{"id":"https://openalex.org/W4285107902","doi":"https://doi.org/10.1007/978-3-031-07802-6_38","title":"Can We Detect T Cell Receptors from Long-Read RNA-Seq Data?","display_name":"Can We Detect T Cell Receptors from Long-Read RNA-Seq Data?","publication_year":2022,"publication_date":"2022-01-01","ids":{"openalex":"https://openalex.org/W4285107902","doi":"https://doi.org/10.1007/978-3-031-07802-6_38"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-031-07802-6_38","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-031-07802-6_38","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5079620955","display_name":"Justyna Mika","orcid":"https://orcid.org/0000-0003-4615-784X"},"institutions":[{"id":"https://openalex.org/I119004910","display_name":"Silesian University of Technology","ror":"https://ror.org/02dyjk442","country_code":"PL","type":"education","lineage":["https://openalex.org/I119004910"]}],"countries":["PL"],"is_corresponding":true,"raw_author_name":"Justyna Mika","raw_affiliation_strings":["Department of Data Science and Engineering, Silesian University of Technology, Gliwice, Poland"],"raw_orcid":"https://orcid.org/0000-0003-4615-784X","affiliations":[{"raw_affiliation_string":"Department of Data Science and Engineering, Silesian University of Technology, Gliwice, Poland","institution_ids":["https://openalex.org/I119004910"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056275635","display_name":"Serge M. Cand\u00e9ias","orcid":"https://orcid.org/0000-0003-2257-5529"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I2738703131","display_name":"Commissariat \u00e0 l'\u00c9nergie Atomique et aux \u00c9nergies Alternatives","ror":"https://ror.org/00jjx8s55","country_code":"FR","type":"government","lineage":["https://openalex.org/I2738703131"]},{"id":"https://openalex.org/I3020098449","display_name":"CEA Grenoble","ror":"https://ror.org/02mg6n827","country_code":"FR","type":"government","lineage":["https://openalex.org/I2738703131","https://openalex.org/I3020098449"]},{"id":"https://openalex.org/I4210127966","display_name":"Laboratoire de Chimie et Biologie des M\u00e9taux","ror":"https://ror.org/02dd25k08","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I2738703131","https://openalex.org/I2738703131","https://openalex.org/I2738703131","https://openalex.org/I4210091409","https://openalex.org/I4210113668","https://openalex.org/I4210127966","https://openalex.org/I4210128300","https://openalex.org/I899635006"]},{"id":"https://openalex.org/I899635006","display_name":"Universit\u00e9 Grenoble Alpes","ror":"https://ror.org/02rx3b187","country_code":"FR","type":"education","lineage":["https://openalex.org/I899635006"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Serge M. Cand\u00e9ias","raw_affiliation_strings":["Laboratoire de Chimie Et Biologie Des M\u00e9taux, Universit\u00e9 Grenoble Alpes, CNRS, CEA, 38000, Grenoble, France"],"raw_orcid":"https://orcid.org/0000-0003-2257-5529","affiliations":[{"raw_affiliation_string":"Laboratoire de Chimie Et Biologie Des M\u00e9taux, Universit\u00e9 Grenoble Alpes, CNRS, CEA, 38000, Grenoble, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I2738703131","https://openalex.org/I3020098449","https://openalex.org/I4210127966","https://openalex.org/I899635006"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011581548","display_name":"Christophe Badie","orcid":"https://orcid.org/0000-0003-4572-5008"},"institutions":[{"id":"https://openalex.org/I4387153084","display_name":"UK Health Security Agency","ror":"https://ror.org/018h10037","country_code":"GB","type":"government","lineage":["https://openalex.org/I1311074006","https://openalex.org/I4387153084"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Christophe Badie","raw_affiliation_strings":["Cancer Mechanisms and Biomarkers Group, Radiation Effects Department, Radiation Chemical & Environmental Hazards, UK Health Security Agency, Didcot, UK"],"raw_orcid":"https://orcid.org/0000-0003-4572-5008","affiliations":[{"raw_affiliation_string":"Cancer Mechanisms and Biomarkers Group, Radiation Effects Department, Radiation Chemical & Environmental Hazards, UK Health Security Agency, Didcot, UK","institution_ids":["https://openalex.org/I4387153084"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5027451254","display_name":"Joanna Pola\u0144ska","orcid":"https://orcid.org/0000-0001-8004-9864"},"institutions":[{"id":"https://openalex.org/I119004910","display_name":"Silesian University of Technology","ror":"https://ror.org/02dyjk442","country_code":"PL","type":"education","lineage":["https://openalex.org/I119004910"]}],"countries":["PL"],"is_corresponding":true,"raw_author_name":"Joanna