{"id":"https://openalex.org/W4285219033","doi":"https://doi.org/10.1007/978-3-031-07802-6_37","title":"KFinger: Capturing Overlaps Between Long Reads by\u00a0Using Lyndon Fingerprints","display_name":"KFinger: Capturing Overlaps Between Long Reads by\u00a0Using Lyndon Fingerprints","publication_year":2022,"publication_date":"2022-01-01","ids":{"openalex":"https://openalex.org/W4285219033","doi":"https://doi.org/10.1007/978-3-031-07802-6_37"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-031-07802-6_37","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-031-07802-6_37","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"http://hdl.handle.net/10281/388145","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5038691764","display_name":"Paola Bonizzoni","orcid":"https://orcid.org/0000-0001-7289-4988"},"institutions":[{"id":"https://openalex.org/I66752286","display_name":"University of Milano-Bicocca","ror":"https://ror.org/01ynf4891","country_code":"IT","type":"education","lineage":["https://openalex.org/I66752286"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Paola Bonizzoni","raw_affiliation_strings":["Dip.\u00a0di Informatica, Sistemistica e Comunicazione, University of Milano-Bicocca, viale Sarca 336, 20126, Milan, Italy"],"affiliations":[{"raw_affiliation_string":"Dip.\u00a0di Informatica, Sistemistica e Comunicazione, University of Milano-Bicocca, viale Sarca 336, 20126, Milan, Italy","institution_ids":["https://openalex.org/I66752286"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034083296","display_name":"Alessia Petescia","orcid":"https://orcid.org/0000-0002-9000-3664"},"institutions":[{"id":"https://openalex.org/I66752286","display_name":"University of Milano-Bicocca","ror":"https://ror.org/01ynf4891","country_code":"IT","type":"education","lineage":["https://openalex.org/I66752286"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Alessia Petescia","raw_affiliation_strings":["Dip.\u00a0di Informatica, Sistemistica e Comunicazione, University of Milano-Bicocca, viale Sarca 336, 20126, Milan, Italy"],"affiliations":[{"raw_affiliation_string":"Dip.\u00a0di Informatica, Sistemistica e Comunicazione, University of Milano-Bicocca, viale Sarca 336, 20126, Milan, Italy","institution_ids":["https://openalex.org/I66752286"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079127373","display_name":"Yuri Pirola","orcid":"https://orcid.org/0000-0002-8479-7592"},"institutions":[{"id":"https://openalex.org/I66752286","display_name":"University of Milano-Bicocca","ror":"https://ror.org/01ynf4891","country_code":"IT","type":"education","lineage":["https://openalex.org/I66752286"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Yuri Pirola","raw_affiliation_strings":["Dip.\u00a0di Informatica, Sistemistica e Comunicazione, University of Milano-Bicocca, viale Sarca 336, 20126, Milan, Italy"],"affiliations":[{"raw_affiliation_string":"Dip.\u00a0di Informatica, Sistemistica e Comunicazione, University of Milano-Bicocca, viale Sarca 336, 20126, Milan, Italy","institution_ids":["https://openalex.org/I66752286"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086249420","display_name":"Raffaella Rizzi","orcid":"https://orcid.org/0000-0001-9730-7516"},"institutions":[{"id":"https://openalex.org/I66752286","display_name":"University of Milano-Bicocca","ror":"https://ror.org/01ynf4891","country_code":"IT","type":"education","lineage":["https://openalex.org/I66752286"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Raffaella Rizzi","raw_affiliation_strings":["Dip.\u00a0di Informatica, Sistemistica e Comunicazione, University of Milano-Bicocca, viale Sarca 336, 20126, Milan, Italy"],"affiliations":[{"raw_affiliation_string":"Dip.\u00a0di Informatica, Sistemistica e Comunicazione, University of Milano-Bicocca, viale Sarca 336, 20126, Milan, Italy","institution_ids":["https://openalex.org/I66752286"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009847199","display_name":"Rocco Zaccagnino","orcid":"https://orcid.org/0000-0002-9089-5957"},"institutions":[{"id":"https://openalex.org/I131729948","display_name":"University of Salerno","ror":"https://ror.org/0192m2k53","country_code":"IT","type":"education","lineage":["https://openalex.org/I131729948"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Rocco Zaccagnino","raw_affiliation_strings":["Dip.\u00a0di Informatica, University of Salerno, via Giovanni Paolo II 132, 84084, Fisciano, Italy"],"affiliations":[{"raw_affiliation_string":"Dip.\u00a0di Informatica, University of Salerno, via Giovanni Paolo II 132, 84084, Fisciano, Italy","institution_ids":["https://openalex.org/I131729948"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5085208855","display_name":"Rosalba Zizza","orcid":"https://orcid.org/0000-0001-9144-3074"},"institutions":[{"id":"https://openalex.org/I131729948","display_name":"University of Salerno","ror":"https://ror.org/0192m2k53","country_code":"IT","type":"education","lineage":["https://openalex.org/I131729948"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Rosalba Zizza","raw_affiliation_strings":["Dip.\u00a0di Informatica, University of Salerno, via Giovanni Paolo II 132, 84084, Fisciano, Italy"],"affiliations":[{"raw_affiliation_string":"Dip.