{"id":"https://openalex.org/W4402632026","doi":"https://doi.org/10.1007/978-3-031-71671-3_8","title":"Batch Effect Correction in\u00a0a\u00a0Confounded Scenario: a\u00a0Case Study on\u00a0Gene Expression of\u00a0Chornobyl Tree Frogs","display_name":"Batch Effect Correction in\u00a0a\u00a0Confounded Scenario: a\u00a0Case Study on\u00a0Gene Expression of\u00a0Chornobyl Tree Frogs","publication_year":2024,"publication_date":"2024-01-01","ids":{"openalex":"https://openalex.org/W4402632026","doi":"https://doi.org/10.1007/978-3-031-71671-3_8"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-031-71671-3_8","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-031-71671-3_8","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://asnr.hal.science/irsn-04715789/document","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5092631496","display_name":"Elen Goujon","orcid":"https://orcid.org/0000-0002-4237-5754"},"institutions":[{"id":"https://openalex.org/I1293448361","display_name":"Institut de Radioprotection et de S\u00fbret\u00e9 Nucl\u00e9aire","ror":"https://ror.org/01ha22c77","country_code":"FR","type":"nonprofit","lineage":["https://openalex.org/I1293448361"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4210107720","display_name":"CentraleSup\u00e9lec","ror":"https://ror.org/019tcpt25","country_code":"FR","type":"facility","lineage":["https://openalex.org/I277688954","https://openalex.org/I4210107720"]},{"id":"https://openalex.org/I277688954","display_name":"Universit\u00e9 Paris-Saclay","ror":"https://ror.org/03xjwb503","country_code":"FR","type":"education","lineage":["https://openalex.org/I277688954"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Elen Goujon","raw_affiliation_strings":["French Institute for Radiation Protection and Nuclear Safety (IRSN), PSE-SANTE/SESANE/LRTOX, 92260, Fontenay-aux-Roses, France","Laboratoire des Signaux et Syst\u00e8mes, Universit\u00e9 Paris-Saclay, CNRS, CentraleSup\u00e9lec, 91190, Gif-sur-Yvette, France"],"affiliations":[{"raw_affiliation_string":"French Institute for Radiation Protection and Nuclear Safety (IRSN), PSE-SANTE/SESANE/LRTOX, 92260, Fontenay-aux-Roses, France","institution_ids":["https://openalex.org/I1293448361"]},{"raw_affiliation_string":"Laboratoire des Signaux et Syst\u00e8mes, Universit\u00e9 Paris-Saclay, CNRS, CentraleSup\u00e9lec, 91190, Gif-sur-Yvette, France","institution_ids":["https://openalex.org/I4210107720","https://openalex.org/I277688954","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056691363","display_name":"Olivier Armant","orcid":"https://orcid.org/0000-0001-7101-9209"},"institutions":[{"id":"https://openalex.org/I4210110641","display_name":"CEA Cadarache","ror":"https://ror.org/01rs1gy10","country_code":"FR","type":"government","lineage":["https://openalex.org/I2738703131","https://openalex.org/I4210110641"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Olivier Armant","raw_affiliation_strings":["IRSN, PSE-ENV/SERPEN/LECO, 13115, Saint-Paul-Lez-Durance, France"],"affiliations":[{"raw_affiliation_string":"IRSN, PSE-ENV/SERPEN/LECO, 13115, Saint-Paul-Lez-Durance, France","institution_ids":["https://openalex.org/I4210110641"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084735974","display_name":"Cl\u00e9ment Car","orcid":"https://orcid.org/0000-0002-2729-2950"},"institutions":[{"id":"https://openalex.org/I4210110641","display_name":"CEA Cadarache","ror":"https://ror.org/01rs1gy10","country_code":"FR","type":"government","lineage":["https://openalex.org/I2738703131","https://openalex.org/I4210110641"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Cl\u00e9ment Car","raw_affiliation_strings":["IRSN, PSE-ENV/SERPEN/LECO, 13115, Saint-Paul-Lez-Durance, France"],"affiliations":[{"raw_affiliation_string":"IRSN, PSE-ENV/SERPEN/LECO, 13115, Saint-Paul-Lez-Durance, France","institution_ids":["https://openalex.org/I4210110641"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057943562","display_name":"Jean\u2010Marc Bonzom","orcid":"https://orcid.org/0000-0002-6526-5769"},"institutions":[{"id":"https://openalex.org/I4210110641","display_name":"CEA Cadarache","ror":"https://ror.org/01rs1gy10","country_code":"FR","type":"government","lineage":["https://openalex.org/I2738703131","https://openalex.org/I4210110641"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Jean-Marc Bonzom","raw_affiliation_strings":["IRSN, PSE-ENV/SERPEN/LECO, 13115, Saint-Paul-Lez-Durance, France"],"affiliations":[{"raw_affiliation_string":"IRSN, PSE-ENV/SERPEN/LECO, 13115, Saint-Paul-Lez-Durance, France","institution_ids":["https://openalex.org/I4210110641"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082608814","display_name":"Arthur Tenenhaus","orcid":"https://orcid.org/0000-0003-3459-1518"},"institutions":[{"id":"https://openalex.org/I4210107720","display_name":"CentraleSup\u00e9lec","ror":"https://ror.org/019tcpt25","country_code":"FR","type":"facility","lineage":["https://openalex.org/I277688954","https://openalex.org/I4210107720"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I277688954","display_name":"Universit\u00e9 Paris-Saclay","ror":"https://ror.org/03xjwb503","country_code":"FR","type":"education","lineage":["https://openalex.org/I277688954"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Arthur Tenenhaus","raw_affiliation_strings":["Laboratoire des Signaux et Syst\u00e8mes, Universit\u00e9 Paris-Saclay, CNRS, CentraleSup\u00e9lec, 91190, Gif-sur-Yvette, France"],"affiliations":[{"raw_affiliation_string":"Laboratoire des Signaux et Syst\u00e8mes, Universit\u00e9 Paris-Saclay, CNRS, CentraleSup\u00e9lec, 91190, Gif-sur-Yvette, France","institution_ids":["https://openalex.org/I4210107720","https://openalex.org/I277688954","https://openalex.org/I1294671590"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5092779646","display_name":"Im\u00e8ne Garali","orcid":"https://orcid.org/0000-0001-5779-5199"},"institutions":[{"id":"https://openalex.org/I1293448361","display_name":"Institut de Radioprotection et de S\u00fbret\u00e9 