{"id":"https://openalex.org/W4382394724","doi":"https://doi.org/10.1007/978-3-031-34960-7_6","title":"Optimizing Variant Calling for\u00a0Human Genome Analysis: A Comprehensive Pipeline Approach","display_name":"Optimizing Variant Calling for\u00a0Human Genome Analysis: A Comprehensive Pipeline Approach","publication_year":2023,"publication_date":"2023-01-01","ids":{"openalex":"https://openalex.org/W4382394724","doi":"https://doi.org/10.1007/978-3-031-34960-7_6"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-031-34960-7_6","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-031-34960-7_6","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5079044789","display_name":"Miguel Pinheiro","orcid":"https://orcid.org/0000-0002-6601-7513"},"institutions":[{"id":"https://openalex.org/I60858718","display_name":"University of Aveiro","ror":"https://ror.org/00nt41z93","country_code":"PT","type":"education","lineage":["https://openalex.org/I60858718"]}],"countries":["PT"],"is_corresponding":true,"raw_author_name":"Miguel Pinheiro","raw_affiliation_strings":["iBiMED, Department of Medical Sciences, University of Aveiro, Aveiro, Portugal"],"raw_orcid":"https://orcid.org/0000-0002-6601-7513","affiliations":[{"raw_affiliation_string":"iBiMED, Department of Medical Sciences, University of Aveiro, Aveiro, Portugal","institution_ids":["https://openalex.org/I60858718"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030051009","display_name":"Jorge Miguel Silva","orcid":"https://orcid.org/0000-0002-6331-6091"},"institutions":[{"id":"https://openalex.org/I60858718","display_name":"University of Aveiro","ror":"https://ror.org/00nt41z93","country_code":"PT","type":"education","lineage":["https://openalex.org/I60858718"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"Jorge Miguel Silva","raw_affiliation_strings":["IEETA, DETI, LASI, University of Aveiro, Aveiro, Portugal"],"raw_orcid":"https://orcid.org/0000-0002-6331-6091","affiliations":[{"raw_affiliation_string":"IEETA, DETI, LASI, University of Aveiro, Aveiro, Portugal","institution_ids":["https://openalex.org/I60858718"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5040524956","display_name":"Jos\u00e9 Lu\u00eds Oliveira","orcid":"https://orcid.org/0000-0002-6672-6176"},"institutions":[{"id":"https://openalex.org/I60858718","display_name":"University of Aveiro","ror":"https://ror.org/00nt41z93","country_code":"PT","type":"education","lineage":["https://openalex.org/I60858718"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"Jos\u00e9 Luis Oliveira","raw_affiliation_strings":["IEETA, DETI, LASI, University of Aveiro, Aveiro, Portugal"],"raw_orcid":"https://orcid.org/0000-0002-6672-6176","affiliations":[{"raw_affiliation_string":"IEETA, DETI, LASI, University of Aveiro, Aveiro, Portugal","institution_ids":["https://openalex.org/I60858718"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5079044789"],"corresponding_institution_ids":["https://openalex.org/I60858718"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":1.8881,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.85832625,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":95},"biblio":{"volume":null,"issue":null,"first_page":"72","last_page":"85"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.9955000281333923,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.9955000281333923,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.9896000027656555,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9894999861717224,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.8173835277557373},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.79595547914505},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.5501797199249268},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.54787278175354},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.4619290232658386},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.45673537254333496},{"id":"https://openalex.org/keywords/human-genome","display_name":"Human genome","score":0.4290218949317932},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3842291533946991},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.10828208923339844},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.08080494403839111},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.08042445778846741}],"concepts":[{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.8173835277557373},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.79595547914505},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.5501797199249268},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.54787278175354},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4619290232658386},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.45673537254333496},{"id":"https://openalex.org/C197077220","wikidata":"https://www.wikidata.org/wiki/Q720988","display_name":"Human genome","level":4,"score":0.4290218949317932},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3842291533946991},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.10828208923339844},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.08080494403839111},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.08042445778846741},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/978-3-031-34960-7_6","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-031-34960-7_6","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Partnerships for the goals","id":"https://metadata.un.org/sdg/17","score":0.41999998688697815}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":27,"referenced_works":["https://openalex.org/W1019830208","https://openalex.org/W1919257374","https://openalex.org/W2002438422","https://openalex.org/W2042850624","https://openalex.org/W2092138236","https://openalex.org/W2097438318","https://openalex.org/W2108234281","https://openalex.org/W2119180969","https://openalex.org/W2121627353","https://openalex.org/W2124465358","https://openalex.org/W2131271579","https://openalex.org/W2141637710","https://openalex.org/W2149992227","https://openalex.org/W2161815151","https://openalex.org/W2168133698","https://openalex.org/W2432815617","https://openalex.org/W2546519000","https://openalex.org/W2802889540","https://openalex.org/W2889664156","https://openalex.org/W2901218091","https://openalex.org/W2950121474","https://openalex.org/W2951331911","https://openalex.org/W2951529834","https://openalex.org/W2953263404","https://openalex.org/W4210602415","https://openalex.org/W4225764874","https://openalex.org/W4283210431"],"related_works":["https://openalex.org/W3037187668","https://openalex.org/W2086525401","https://openalex.org/W2380685755","https://openalex.org/W2006735166","https://openalex.org/W1969895229","https://openalex.org/W2108497208","https://openalex.org/W2394962248","https://openalex.org/W2012254260","https://openalex.org/W2364503270","https://openalex.org/W2409743480"],"abstract_inverted_index":null,"counts_by_year":[{"year":2025,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
