{"id":"https://openalex.org/W2405638142","doi":"https://doi.org/10.1007/11880646_5","title":"Qualitative Petri Net Modelling of Genetic Networks","display_name":"Qualitative Petri Net Modelling of Genetic Networks","publication_year":2006,"publication_date":"2006-01-01","ids":{"openalex":"https://openalex.org/W2405638142","doi":"https://doi.org/10.1007/11880646_5","mag":"2405638142"},"language":"en","primary_location":{"id":"doi:10.1007/11880646_5","is_oa":false,"landing_page_url":"https://doi.org/10.1007/11880646_5","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5038231285","display_name":"Claudine Chaouiya","orcid":"https://orcid.org/0000-0003-2350-0756"},"institutions":[{"id":"https://openalex.org/I4210120427","display_name":"Institut de Biologie du D\u00e9veloppement Marseille","ror":"https://ror.org/02me5cy06","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I21491767","https://openalex.org/I4210096427","https://openalex.org/I4210120427"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Claudine Chaouiya","raw_affiliation_strings":["Institut de biologie du D\u00e9veloppement de Marseille Luminy, UMR 6216, Case 907 \u2013 Luminy, 13288 Cedex 9, Marseille, France"],"affiliations":[{"raw_affiliation_string":"Institut de biologie du D\u00e9veloppement de Marseille Luminy, UMR 6216, Case 907 \u2013 Luminy, 13288 Cedex 9, Marseille, France","institution_ids":["https://openalex.org/I4210120427"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080878366","display_name":"\u00c9lisabeth R\u00e9my","orcid":"https://orcid.org/0000-0001-8560-8178"},"institutions":[{"id":"https://openalex.org/I4210138206","display_name":"Institut de Math\u00e9matiques de Marseille","ror":"https://ror.org/042h2y225","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I21491767","https://openalex.org/I4210138206","https://openalex.org/I4210141950","https://openalex.org/I4210142724"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Elisabeth Remy","raw_affiliation_strings":["Institut de Math\u00e9matiques de Luminy, UMR 6206, case 907 \u2013 Luminy, 13288 Cedex 9, Marseille, France"],"affiliations":[{"raw_affiliation_string":"Institut de Math\u00e9matiques de Luminy, UMR 6206, case 907 \u2013 Luminy, 13288 Cedex 9, Marseille, France","institution_ids":["https://openalex.org/I4210138206"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5081933836","display_name":"Denis Thieffry","orcid":"https://orcid.org/0000-0003-0271-1757"},"institutions":[{"id":"https://openalex.org/I4210120427","display_name":"Institut de Biologie du D\u00e9veloppement Marseille","ror":"https://ror.org/02me5cy06","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I21491767","https://openalex.org/I4210096427","https://openalex.org/I4210120427"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Denis Thieffry","raw_affiliation_strings":["Institut de biologie du D\u00e9veloppement de Marseille Luminy, UMR 6216, Case 907 \u2013 Luminy, 13288 Cedex 9, Marseille, France"],"affiliations":[{"raw_affiliation_string":"Institut de biologie du D\u00e9veloppement de Marseille Luminy, UMR 6216, Case 907 \u2013 Luminy, 13288 Cedex 9, Marseille, France","institution_ids":["https://openalex.org/I4210120427"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5038231285"],"corresponding_institution_ids":["https://openalex.org/I4210120427"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":4.3017,"has_fulltext":false,"cited_by_count":37,"citation_normalized_percentile":{"value":0.94136279,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":null,"issue":null,"first_page":"95","last_page":"112"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9937999844551086,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9927999973297119,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/petri-net","display_name":"Petri net","score":0.8701311349868774},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6380048990249634},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.5752245187759399},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.572664201259613},{"id":"https://openalex.org/keywords/grasp","display_name":"GRASP","score":0.5514314770698547},{"id":"https://openalex.org/keywords/stochastic-petri-net","display_name":"Stochastic Petri net","score":0.5210508704185486},{"id":"https://openalex.org/keywords/boolean-network","display_name":"Boolean network","score":0.5161003470420837},{"id":"https://openalex.org/keywords/gene-regulatory-network","display_name":"Gene regulatory network","score":0.489717036485672},{"id":"https://openalex.org/keywords/translation","display_name":"Translation (biology)","score":0.4483286142349243},{"id":"https://openalex.org/keywords/process-architecture","display_name":"Process architecture","score":0.41835179924964905},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3454795479774475},{"id":"https://openalex.org/keywords/distributed-computing","display_name":"Distributed