{"id":"https://openalex.org/W1845814381","doi":"https://doi.org/10.1007/978-3-540-24745-6_6","title":"On the Application of Formal Principles to Life Science Data: a Case Study in the Gene Ontology","display_name":"On the Application of Formal Principles to Life Science Data: a Case Study in the Gene Ontology","publication_year":2004,"publication_date":"2004-01-01","ids":{"openalex":"https://openalex.org/W1845814381","doi":"https://doi.org/10.1007/978-3-540-24745-6_6","mag":"1845814381"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-540-24745-6_6","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-540-24745-6_6","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5051216244","display_name":"Barry Smith","orcid":"https://orcid.org/0000-0003-1384-116X"},"institutions":[{"id":"https://openalex.org/I63190737","display_name":"University at Buffalo, State University of New York","ror":"https://ror.org/01y64my43","country_code":"US","type":"education","lineage":["https://openalex.org/I63190737"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Barry Smith","raw_affiliation_strings":["Department of Philosophy, University at Buffalo,","Institute for Formal Ontology and Medical Information Science, University at Leipzig,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Philosophy, University at Buffalo,","institution_ids":["https://openalex.org/I63190737"]},{"raw_affiliation_string":"Institute for Formal Ontology and Medical Information Science, University at Leipzig,","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061018339","display_name":"Jacob K\u00f6hler","orcid":null},"institutions":[{"id":"https://openalex.org/I20121455","display_name":"Bielefeld University","ror":"https://ror.org/02hpadn98","country_code":"DE","type":"education","lineage":["https://openalex.org/I20121455"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Jacob K\u00f6hler","raw_affiliation_strings":["Department of Bioinformatics, University of Bielefeld,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics, University of Bielefeld,","institution_ids":["https://openalex.org/I20121455"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5015745621","display_name":"Anand Kumar","orcid":"https://orcid.org/0000-0002-0001-6710"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Anand Kumar","raw_affiliation_strings":["Institute for Formal Ontology and Medical Information Science, University at Leipzig,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Formal Ontology and Medical Information Science, University at Leipzig,","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":19.8847,"has_fulltext":false,"cited_by_count":102,"citation_normalized_percentile":{"value":0.99519503,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":null,"issue":null,"first_page":"79","last_page":"94"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9966999888420105,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.8659639358520508},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7970500588417053},{"id":"https://openalex.org/keywords/ontology-based-data-integration","display_name":"Ontology-based data integration","score":0.7743398547172546},{"id":"https://openalex.org/keywords/process-ontology","display_name":"Process ontology","score":0.650749683380127},{"id":"https://openalex.org/keywords/upper-ontology","display_name":"Upper ontology","score":0.6157609224319458},{"id":"https://openalex.org/keywords/formal-ontology","display_name":"Formal ontology","score":0.5668188333511353},{"id":"https://openalex.org/keywords/ontology-alignment","display_name":"Ontology alignment","score":0.5611124038696289},{"id":"https://openalex.org/keywords/open-biomedical-ontologies","display_name":"Open Biomedical Ontologies","score":0.5405463576316833},{"id":"https://openalex.org/keywords/field","display_name":"Field (mathematics)","score":0.5361082553863525},{"id":"https://openalex.org/keywords/suggested-upper-merged-ontology","display_name":"Suggested Upper Merged Ontology","score":0.5153017044067383},{"id":"https://openalex.org/keywords/data-integration","display_name":"Data integration","score":0.4955645799636841},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.47171351313591003},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.4550621509552002},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.26736557483673096},{"id":"https://openalex.org/keywords/semantic-web","display_name":"Semantic