{"id":"https://openalex.org/W1519328443","doi":"https://doi.org/10.1007/978-3-540-27793-4_9","title":"Qualitative Modelling of Genetic Networks: From Logical Regulatory Graphs to Standard Petri Nets","display_name":"Qualitative Modelling of Genetic Networks: From Logical Regulatory Graphs to Standard Petri Nets","publication_year":2004,"publication_date":"2004-01-01","ids":{"openalex":"https://openalex.org/W1519328443","doi":"https://doi.org/10.1007/978-3-540-27793-4_9","mag":"1519328443"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-540-27793-4_9","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-540-27793-4_9","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5038231285","display_name":"Claudine Chaouiya","orcid":"https://orcid.org/0000-0003-2350-0756"},"institutions":[{"id":"https://openalex.org/I4210120427","display_name":"Institut de Biologie du D\u00e9veloppement Marseille","ror":"https://ror.org/02me5cy06","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I21491767","https://openalex.org/I4210096427","https://openalex.org/I4210120427"]},{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"funder","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Claudine Chaouiya","raw_affiliation_strings":["Laboratoire de G\u00e9n\u00e9tique et Physiologie du D\u00e9veloppement IBDM, CNRS INSERM, Universit\u00e9 de la M\u00e9diterran\u00e9e Campus de Luminy, 13288, Marseille Cedex 9, France"],"affiliations":[{"raw_affiliation_string":"Laboratoire de G\u00e9n\u00e9tique et Physiologie du D\u00e9veloppement IBDM, CNRS INSERM, Universit\u00e9 de la M\u00e9diterran\u00e9e Campus de Luminy, 13288, Marseille Cedex 9, France","institution_ids":["https://openalex.org/I154526488","https://openalex.org/I4210120427","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080878366","display_name":"\u00c9lisabeth R\u00e9my","orcid":"https://orcid.org/0000-0001-8560-8178"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Elisabeth Remy","raw_affiliation_strings":["Institut de Math\u00e9matiques de Luminy CNRS, Universit\u00e9 de la M\u00e9diterran\u00e9e Campus de Luminy, 13288, Marseille Cedex 9, France"],"affiliations":[{"raw_affiliation_string":"Institut de Math\u00e9matiques de Luminy CNRS, Universit\u00e9 de la M\u00e9diterran\u00e9e Campus de Luminy, 13288, Marseille Cedex 9, France","institution_ids":["https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055526988","display_name":"Paul Ruet","orcid":null},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Paul Ruet","raw_affiliation_strings":["Institut de Math\u00e9matiques de Luminy CNRS, Universit\u00e9 de la M\u00e9diterran\u00e9e Campus de Luminy, 13288, Marseille Cedex 9, France"],"affiliations":[{"raw_affiliation_string":"Institut de Math\u00e9matiques de Luminy CNRS, Universit\u00e9 de la M\u00e9diterran\u00e9e Campus de Luminy, 13288, Marseille Cedex 9, France","institution_ids":["https://openalex.org/I1294671590"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5081933836","display_name":"Denis Thieffry","orcid":"https://orcid.org/0000-0003-0271-1757"},"institutions":[{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"funder","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4210120427","display_name":"Institut de Biologie du D\u00e9veloppement Marseille","ror":"https://ror.org/02me5cy06","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I21491767","https://openalex.org/I4210096427","https://openalex.org/I4210120427"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Denis Thieffry","raw_affiliation_strings":["Laboratoire de G\u00e9n\u00e9tique et Physiologie du D\u00e9veloppement IBDM, CNRS INSERM, Universit\u00e9 de la M\u00e9diterran\u00e9e Campus de Luminy, 13288, Marseille Cedex 9, France"],"affiliations":[{"raw_affiliation_string":"Laboratoire de G\u00e9n\u00e9tique et Physiologie du D\u00e9veloppement IBDM, CNRS INSERM, Universit\u00e9 de la M\u00e9diterran\u00e9e Campus de Luminy, 13288, Marseille Cedex 9, France","institution_ids":["https://openalex.org/I154526488","https://openalex.org/I4210120427","https://openalex.org/I1294671590"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5038231285"],"corresponding_institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I154526488","https://openalex.org/I4210120427"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":8.704,"has_fulltext":false,"cited_by_count":68,"citation_normalized_percentile":{"value":0.97931132,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":null,"issue":null,"first_page":"137","last_page":"156"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12029","display_name":"DNA and Biological