{"id":"https://openalex.org/W2888384290","doi":"https://doi.org/10.1007/978-3-319-99429-1_1","title":"Modeling and Engineering Promoters with Pre-defined RNA Production Dynamics in Escherichia Coli","display_name":"Modeling and Engineering Promoters with Pre-defined RNA Production Dynamics in Escherichia Coli","publication_year":2018,"publication_date":"2018-01-01","ids":{"openalex":"https://openalex.org/W2888384290","doi":"https://doi.org/10.1007/978-3-319-99429-1_1","mag":"2888384290"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-319-99429-1_1","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-319-99429-1_1","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5038008485","display_name":"Samuel M. D. Oliveira","orcid":"https://orcid.org/0000-0002-6914-5529"},"institutions":[{"id":"https://openalex.org/I4210133110","display_name":"Tampere University","ror":null,"country_code":"FI","type":null,"lineage":["https://openalex.org/I4210133110"]}],"countries":["FI"],"is_corresponding":true,"raw_author_name":"Samuel M. D. Oliveira","raw_affiliation_strings":["Laboratory of Biosystem Dynamics, BioMediTech Institute, Tampere University of Technology, P.O. Box 553, 33101, Tampere, Finland"],"affiliations":[{"raw_affiliation_string":"Laboratory of Biosystem Dynamics, BioMediTech Institute, Tampere University of Technology, P.O. Box 553, 33101, Tampere, Finland","institution_ids":["https://openalex.org/I4210133110"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030826513","display_name":"Mohamed N. M. Bahrudeen","orcid":"https://orcid.org/0000-0003-3717-0583"},"institutions":[{"id":"https://openalex.org/I4210133110","display_name":"Tampere University","ror":null,"country_code":"FI","type":null,"lineage":["https://openalex.org/I4210133110"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Mohamed N. M. Bahrudeen","raw_affiliation_strings":["Laboratory of Biosystem Dynamics, BioMediTech Institute, Tampere University of Technology, P.O. Box 553, 33101, Tampere, Finland"],"affiliations":[{"raw_affiliation_string":"Laboratory of Biosystem Dynamics, BioMediTech Institute, Tampere University of Technology, P.O. Box 553, 33101, Tampere, Finland","institution_ids":["https://openalex.org/I4210133110"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050205062","display_name":"Sofia Startceva","orcid":"https://orcid.org/0000-0002-2531-5530"},"institutions":[{"id":"https://openalex.org/I4210133110","display_name":"Tampere University","ror":null,"country_code":"FI","type":null,"lineage":["https://openalex.org/I4210133110"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Sofia Startceva","raw_affiliation_strings":["Laboratory of Biosystem Dynamics, BioMediTech Institute, Tampere University of Technology, P.O. Box 553, 33101, Tampere, Finland"],"affiliations":[{"raw_affiliation_string":"Laboratory of Biosystem Dynamics, BioMediTech Institute, Tampere University of Technology, P.O. Box 553, 33101, Tampere, Finland","institution_ids":["https://openalex.org/I4210133110"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035468887","display_name":"Vinodh Kandavalli","orcid":"https://orcid.org/0000-0001-8788-9399"},"institutions":[{"id":"https://openalex.org/I4210133110","display_name":"Tampere University","ror":null,"country_code":"FI","type":null,"lineage":["https://openalex.org/I4210133110"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Vinodh Kandavalli","raw_affiliation_strings":["Laboratory of Biosystem Dynamics, BioMediTech Institute, Tampere University of Technology, P.O. Box 553, 33101, Tampere, Finland"],"affiliations":[{"raw_affiliation_string":"Laboratory of Biosystem Dynamics, BioMediTech Institute, Tampere University of Technology, P.O. Box 553, 33101, Tampere, Finland","institution_ids":["https://openalex.org/I4210133110"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5040628945","display_name":"Andr\u00e9 S. Ribeiro","orcid":"https://orcid.org/0000-0002-7255-5211"},"institutions":[{"id":"https://openalex.org/I4210133110","display_name":"Tampere University","ror":null,"country_code":"FI","type":null,"lineage":["https://openalex.org/I4210133110"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Andre S. Ribeiro","raw_affiliation_strings":["Laboratory of Biosystem Dynamics, BioMediTech Institute, Tampere University of Technology, P.O. Box 553, 33101, Tampere, Finland"],"affiliations":[{"raw_affiliation_string":"Laboratory of Biosystem Dynamics, BioMediTech Institute, Tampere University of Technology, P.O. Box 553, 33101, Tampere, Finland","institution_ids":["https://openalex.org/I4210133110"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5038008485"],"corresponding_institution_ids":["https://openalex.org/I4210133110"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.10577244,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"3","last_page":"20"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10120","display_name":"Bacterial Genetics and Biotechnology","score":0.9972000122070312,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9939000010490417,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/promoter","display_name":"Promoter","score":0.6466445922851562},{"id":"https://openalex.org/keywords/synthetic-biology","display_name":"Synthetic