{"id":"https://openalex.org/W4285134374","doi":"https://doi.org/10.1007/978-3-031-07802-6_17","title":"A 3D Multicellular Simulation Layer for the Synthetic Biology CAD Infobiotics Workbench Suite","display_name":"A 3D Multicellular Simulation Layer for the Synthetic Biology CAD Infobiotics Workbench Suite","publication_year":2022,"publication_date":"2022-01-01","ids":{"openalex":"https://openalex.org/W4285134374","doi":"https://doi.org/10.1007/978-3-031-07802-6_17"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-031-07802-6_17","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-031-07802-6_17","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5005530648","display_name":"Richard Oliver Matzko","orcid":"https://orcid.org/0009-0008-4829-3961"},"institutions":[{"id":"https://openalex.org/I139894009","display_name":"University of Bradford","ror":"https://ror.org/00vs8d940","country_code":"GB","type":"education","lineage":["https://openalex.org/I139894009"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Richard Oliver Matzko","raw_affiliation_strings":["Department of Computer Science, University of Bradford, Bradford, UK"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Bradford, Bradford, UK","institution_ids":["https://openalex.org/I139894009"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041614034","display_name":"Lauren\u0163iu Mierl\u0103","orcid":null},"institutions":[{"id":"https://openalex.org/I139894009","display_name":"University of Bradford","ror":"https://ror.org/00vs8d940","country_code":"GB","type":"education","lineage":["https://openalex.org/I139894009"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Laurentiu Mierla","raw_affiliation_strings":["Department of Computer Science, University of Bradford, Bradford, UK"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Bradford, Bradford, UK","institution_ids":["https://openalex.org/I139894009"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5037997843","display_name":"Savas Konur","orcid":"https://orcid.org/0000-0002-0642-9452"},"institutions":[{"id":"https://openalex.org/I139894009","display_name":"University of Bradford","ror":"https://ror.org/00vs8d940","country_code":"GB","type":"education","lineage":["https://openalex.org/I139894009"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Savas Konur","raw_affiliation_strings":["Department of Computer Science, University of Bradford, Bradford, UK"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Bradford, Bradford, UK","institution_ids":["https://openalex.org/I139894009"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5005530648"],"corresponding_institution_ids":["https://openalex.org/I139894009"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":0.9963,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.72602858,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"193","last_page":"207"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9897000193595886,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9879000186920166,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/workbench","display_name":"Workbench","score":0.8450484275817871},{"id":"https://openalex.org/keywords/multicellular-organism","display_name":"Multicellular organism","score":0.8260389566421509},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7250366806983948},{"id":"https://openalex.org/keywords/in-silico","display_name":"In silico","score":0.5467513799667358},{"id":"https://openalex.org/keywords/variety","display_name":"Variety (cybernetics)","score":0.5272428393363953},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5150870680809021},{"id":"https://openalex.org/keywords/multiphysics","display_name":"Multiphysics","score":0.4533081650733948},{"id":"https://openalex.org/keywords/construct","display_name":"Construct (python library)","score":0.4318455457687378},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.42835482954978943},{"id":"https://openalex.org/keywords/distributed-computing","display_name":"Distributed computing","score":0.37403303384780884},{"id":"https://openalex.org/keywords/computer-architecture","display_name":"Computer architecture","score":0.36380141973495483},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.34592199325561523},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.2112513780593872},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.19608911871910095},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.1858307123184204},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.11068910360336304}],"concepts":[{"id":"https://openalex.org/C2779145975","wikidata":"https://www.wikidata.org/wiki/Q347690","display_name":"Workbench","level":3,"score":0.8450484275817871},{"id":"https://openalex.org/C74318829","wikidata":"https://www.wikidata.org/wiki/Q36458","display_name":"Multicellular organism","level":3,"score":0.8260389566421509},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7250366806983948},{"id":"https://openalex.org/C2775905019","wikidata":"https://www.wikidata.org/wiki/Q192572","display_name":"In silico","level":3,"score":0.5467513799667358},{"id":"https://openalex.org/C136197465","wikidata":"https://www.wikidata.org/wiki/Q1729295","display_name":"Variety (cybernetics)","level":2,"score":0.5272428393363953},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5150870680809021},{"id":"https://openalex.org/C46435376","wikidata":"https://www.wikidata.org/wiki/Q1829750","display_name":"Multiphysics","level":3,"score":0.4533081650733948},{"id":"https://openalex.org/C2780801425","wikidata":"https://www.wikidata.org/wiki/Q5164392","display_name":"Construct (python library)","level":2,"score":0.4318455457687378},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.42835482954978943},{"id":"https://openalex.org/C120314980","wikidata":"https://www.wikidata.org/wiki/Q180634","display_name":"Distributed computing","level":1,"score":0.37403303384780884},{"id":"https://openalex.org/C118524514","wikidata":"https://www.wikidata.org/wiki/Q173212","display_name":"Computer architecture","level":1,"score":0.36380141973495483},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.34592199325561523},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.2112513780593872},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.19608911871910095},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.1858307123184204},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.11068910360336304},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C135628077","wikidata":"https://www.wikidata.org/wiki/Q220184","display_name":"Finite element method","level":2,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C66938386","wikidata":"https://www.wikidata.org/wiki/Q633538","display_name":"Structural engineering","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/978-3-031-07802-6_17","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-031-07802-6_17","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.4699999988079071,"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure"}],"awards":[{"id":"https://openalex.org/G7965046614","display_name":null,"funder_award_id":"EP/R043787/1","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"}],"funders":[{"id":"https://openalex.org/F4320334627","display_name":"Engineering and Physical Sciences Research Council","ror":"https://ror.org/0439y7842"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":40,"referenced_works":["https://openalex.org/W969639195","https://openalex.org/W1622620984","https://openalex.org/W1955228981","https://openalex.org/W1989952069","https://openalex.org/W2022224538","https://openalex.org/W2077968630","https://openalex.org/W2087058693","https://openalex.org/W2087344433","https://openalex.org/W2102653059","https://openalex.org/W2102966010","https://openalex.org/W2103256803","https://openalex.org/W2105661204","https://openalex.org/W2117899937","https://openalex.org/W2124236793","https://openalex.org/W2154289334","https://openalex.org/W2160135160","https://openalex.org/W2170405129","https://openalex.org/W2216895152","https://openalex.org/W2256248976","https://openalex.org/W2272546316","https://openalex.org/W2273569416","https://openalex.org/W2317512200","https://openalex.org/W2403795281","https://openalex.org/W2434315415","https://openalex.org/W2582477723","https://openalex.org/W2592092817","https://openalex.org/W2599641104","https://openalex.org/W2611923886","https://openalex.org/W2623066589","https://openalex.org/W2806968040","https://openalex.org/W2810755205","https://openalex.org/W2905127429","https://openalex.org/W2949797623","https://openalex.org/W2951957673","https://openalex.org/W2996352770","https://openalex.org/W3014396133","https://openalex.org/W3028922180","https://openalex.org/W3080133182","https://openalex.org/W3114070928","https://openalex.org/W3187481520"],"related_works":["https://openalex.org/W2084426624","https://openalex.org/W3026055904","https://openalex.org/W2388509490","https://openalex.org/W2792869497","https://openalex.org/W2109648960","https://openalex.org/W4312133600","https://openalex.org/W2166015079","https://openalex.org/W2050384624","https://openalex.org/W2776888796","https://openalex.org/W2023255625"],"abstract_inverted_index":null,"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