Computing","score":0.9829000234603882,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9732999801635742,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/petri-net","display_name":"Petri net","score":0.8873366117477417},{"id":"https://openalex.org/keywords/rotation-formalisms-in-three-dimensions","display_name":"Rotation formalisms in three dimensions","score":0.8708016872406006},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7950966954231262},{"id":"https://openalex.org/keywords/rewriting","display_name":"Rewriting","score":0.5980973839759827},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.541671633720398},{"id":"https://openalex.org/keywords/logical-conjunction","display_name":"Logical conjunction","score":0.45830467343330383},{"id":"https://openalex.org/keywords/gene-regulatory-network","display_name":"Gene regulatory network","score":0.45605891942977905},{"id":"https://openalex.org/keywords/stochastic-petri-net","display_name":"Stochastic Petri net","score":0.4223887622356415},{"id":"https://openalex.org/keywords/distributed-computing","display_name":"Distributed computing","score":0.31789135932922363},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.27041512727737427},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.11078619956970215},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.08969873189926147}],"concepts":[{"id":"https://openalex.org/C38677869","wikidata":"https://www.wikidata.org/wiki/Q724168","display_name":"Petri net","level":2,"score":0.8873366117477417},{"id":"https://openalex.org/C171018156","wikidata":"https://www.wikidata.org/wiki/Q7370306","display_name":"Rotation formalisms in three dimensions","level":2,"score":0.8708016872406006},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7950966954231262},{"id":"https://openalex.org/C154690210","wikidata":"https://www.wikidata.org/wiki/Q1668499","display_name":"Rewriting","level":2,"score":0.5980973839759827},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.541671633720398},{"id":"https://openalex.org/C21847791","wikidata":"https://www.wikidata.org/wiki/Q191081","display_name":"Logical conjunction","level":2,"score":0.45830467343330383},{"id":"https://openalex.org/C67339327","wikidata":"https://www.wikidata.org/wiki/Q1502576","display_name":"Gene regulatory network","level":4,"score":0.45605891942977905},{"id":"https://openalex.org/C197551870","wikidata":"https://www.wikidata.org/wiki/Q7617809","display_name":"Stochastic Petri net","level":3,"score":0.4223887622356415},{"id":"https://openalex.org/C120314980","wikidata":"https://www.wikidata.org/wiki/Q180634","display_name":"Distributed computing","level":1,"score":0.31789135932922363},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.27041512727737427},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.11078619956970215},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.08969873189926147},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1007/978-3-540-27793-4_9","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-540-27793-4_9","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.74.4374","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.74.4374","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://iml.univ-mrs.fr/~ruet/PAPIERS/icatpn.ps.gz","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.550000011920929,"display_name":"Partnerships for the goals","id":"https://metadata.un.org/sdg/17"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":18,"referenced_works":["https://openalex.org/W154417448","https://openalex.org/W1486453207","https://openalex.org/W1563476066","https://openalex.org/W1599424389","https://openalex.org/W1986755980","https://openalex.org/W1996109622","https://openalex.org/W2001026694","https://openalex.org/W2005486846","https://openalex.org/W2031369606","https://openalex.org/W2046538693","https://openalex.org/W2047496194","https://openalex.org/W2058221907","https://openalex.org/W2059291619","https://openalex.org/W2065546165","https://openalex.org/W2100486049","https://openalex.org/W2104855667","https://openalex.org/W2412839122","https://openalex.org/W4249538237"],"related_works":["https://openalex.org/W57206970","https://openalex.org/W3196191855","https://openalex.org/W1950785758","https://openalex.org/W4235091896","https://openalex.org/W2023896637","https://openalex.org/W2185981755","https://openalex.org/W1991936877","https://openalex.org/W2018707057","https://openalex.org/W2374990887","https://openalex.org/W2058221907"],"abstract_inverted_index":null,"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":3},{"year":2016,"cited_by_count":3},{"year":2014,"cited_by_count":3},{"year":2013,"cited_by_count":5},{"year":2012,"cited_by_count":5}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
