["https://openalex.org/I83019370"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":4.7056,"has_fulltext":false,"cited_by_count":11,"citation_normalized_percentile":{"value":0.94121557,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":null,"issue":null,"first_page":"367","last_page":"386"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9962000250816345,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10911","display_name":"Chemical Synthesis and Analysis","score":0.9950000047683716,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/amino-acid","display_name":"Amino acid","score":0.713477611541748},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6722171902656555},{"id":"https://openalex.org/keywords/translation","display_name":"Translation (biology)","score":0.6382611989974976},{"id":"https://openalex.org/keywords/probabilistic-logic","display_name":"Probabilistic logic","score":0.5710409283638},{"id":"https://openalex.org/keywords/ribosome","display_name":"Ribosome","score":0.5260265469551086},{"id":"https://openalex.org/keywords/substitution","display_name":"Substitution (logic)","score":0.493990957736969},{"id":"https://openalex.org/keywords/matrix","display_name":"Matrix (chemical analysis)","score":0.4522845447063446},{"id":"https://openalex.org/keywords/transfer-rna","display_name":"Transfer RNA","score":0.44365009665489197},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.4075056314468384},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.33249813318252563},{"id":"https://openalex.org/keywords/messenger-rna","display_name":"Messenger RNA","score":0.276288777589798},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.22040075063705444},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.1769137978553772},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.15984833240509033},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.1417750120162964},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.14144983887672424},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.13915547728538513},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.10721367597579956}],"concepts":[{"id":"https://openalex.org/C515207424","wikidata":"https://www.wikidata.org/wiki/Q8066","display_name":"Amino acid","level":2,"score":0.713477611541748},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6722171902656555},{"id":"https://openalex.org/C149364088","wikidata":"https://www.wikidata.org/wiki/Q185917","display_name":"Translation (biology)","level":4,"score":0.6382611989974976},{"id":"https://openalex.org/C49937458","wikidata":"https://www.wikidata.org/wiki/Q2599292","display_name":"Probabilistic logic","level":2,"score":0.5710409283638},{"id":"https://openalex.org/C88478588","wikidata":"https://www.wikidata.org/wiki/Q42244","display_name":"Ribosome","level":4,"score":0.5260265469551086},{"id":"https://openalex.org/C2778220771","wikidata":"https://www.wikidata.org/wiki/Q1522579","display_name":"Substitution (logic)","level":2,"score":0.493990957736969},{"id":"https://openalex.org/C106487976","wikidata":"https://www.wikidata.org/wiki/Q685816","display_name":"Matrix (chemical analysis)","level":2,"score":0.4522845447063446},{"id":"https://openalex.org/C153957851","wikidata":"https://www.wikidata.org/wiki/Q201448","display_name":"Transfer RNA","level":4,"score":0.44365009665489197},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.4075056314468384},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.33249813318252563},{"id":"https://openalex.org/C105580179","wikidata":"https://www.wikidata.org/wiki/Q188928","display_name":"Messenger RNA","level":3,"score":0.276288777589798},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.22040075063705444},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.1769137978553772},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.15984833240509033},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.1417750120162964},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.14144983887672424},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.13915547728538513},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.10721367597579956},{"id":"https://openalex.org/C43617362","wikidata":"https://www.wikidata.org/wiki/Q170050","display_name":"Chromatography","level":1,"score":0.0}],"mesh":[],"locations_count":6,"locations":[{"id":"doi:10.1007/978-3-540-88562-7_25","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-540-88562-7_25","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},{"id":"pmh:oai:pure.tue.nl:openaire_cris_publications/645b957e-e3a3-422e-9765-210d5cfd1686","is_oa":false,"landing_page_url":"https://research.tue.nl/en/publications/645b957e-e3a3-422e-9765-210d5cfd1686","pdf_url":null,"source":{"id":"https://openalex.org/S4406922641","display_name":"TU/e Research Portal","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bosnacki, D, Eikelder, ten, H M M, Steijaert, M N & Vink, de, E P 2008, Stochastic analysis of amino acid substitution in protein synthesis. in M Heimer & A M Uhrmacher (eds), Computational Methods in Systems Biology (6th International Conference, CMSB 2008, Rostock, Germany, October 12-15, 2008, Proceedings). Lecture Notes in Computer Science, vol. 5307, Springer, Berlin, pp. 367-386. https://doi.org/10.1007/978-3-540-88562-7_25","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:666261","is_oa":false,"landing_page_url":"http://library.tue.nl/csp/dare/LinkToRepository.csp?recordnumber=666261","pdf_url":null,"source":{"id":"https://openalex.org/S4406923046","display_name":"TU/e Research Portal (Eindhoven University of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":""},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.178.7596","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.178.7596","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.win.tue.nl/%7Eevink/research/Postscript/cmsb08.pdf","raw_type":"text"},{"id":"pmh:oai:library.tue.nl:666261","is_oa":false,"landing_page_url":"http://repository.tue.nl/666261","pdf_url":null,"source":{"id":"https://openalex.org/S4406923046","display_name":"TU/e Research Portal (Eindhoven University of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":""},{"id":"pmh:tue:oai:pure.tue.nl:publications/645b957e-e3a3-422e-9765-210d5cfd1686","is_oa":false,"landing_page_url":"https://research.tue.nl/nl/publications/645b957e-e3a3-422e-9765-210d5cfd1686","pdf_url":null,"source":{"id":"https://openalex.org/S4306401843","display_name":"Data Archiving and Networked Services (DANS)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1322597698","host_organization_name":"Royal Netherlands Academy of Arts and Sciences","host_organization_lineage":["https://openalex.org/I1322597698"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Computational Methods in Systems Biology (6th International Conference, CMSB 2008, Rostock, Germany, October 12-15, 2008, Proceedings), 367 - 386","raw_type":"info:eu-repo/semantics/conferencepaper"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.6499999761581421,"display_name":"Life in Land","id":"https://metadata.un.org/sdg/15"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":30,"referenced_works":["https://openalex.org/W1515771519","https://openalex.org/W1532361198","https://openalex.org/W1535021717","https://openalex.org/W1606860353","https://openalex.org/W1667182944","https://openalex.org/W1974681176","https://openalex.org/W1979267621","https://openalex.org/W2005120335","https://openalex.org/W2005133715","https://openalex.org/W2017519756","https://openalex.org/W2018057026","https://openalex.org/W2022368654","https://openalex.org/W2031536080","https://openalex.org/W2034768847","https://openalex.org/W2042700625","https://openalex.org/W2047483227","https://openalex.org/W2047706687","https://openalex.org/W2063029946","https://openalex.org/W2080428730","https://openalex.org/W2110796675","https://openalex.org/W2118039525","https://openalex.org/W2118391959","https://openalex.org/W2118835619","https://openalex.org/W2144063122","https://openalex.org/W2162943184","https://openalex.org/W2568382713","https://openalex.org/W2586806585","https://openalex.org/W2601913882","https://openalex.org/W2611943439","https://openalex.org/W4249610466"],"related_works":["https://openalex.org/W2379444625","https://openalex.org/W2393147081","https://openalex.org/W2575869988","https://openalex.org/W4308647020","https://openalex.org/W2370088286","https://openalex.org/W2385568494","https://openalex.org/W2912058948","https://openalex.org/W2588424405","https://openalex.org/W2042068218","https://openalex.org/W4327590948"],"abstract_inverted_index":null,"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":2}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}