{"id":"https://openalex.org/W1570429932","doi":"https://doi.org/10.1007/11851561_25","title":"Rapid ab initio RNA Folding Including Pseudoknots Via Graph Tree Decomposition","display_name":"Rapid ab initio RNA Folding Including Pseudoknots Via Graph Tree Decomposition","publication_year":2006,"publication_date":"2006-01-01","ids":{"openalex":"https://openalex.org/W1570429932","doi":"https://doi.org/10.1007/11851561_25","mag":"1570429932"},"language":"en","primary_location":{"id":"doi:10.1007/11851561_25","is_oa":false,"landing_page_url":"https://doi.org/10.1007/11851561_25","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5076081661","display_name":"Jizhen Zhao","orcid":null},"institutions":[{"id":"https://openalex.org/I165733156","display_name":"University of Georgia","ror":"https://ror.org/00te3t702","country_code":"US","type":"education","lineage":["https://openalex.org/I165733156"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Jizhen Zhao","raw_affiliation_strings":["Department of Computer Science, University of Georgia, Athens, GA, 30602, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Georgia, Athens, GA, 30602, USA","institution_ids":["https://openalex.org/I165733156"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081591724","display_name":"Russell L. Malmberg","orcid":"https://orcid.org/0000-0002-7448-5034"},"institutions":[{"id":"https://openalex.org/I165733156","display_name":"University of Georgia","ror":"https://ror.org/00te3t702","country_code":"US","type":"education","lineage":["https://openalex.org/I165733156"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Russell L. Malmberg","raw_affiliation_strings":["Department of Plant Biology, University of Georgia, Athens, GA, 30602, USA"],"affiliations":[{"raw_affiliation_string":"Department of Plant Biology, University of Georgia, Athens, GA, 30602, USA","institution_ids":["https://openalex.org/I165733156"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5012513857","display_name":"Liming Cai","orcid":"https://orcid.org/0000-0002-8982-2435"},"institutions":[{"id":"https://openalex.org/I165733156","display_name":"University of Georgia","ror":"https://ror.org/00te3t702","country_code":"US","type":"education","lineage":["https://openalex.org/I165733156"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Liming Cai","raw_affiliation_strings":["Department of Computer Science, University of Georgia, Athens, GA, 30602, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Georgia, Athens, GA, 30602, USA","institution_ids":["https://openalex.org/I165733156"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5076081661"],"corresponding_institution_ids":["https://openalex.org/I165733156"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":3.6872,"has_fulltext":false,"cited_by_count":20,"citation_normalized_percentile":{"value":0.92739381,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":null,"issue":null,"first_page":"262","last_page":"273"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.996999979019165,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.9950000047683716,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6533161401748657},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.5145673155784607},{"id":"https://openalex.org/keywords/time-complexity","display_name":"Time complexity","score":0.5030683875083923},{"id":"https://openalex.org/keywords/heuristic","display_name":"Heuristic","score":0.4793753921985626},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.4788544178009033},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.45083367824554443},{"id":"https://openalex.org/keywords/tree","display_name":"Tree (set theory)","score":0.45040163397789},{"id":"https://openalex.org/keywords/dynamic-programming","display_name":"Dynamic programming","score":0.4480816721916199},{"id":"https://openalex.org/keywords/folding","display_name":"Folding (DSP implementation)","score":0.41640424728393555},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.28276681900024414},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.2776016592979431},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.10009190440177917}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6533161401748657},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.5145673155784607},{"id":"https://openalex.org/C311688","wikidata":"https://www.wikidata.org/wiki/Q2393193","display_name":"Time complexity","level":2,"score":0.5030683875083923},{"id":"https://openalex.org/C173801870","wikidata":"https://www.wikidata.org/wiki/Q201413","display_name":"Heuristic","level":2,"score":0.4793753921985626},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.4788544178009033},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.45083367824554443},{"id":"https://openalex.org/C113174947","wikidata":"https://www.wikidata.org/wiki/Q2859736","display_name":"Tree (set theory)","level":2,"score":0.45040163397789},{"id":"https://openalex.org/C37404715","wikidata":"https://www.wikidata.org/wiki/Q380679","display_name":"Dynamic programming","level":2,"score":0.4480816721916199},{"id":"https://openalex.org/C2776545253","wikidata":"https://www.wikidata.org/wiki/Q5464292","display_name":"Folding (DSP implementation)","level":2,"score":0.41640424728393555},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.28276681900024414},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.2776016592979431},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.10009190440177917},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0},{"id":"https://openalex.org/C119599485","wikidata":"https://www.wikidata.org/wiki/Q43035","display_name":"Electrical engineering","level":1,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1007/11851561_25","is_oa":false,"landing_page_url":"https://doi.org/10.1007/11851561_25","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.464.2573","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.464.2573","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://rna-informatics.uga.edu/ourpapers/2006-Zhao-TdFold-JMathBiol.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.651.410","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.651.410","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://rna-informatics.uga.edu/ourpapers/2006-Zhao-TdFold-WABI-LNCS.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.89.1194","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.89.1194","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.cs.uga.edu/~cai/papers/2006WABI-RNAFOLD.pdf","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":39,"referenced_works":["https://openalex.org/W179577048","https://openalex.org/W200045149","https://openalex.org/W1574643310","https://openalex.org/W1589421353","https://openalex.org/W1993968482","https://openalex.org/W2005674957","https://openalex.org/W2009265617","https://openalex.org/W2009570821","https://openalex.org/W2009818318","https://openalex.org/W2011368877","https://openalex.org/W2014989101","https://openalex.org/W2023206235","https://openalex.org/W2025763720","https://openalex.org/W2029448190","https://openalex.org/W2054931730","https://openalex.org/W2076756368","https://openalex.org/W2078476938","https://openalex.org/W2086509077","https://openalex.org/W2102046276","https://openalex.org/W2102225325","https://openalex.org/W2104141342","https://openalex.org/W2109297587","https://openalex.org/W2116619380","https://openalex.org/W2117552736","https://openalex.org/W2123241418","https://openalex.org/W2136735223","https://openalex.org/W2137640371","https://openalex.org/W2143406303","https://openalex.org/W2148599336","https://openalex.org/W2159946246","https://openalex.org/W2164230672","https://openalex.org/W2166034077","https://openalex.org/W2167673850","https://openalex.org/W2169105524","https://openalex.org/W2169751581","https://openalex.org/W4234879553","https://openalex.org/W4234887284","https://openalex.org/W4245668478","https://openalex.org/W4251866352"],"related_works":["https://openalex.org/W2610782116","https://openalex.org/W2549419714","https://openalex.org/W2024970374","https://openalex.org/W1980269403","https://openalex.org/W2370815826","https://openalex.org/W1932159282","https://openalex.org/W2433057514","https://openalex.org/W2373436826","https://openalex.org/W4312006216","https://openalex.org/W1581805909"],"abstract_inverted_index":null,"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":1},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":2}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}