biology","score":0.5986043810844421},{"id":"https://openalex.org/keywords/population","display_name":"Population","score":0.5568274259567261},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.5073999762535095},{"id":"https://openalex.org/keywords/stochastic-modelling","display_name":"Stochastic modelling","score":0.4628775119781494},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4464447498321533},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.44376426935195923},{"id":"https://openalex.org/keywords/biological-system","display_name":"Biological system","score":0.38313043117523193},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.33306920528411865},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.2991614043712616},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2659493684768677},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.2256845235824585},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.21458065509796143}],"concepts":[{"id":"https://openalex.org/C101762097","wikidata":"https://www.wikidata.org/wiki/Q224093","display_name":"Promoter","level":4,"score":0.6466445922851562},{"id":"https://openalex.org/C191908910","wikidata":"https://www.wikidata.org/wiki/Q862838","display_name":"Synthetic biology","level":2,"score":0.5986043810844421},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.5568274259567261},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.5073999762535095},{"id":"https://openalex.org/C127491075","wikidata":"https://www.wikidata.org/wiki/Q7617825","display_name":"Stochastic modelling","level":2,"score":0.4628775119781494},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4464447498321533},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.44376426935195923},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.38313043117523193},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.33306920528411865},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.2991614043712616},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2659493684768677},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.2256845235824585},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.21458065509796143},{"id":"https://openalex.org/C149923435","wikidata":"https://www.wikidata.org/wiki/Q37732","display_name":"Demography","level":1,"score":0.0},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1007/978-3-319-99429-1_1","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-319-99429-1_1","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},{"id":"pmh:oai:trepo.tuni.fi:10024/214834","is_oa":false,"landing_page_url":"https://trepo.tuni.fi/handle/10024/214834","pdf_url":null,"source":{"id":"https://openalex.org/S7407055260","display_name":"Trepo - Institutional Repository of Tampere University","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"conference"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":50,"referenced_works":["https://openalex.org/W208046272","https://openalex.org/W1209898887","https://openalex.org/W1509938542","https://openalex.org/W1630242350","https://openalex.org/W1648346008","https://openalex.org/W1949254134","https://openalex.org/W1980695770","https://openalex.org/W1991788863","https://openalex.org/W1996691828","https://openalex.org/W2003470745","https://openalex.org/W2021818413","https://openalex.org/W2023524368","https://openalex.org/W2024498258","https://openalex.org/W2026888821","https://openalex.org/W2041030563","https://openalex.org/W2048611431","https://openalex.org/W2049222491","https://openalex.org/W2049492969","https://openalex.org/W2052094781","https://openalex.org/W2053460598","https://openalex.org/W2054979333","https://openalex.org/W2057746324","https://openalex.org/W2066010536","https://openalex.org/W2066165481","https://openalex.org/W2067660191","https://openalex.org/W2085990641","https://openalex.org/W2087612299","https://openalex.org/W2110310164","https://openalex.org/W2116499240","https://openalex.org/W2117956780","https://openalex.org/W2127465341","https://openalex.org/W2131195283","https://openalex.org/W2134440848","https://openalex.org/W2135054636","https://openalex.org/W2140158396","https://openalex.org/W2141021005","https://openalex.org/W2148641266","https://openalex.org/W2153935608","https://openalex.org/W2155418451","https://openalex.org/W2155982020","https://openalex.org/W2165511425","https://openalex.org/W2167244112","https://openalex.org/W2254180417","https://openalex.org/W2323834851","https://openalex.org/W2496201008","https://openalex.org/W2546172043","https://openalex.org/W2725394391","https://openalex.org/W2751771172","https://openalex.org/W2769804249","https://openalex.org/W4233808990"],"related_works":["https://openalex.org/W1969771092","https://openalex.org/W2795723184","https://openalex.org/W2025529750","https://openalex.org/W3141738981","https://openalex.org/W2099102792","https://openalex.org/W2891858816","https://openalex.org/W4254255930","https://openalex.org/W184057646","https://openalex.org/W2549283853","https://openalex.org/W2122087743"],"abstract_inverted_index":null,"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
