{"id":"https://openalex.org/W2974687579","doi":"https://doi.org/10.1007/978-3-030-31304-3_24","title":"Wasserstein Distances for Estimating Parameters in Stochastic Reaction Networks","display_name":"Wasserstein Distances for Estimating Parameters in Stochastic Reaction Networks","publication_year":2019,"publication_date":"2019-01-01","ids":{"openalex":"https://openalex.org/W2974687579","doi":"https://doi.org/10.1007/978-3-030-31304-3_24","mag":"2974687579"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-030-31304-3_24","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-030-31304-3_24","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.research.ed.ac.uk/en/publications/c8f3118d-bae7-4627-866d-2b88a8ae0209","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5007883552","display_name":"Kaan \u00d6cal","orcid":"https://orcid.org/0000-0002-8528-6858"},"institutions":[{"id":"https://openalex.org/I98677209","display_name":"University of Edinburgh","ror":"https://ror.org/01nrxwf90","country_code":"GB","type":"education","lineage":["https://openalex.org/I98677209"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Kaan \u00d6cal","raw_affiliation_strings":["School of Biological Sciences, University of Edinburgh, Edinburgh, UK","School of Informatics, University of Edinburgh, Edinburgh, UK"],"affiliations":[{"raw_affiliation_string":"School of Biological Sciences, University of Edinburgh, Edinburgh, UK","institution_ids":["https://openalex.org/I98677209"]},{"raw_affiliation_string":"School of Informatics, University of Edinburgh, Edinburgh, UK","institution_ids":["https://openalex.org/I98677209"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029788536","display_name":"Ramon Grima","orcid":"https://orcid.org/0000-0002-1266-8169"},"institutions":[{"id":"https://openalex.org/I98677209","display_name":"University of Edinburgh","ror":"https://ror.org/01nrxwf90","country_code":"GB","type":"education","lineage":["https://openalex.org/I98677209"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Ramon Grima","raw_affiliation_strings":["School of Biological Sciences, University of Edinburgh, Edinburgh, UK"],"affiliations":[{"raw_affiliation_string":"School of Biological Sciences, University of Edinburgh, Edinburgh, UK","institution_ids":["https://openalex.org/I98677209"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5017674487","display_name":"Guido Sanguinetti","orcid":"https://orcid.org/0000-0002-6663-8336"},"institutions":[{"id":"https://openalex.org/I98677209","display_name":"University of Edinburgh","ror":"https://ror.org/01nrxwf90","country_code":"GB","type":"education","lineage":["https://openalex.org/I98677209"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Guido Sanguinetti","raw_affiliation_strings":["School of Informatics, University of Edinburgh, Edinburgh, UK","University of Edinburgh, Edinburgh, UK"],"affiliations":[{"raw_affiliation_string":"School of Informatics, University of Edinburgh, Edinburgh, UK","institution_ids":["https://openalex.org/I98677209"]},{"raw_affiliation_string":"University of Edinburgh, Edinburgh, UK","institution_ids":["https://openalex.org/I98677209"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5007883552"],"corresponding_institution_ids":["https://openalex.org/I98677209"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":0.3234,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.61052364,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":95},"biblio":{"volume":null,"issue":null,"first_page":"347","last_page":"351"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10928","display_name":"Probabilistic and Robust Engineering Design","score":0.9763000011444092,"subfield":{"id":"https://openalex.org/subfields/1804","display_name":"Statistics, Probability and Uncertainty"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10581","display_name":"Neural dynamics and brain function","score":0.9599999785423279,"subfield":{"id":"https://openalex.org/subfields/2805","display_name":"Cognitive Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.760349452495575},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.7041394710540771},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.6126906275749207},{"id":"https://openalex.org/keywords/stochastic-modelling","display_name":"Stochastic modelling","score":0.5193951725959778},{"id":"https://openalex.org/keywords/stochastic-process","display_name":"Stochastic process","score":0.5072872042655945},{"id":"https://openalex.org/keywords/variety","display_name":"Variety (cybernetics)","score":0.4380509853363037},{"id":"https://openalex.org/keywords/gene-regulatory-network","display_name":"Gene regulatory network","score":0.4348596930503845},{"id":"https://openalex.org/keywords/biological-network","display_name":"Biological network","score":0.42981216311454773},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.40858232975006104},{"id":"https://openalex.org/keywords/biological-system","display_name":"Biological system","score":0.3520316481590271},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.22390925884246826},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.2004885971546173},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.16556093096733093},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1120833158493042}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.760349452495575},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.7041394710540771},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.6126906275749207},{"id":"https://openalex.org/C127491075","wikidata":"https://www.wikidata.org/wiki/Q7617825","display_name":"Stochastic