Nucl\u00e9aire","ror":"https://ror.org/01ha22c77","country_code":"FR","type":"nonprofit","lineage":["https://openalex.org/I1293448361"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Im\u00e8ne Garali","raw_affiliation_strings":["French Institute for Radiation Protection and Nuclear Safety (IRSN), PSE-SANTE/SESANE/LRTOX, 92260, Fontenay-aux-Roses, France"],"affiliations":[{"raw_affiliation_string":"French Institute for Radiation Protection and Nuclear Safety (IRSN), PSE-SANTE/SESANE/LRTOX, 92260, Fontenay-aux-Roses, France","institution_ids":["https://openalex.org/I1293448361"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5092631496"],"corresponding_institution_ids":["https://openalex.org/I1293448361","https://openalex.org/I1294671590","https://openalex.org/I277688954","https://openalex.org/I4210107720"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.36764466,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"89","last_page":"107"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9850999712944031,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9850999712944031,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9772999882698059,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9740999937057495,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7635660171508789},{"id":"https://openalex.org/keywords/tree","display_name":"Tree (set theory)","score":0.7109742760658264},{"id":"https://openalex.org/keywords/expression","display_name":"Expression (computer science)","score":0.5222657322883606},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.4184281527996063},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.34365034103393555},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.17797696590423584},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1615009605884552},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.10236391425132751},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.05965322256088257},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.047498613595962524}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7635660171508789},{"id":"https://openalex.org/C113174947","wikidata":"https://www.wikidata.org/wiki/Q2859736","display_name":"Tree (set theory)","level":2,"score":0.7109742760658264},{"id":"https://openalex.org/C90559484","wikidata":"https://www.wikidata.org/wiki/Q778379","display_name":"Expression (computer science)","level":2,"score":0.5222657322883606},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.4184281527996063},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.34365034103393555},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.17797696590423584},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1615009605884552},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.10236391425132751},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.05965322256088257},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.047498613595962524}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1007/978-3-031-71671-3_8","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-031-71671-3_8","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},{"id":"pmh:oai:HAL:irsn-04715789v1","is_oa":true,"landing_page_url":"https://asnr.hal.science/irsn-04715789","pdf_url":"https://asnr.hal.science/irsn-04715789/document","source":{"id":"https://openalex.org/S4406922461","display_name":"SPIRE - Sciences Po Institutional REpository","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"https://biomedinfo.di.unipi.it/cmsb2024/organization/","raw_type":"Conference papers"}],"best_oa_location":{"id":"pmh:oai:HAL:irsn-04715789v1","is_oa":true,"landing_page_url":"https://asnr.hal.science/irsn-04715789","pdf_url":"https://asnr.hal.science/irsn-04715789/document","source":{"id":"https://openalex.org/S4406922461","display_name":"SPIRE - Sciences Po Institutional REpository","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"https://biomedinfo.di.unipi.it/cmsb2024/organization/","raw_type":"Conference papers"},"sustainable_development_goals":[{"display_name":"Zero hunger","id":"https://metadata.un.org/sdg/2","score":0.46000000834465027}],"awards":[],"funders":[{"id":"https://openalex.org/F4320322760","display_name":"Institut de Radioprotection et de S\u00dbret\u00e9 Nucl\u00e9aire","ror":"https://ror.org/01ha22c77"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4402632026.pdf"},"referenced_works_count":40,"referenced_works":["https://openalex.org/W1999574084","https://openalex.org/W2043795468","https://openalex.org/W2058067814","https://openalex.org/W2096192437","https://openalex.org/W2098290597","https://openalex.org/W2107665951","https://openalex.org/W2113562505","https://openalex.org/W2115003883","https://openalex.org/W2126419817","https://openalex.org/W2133987685","https://openalex.org/W2137499573","https://openalex.org/W2138879180","https://openalex.org/W2146512944","https://openalex.org/W2150542002","https://openalex.org/W2152239989","https://openalex.org/W2169353806","https://openalex.org/W2170551349","https://openalex.org/W2179438025","https://openalex.org/W2473818600","https://openalex.org/W2603756957","https://openalex.org/W2949244194","https://openalex.org/W2952431387","https://openalex.org/W2973336097","https://openalex.org/W2994653454","https://openalex.org/W2996919336","https://openalex.org/W3027051073","https://openalex.org/W3033621848","https://openalex.org/W3088521497","https://openalex.org/W3175752499","https://openalex.org/W3184314483","https://openalex.org/W3206957367","https://openalex.org/W4200534982","https://openalex.org/W4220862992","https://openalex.org/W4225278475","https://openalex.org/W4225795324","https://openalex.org/W4232909036","https://openalex.org/W4317388442","https://openalex.org/W4385411285","https://openalex.org/W4386468546","https://openalex.org/W4391166655"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W4396701345","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W4396696052","https://openalex.org/W2382290278","https://openalex.org/W4395014643"],"abstract_inverted_index":null,"counts_by_year":[],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}