Polanska","raw_affiliation_strings":["Department of Data Science and Engineering, Silesian University of Technology, Gliwice, Poland"],"raw_orcid":"https://orcid.org/0000-0001-8004-9864","affiliations":[{"raw_affiliation_string":"Department of Data Science and Engineering, Silesian University of Technology, Gliwice, Poland","institution_ids":["https://openalex.org/I119004910"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5027451254","https://openalex.org/A5079620955"],"corresponding_institution_ids":["https://openalex.org/I119004910"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.13999108,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"450","last_page":"463"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10981","display_name":"Cytomegalovirus and herpesvirus research","score":0.9972000122070312,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10981","display_name":"Cytomegalovirus and herpesvirus research","score":0.9972000122070312,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10031","display_name":"T-cell and B-cell Immunology","score":0.994700014591217,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9902999997138977,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.6951690912246704},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6215417981147766},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.5258013606071472},{"id":"https://openalex.org/keywords/repertoire","display_name":"Repertoire","score":0.48865512013435364},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.45496517419815063},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.41990718245506287},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4185446500778198},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.41229328513145447},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2723483443260193},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.24869132041931152},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.22779697179794312}],"concepts":[{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.6951690912246704},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6215417981147766},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.5258013606071472},{"id":"https://openalex.org/C2778473898","wikidata":"https://www.wikidata.org/wiki/Q2145110","display_name":"Repertoire","level":2,"score":0.48865512013435364},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.45496517419815063},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.41990718245506287},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4185446500778198},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.41229328513145447},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2723483443260193},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.24869132041931152},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.22779697179794312},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C24890656","wikidata":"https://www.wikidata.org/wiki/Q82811","display_name":"Acoustics","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/978-3-031-07802-6_38","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-031-07802-6_38","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":25,"referenced_works":["https://openalex.org/W2029525307","https://openalex.org/W2089041106","https://openalex.org/W2094883326","https://openalex.org/W2108234281","https://openalex.org/W2119736800","https://openalex.org/W2136169373","https://openalex.org/W2146950091","https://openalex.org/W2179333422","https://openalex.org/W2180048932","https://openalex.org/W2295703274","https://openalex.org/W2460280360","https://openalex.org/W2509321831","https://openalex.org/W2524376318","https://openalex.org/W2575750030","https://openalex.org/W2749266189","https://openalex.org/W2789843538","https://openalex.org/W2802179555","https://openalex.org/W2951278111","https://openalex.org/W2995732066","https://openalex.org/W3025585922","https://openalex.org/W3029256690","https://openalex.org/W3036006967","https://openalex.org/W3048805029","https://openalex.org/W3119188679","https://openalex.org/W3161420752"],"related_works":["https://openalex.org/W3120300186","https://openalex.org/W2084831119","https://openalex.org/W4255048859","https://openalex.org/W4378635687","https://openalex.org/W2278124082","https://openalex.org/W2055491483","https://openalex.org/W2019758535","https://openalex.org/W2026305825","https://openalex.org/W2093107729","https://openalex.org/W2949171194"],"abstract_inverted_index":null,"counts_by_year":[],"updated_date":"2026-08-04T08:18:43.703281","created_date":"2025-10-10T00:00:00"}