modelling","level":2,"score":0.5193951725959778},{"id":"https://openalex.org/C8272713","wikidata":"https://www.wikidata.org/wiki/Q176737","display_name":"Stochastic process","level":2,"score":0.5072872042655945},{"id":"https://openalex.org/C136197465","wikidata":"https://www.wikidata.org/wiki/Q1729295","display_name":"Variety (cybernetics)","level":2,"score":0.4380509853363037},{"id":"https://openalex.org/C67339327","wikidata":"https://www.wikidata.org/wiki/Q1502576","display_name":"Gene regulatory network","level":4,"score":0.4348596930503845},{"id":"https://openalex.org/C28225019","wikidata":"https://www.wikidata.org/wiki/Q4915005","display_name":"Biological network","level":2,"score":0.42981216311454773},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.40858232975006104},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.3520316481590271},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.22390925884246826},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.2004885971546173},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.16556093096733093},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1120833158493042},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1007/978-3-030-31304-3_24","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-030-31304-3_24","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},{"id":"pmh:oai:pure.ed.ac.uk:openaire/c8f3118d-bae7-4627-866d-2b88a8ae0209","is_oa":true,"landing_page_url":"https://www.research.ed.ac.uk/en/publications/c8f3118d-bae7-4627-866d-2b88a8ae0209","pdf_url":null,"source":{"id":"https://openalex.org/S4406922455","display_name":"Edinburgh Research Explorer","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"\u00d6cal, K, Grima, R & Sanguinetti, G 2019, Wasserstein distances for estimating parameters in stochastic reaction networks. in L Bortolussi & G Sanguinetti (eds), Computational Methods in Systems Biology - 17th International Conference, CMSB 2019, Proceedings. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), vol. 11773 LNBI, pp. 347-351, 17th International Conference on Computational Methods in Systems Biology, CMSB 2019, Trieste, Italy, 18/09/19. https://doi.org/10.1007/978-3-030-31304-3_24","raw_type":"contributionToPeriodical"},{"id":"pmh:oai:pure.ed.ac.uk:publications/c8f3118d-bae7-4627-866d-2b88a8ae0209","is_oa":false,"landing_page_url":"https://www.research.ed.ac.uk/portal/en/publications/wasserstein-distances-for-estimating-parameters-in-stochastic-reaction-networks(c8f3118d-bae7-4627-866d-2b88a8ae0209).html","pdf_url":null,"source":{"id":"https://openalex.org/S4406922455","display_name":"Edinburgh Research Explorer","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":""}],"best_oa_location":{"id":"pmh:oai:pure.ed.ac.uk:openaire/c8f3118d-bae7-4627-866d-2b88a8ae0209","is_oa":true,"landing_page_url":"https://www.research.ed.ac.uk/en/publications/c8f3118d-bae7-4627-866d-2b88a8ae0209","pdf_url":null,"source":{"id":"https://openalex.org/S4406922455","display_name":"Edinburgh Research Explorer","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"\u00d6cal, K, Grima, R & Sanguinetti, G 2019, Wasserstein distances for estimating parameters in stochastic reaction networks. in L Bortolussi & G Sanguinetti (eds), Computational Methods in Systems Biology - 17th International Conference, CMSB 2019, Proceedings. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), vol. 11773 LNBI, pp. 347-351, 17th International Conference on Computational Methods in Systems Biology, CMSB 2019, Trieste, Italy, 18/09/19. https://doi.org/10.1007/978-3-030-31304-3_24","raw_type":"contributionToPeriodical"},"sustainable_development_goals":[{"display_name":"Life below water","score":0.6399999856948853,"id":"https://metadata.un.org/sdg/14"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":28,"referenced_works":["https://openalex.org/W1511164163","https://openalex.org/W1921421686","https://openalex.org/W1968856189","https://openalex.org/W1974475129","https://openalex.org/W1978182054","https://openalex.org/W1987129107","https://openalex.org/W1997377511","https://openalex.org/W2042321087","https://openalex.org/W2043831708","https://openalex.org/W2047453261","https://openalex.org/W2096705138","https://openalex.org/W2102787760","https://openalex.org/W2136088963","https://openalex.org/W2138163236","https://openalex.org/W2171280873","https://openalex.org/W2478346132","https://openalex.org/W2500539065","https://openalex.org/W2762968607","https://openalex.org/W2793477525","https://openalex.org/W2803889050","https://openalex.org/W2811137963","https://openalex.org/W2887216660","https://openalex.org/W2888658056","https://openalex.org/W2932160358","https://openalex.org/W3101653330","https://openalex.org/W3103757230","https://openalex.org/W4206471589","https://openalex.org/W4233762729"],"related_works":["https://openalex.org/W2560421304","https://openalex.org/W2950199998","https://openalex.org/W2951387065","https://openalex.org/W4385727351","https://openalex.org/W2112534124","https://openalex.org/W2130939068","https://openalex.org/W3163717165","https://openalex.org/W2114466827","https://openalex.org/W2129949791","https://openalex.org/W2791736663"],"abstract_inverted_index":null,"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2019,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}