\u00a0di Informatica, University of Salerno, via Giovanni Paolo II 132, 84084, Fisciano, Italy","institution_ids":["https://openalex.org/I131729948"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5038691764"],"corresponding_institution_ids":["https://openalex.org/I66752286"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":0.9963,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.73269814,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":95},"biblio":{"volume":null,"issue":null,"first_page":"436","last_page":"449"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9965000152587891,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6592177152633667},{"id":"https://openalex.org/keywords/fingerprint","display_name":"Fingerprint (computing)","score":0.571074366569519},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5574533939361572},{"id":"https://openalex.org/keywords/k-mer","display_name":"k-mer","score":0.4448278248310089},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.44346439838409424},{"id":"https://openalex.org/keywords/sequence-assembly","display_name":"Sequence assembly","score":0.4332853853702545},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3820500373840332},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.37994712591171265},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.35587918758392334},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.3306334614753723},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.29366058111190796},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.2780078947544098},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.21771541237831116},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.17796051502227783},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.15987160801887512},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.08639320731163025},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.06025850772857666}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6592177152633667},{"id":"https://openalex.org/C2777826928","wikidata":"https://www.wikidata.org/wiki/Q3745713","display_name":"Fingerprint (computing)","level":2,"score":0.571074366569519},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5574533939361572},{"id":"https://openalex.org/C2279292","wikidata":"https://www.wikidata.org/wiki/Q6322851","display_name":"k-mer","level":4,"score":0.4448278248310089},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.44346439838409424},{"id":"https://openalex.org/C18949551","wikidata":"https://www.wikidata.org/wiki/Q740578","display_name":"Sequence assembly","level":5,"score":0.4332853853702545},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3820500373840332},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.37994712591171265},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.35587918758392334},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.3306334614753723},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.29366058111190796},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.2780078947544098},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.21771541237831116},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.17796051502227783},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.15987160801887512},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.08639320731163025},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.06025850772857666},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1007/978-3-031-07802-6_37","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-031-07802-6_37","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},{"id":"pmh:oai:boa.unimib.it:10281/388145","is_oa":true,"landing_page_url":"http://hdl.handle.net/10281/388145","pdf_url":null,"source":{"id":"https://openalex.org/S4306401259","display_name":"BOA (University of Milano-Bicocca)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I66752286","host_organization_name":"University of Milano-Bicocca","host_organization_lineage":["https://openalex.org/I66752286"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/conferenceObject"}],"best_oa_location":{"id":"pmh:oai:boa.unimib.it:10281/388145","is_oa":true,"landing_page_url":"http://hdl.handle.net/10281/388145","pdf_url":null,"source":{"id":"https://openalex.org/S4306401259","display_name":"BOA (University of Milano-Bicocca)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I66752286","host_organization_name":"University of Milano-Bicocca","host_organization_lineage":["https://openalex.org/I66752286"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/conferenceObject"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":18,"referenced_works":["https://openalex.org/W1519765314","https://openalex.org/W1579534339","https://openalex.org/W1987760161","https://openalex.org/W2049646746","https://openalex.org/W2132394658","https://openalex.org/W2136651963","https://openalex.org/W2313966519","https://openalex.org/W2515836512","https://openalex.org/W2617900143","https://openalex.org/W2789843538","https://openalex.org/W2950354111","https://openalex.org/W2950609999","https://openalex.org/W2952609831","https://openalex.org/W2955167895","https://openalex.org/W2989097563","https://openalex.org/W3009111940","https://openalex.org/W3103389278","https://openalex.org/W3171819403"],"related_works":["https://openalex.org/W2484133401","https://openalex.org/W2115501618","https://openalex.org/W2127768708","https://openalex.org/W2013652688","https://openalex.org/W3215016332","https://openalex.org/W2985880923","https://openalex.org/W2061214760","https://openalex.org/W2159998739","https://openalex.org/W2268029186","https://openalex.org/W2165847428"],"abstract_inverted_index":null,"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2022,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