Web","score":0.12946054339408875}],"concepts":[{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.8659639358520508},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7970500588417053},{"id":"https://openalex.org/C22550185","wikidata":"https://www.wikidata.org/wiki/Q7095047","display_name":"Ontology-based data integration","level":3,"score":0.7743398547172546},{"id":"https://openalex.org/C137003198","wikidata":"https://www.wikidata.org/wiki/Q7247296","display_name":"Process ontology","level":3,"score":0.650749683380127},{"id":"https://openalex.org/C78726541","wikidata":"https://www.wikidata.org/wiki/Q3882785","display_name":"Upper ontology","level":3,"score":0.6157609224319458},{"id":"https://openalex.org/C2778177438","wikidata":"https://www.wikidata.org/wiki/Q1437388","display_name":"Formal ontology","level":4,"score":0.5668188333511353},{"id":"https://openalex.org/C98893333","wikidata":"https://www.wikidata.org/wiki/Q4339878","display_name":"Ontology alignment","level":4,"score":0.5611124038696289},{"id":"https://openalex.org/C137982476","wikidata":"https://www.wikidata.org/wiki/Q7072326","display_name":"Open Biomedical Ontologies","level":5,"score":0.5405463576316833},{"id":"https://openalex.org/C9652623","wikidata":"https://www.wikidata.org/wiki/Q190109","display_name":"Field (mathematics)","level":2,"score":0.5361082553863525},{"id":"https://openalex.org/C50971890","wikidata":"https://www.wikidata.org/wiki/Q7635093","display_name":"Suggested Upper Merged Ontology","level":4,"score":0.5153017044067383},{"id":"https://openalex.org/C72634772","wikidata":"https://www.wikidata.org/wiki/Q386824","display_name":"Data integration","level":2,"score":0.4955645799636841},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.47171351313591003},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.4550621509552002},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.26736557483673096},{"id":"https://openalex.org/C2129575","wikidata":"https://www.wikidata.org/wiki/Q54837","display_name":"Semantic Web","level":2,"score":0.12946054339408875},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C202444582","wikidata":"https://www.wikidata.org/wiki/Q837863","display_name":"Pure mathematics","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1007/978-3-540-24745-6_6","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-540-24745-6_6","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},{"id":"pmh:oai:philarchive.org/rec/SMIOTA-7","is_oa":false,"landing_page_url":"https://philarchive.org/rec/SMIOTA-7","pdf_url":null,"source":{"id":"https://openalex.org/S4306402130","display_name":"PhilPapers (PhilPapers Foundation)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:philpapers.org/rec/SMIOTA-7","is_oa":false,"landing_page_url":"https://philpapers.org/rec/SMIOTA-7","pdf_url":null,"source":{"id":"https://openalex.org/S4306402131","display_name":"PhilPapers (PhilPapers Foundation)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/12","display_name":"Responsible consumption and production","score":0.5099999904632568}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":25,"referenced_works":["https://openalex.org/W271927710","https://openalex.org/W630393885","https://openalex.org/W1485872235","https://openalex.org/W1508830776","https://openalex.org/W1555643513","https://openalex.org/W1836367264","https://openalex.org/W1963841093","https://openalex.org/W2015914309","https://openalex.org/W2041428546","https://openalex.org/W2079665010","https://openalex.org/W2103017472","https://openalex.org/W2103907281","https://openalex.org/W2112212788","https://openalex.org/W2112479620","https://openalex.org/W2114049512","https://openalex.org/W2118591827","https://openalex.org/W2133992441","https://openalex.org/W2134899277","https://openalex.org/W2138437366","https://openalex.org/W2139135093","https://openalex.org/W2152844712","https://openalex.org/W2155977281","https://openalex.org/W2160948978","https://openalex.org/W2163107094","https://openalex.org/W2163670493"],"related_works":["https://openalex.org/W2732632690","https://openalex.org/W2608149786","https://openalex.org/W2396086199","https://openalex.org/W2365397974","https://openalex.org/W152870918","https://openalex.org/W2102229151","https://openalex.org/W149627178","https://openalex.org/W1794266373","https://openalex.org/W2012420033","https://openalex.org/W2150106658"],"abstract_inverted_index":null,"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":5},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":4},{"year":2012,"cited_by_count":3}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