computing","score":0.3434879779815674},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.18852394819259644},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.18194681406021118},{"id":"https://openalex.org/keywords/boolean-function","display_name":"Boolean function","score":0.14503124356269836}],"concepts":[{"id":"https://openalex.org/C38677869","wikidata":"https://www.wikidata.org/wiki/Q724168","display_name":"Petri net","level":2,"score":0.8701311349868774},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6380048990249634},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.5752245187759399},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.572664201259613},{"id":"https://openalex.org/C171268870","wikidata":"https://www.wikidata.org/wiki/Q1486676","display_name":"GRASP","level":2,"score":0.5514314770698547},{"id":"https://openalex.org/C197551870","wikidata":"https://www.wikidata.org/wiki/Q7617809","display_name":"Stochastic Petri net","level":3,"score":0.5210508704185486},{"id":"https://openalex.org/C134444547","wikidata":"https://www.wikidata.org/wiki/Q585230","display_name":"Boolean network","level":3,"score":0.5161003470420837},{"id":"https://openalex.org/C67339327","wikidata":"https://www.wikidata.org/wiki/Q1502576","display_name":"Gene regulatory network","level":4,"score":0.489717036485672},{"id":"https://openalex.org/C149364088","wikidata":"https://www.wikidata.org/wiki/Q185917","display_name":"Translation (biology)","level":4,"score":0.4483286142349243},{"id":"https://openalex.org/C136155141","wikidata":"https://www.wikidata.org/wiki/Q7247260","display_name":"Process architecture","level":3,"score":0.41835179924964905},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3454795479774475},{"id":"https://openalex.org/C120314980","wikidata":"https://www.wikidata.org/wiki/Q180634","display_name":"Distributed computing","level":1,"score":0.3434879779815674},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.18852394819259644},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.18194681406021118},{"id":"https://openalex.org/C187455244","wikidata":"https://www.wikidata.org/wiki/Q942353","display_name":"Boolean function","level":2,"score":0.14503124356269836},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C105580179","wikidata":"https://www.wikidata.org/wiki/Q188928","display_name":"Messenger RNA","level":3,"score":0.0},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1007/11880646_5","is_oa":false,"landing_page_url":"https://doi.org/10.1007/11880646_5","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.105.1808","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.105.1808","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.inrialpes.fr/schoolleshouches07/pres/Chaouiya_LNCS_2006.pdf","raw_type":"text"},{"id":"pmh:oai:HAL:hal-00310988v1","is_oa":false,"landing_page_url":"https://hal.science/hal-00310988","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"LNBI Transactions on Computational Systems Biology, 2006, 6, pp.95-112","raw_type":"Journal articles"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.47999998927116394,"display_name":"Partnerships for the goals","id":"https://metadata.un.org/sdg/17"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":27,"referenced_works":["https://openalex.org/W154417448","https://openalex.org/W1519328443","https://openalex.org/W1530386720","https://openalex.org/W1563476066","https://openalex.org/W1587845087","https://openalex.org/W1768076797","https://openalex.org/W1776634096","https://openalex.org/W1975954590","https://openalex.org/W1989284002","https://openalex.org/W1996109622","https://openalex.org/W2005486846","https://openalex.org/W2031369606","https://openalex.org/W2058221907","https://openalex.org/W2080267935","https://openalex.org/W2088488298","https://openalex.org/W2098739408","https://openalex.org/W2100486049","https://openalex.org/W2104855667","https://openalex.org/W2108654339","https://openalex.org/W2112332161","https://openalex.org/W2124082948","https://openalex.org/W2146367686","https://openalex.org/W2160196028","https://openalex.org/W2161621619","https://openalex.org/W2495597431","https://openalex.org/W2507030177","https://openalex.org/W4299438414"],"related_works":["https://openalex.org/W1543378523","https://openalex.org/W2257573499","https://openalex.org/W2381491984","https://openalex.org/W2064254377","https://openalex.org/W2901841247","https://openalex.org/W2148229336","https://openalex.org/W1491709828","https://openalex.org/W2001922003","https://openalex.org/W4244333532","https://openalex.org/W117466158"],"abstract_inverted_index":null,"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2021,"cited_by_count":2},{"year":2019,"cited_by_count":6},{"year":2018,"cited_by_count":3},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":3},{"year":2012,"cited_by_count":1}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
