{"id":"https://openalex.org/W1579906829","doi":"https://doi.org/10.1007/11818564_3","title":"A Profile HMM for Recognition of Hormone Response Elements","display_name":"A Profile HMM for Recognition of Hormone Response Elements","publication_year":2006,"publication_date":"2006-01-01","ids":{"openalex":"https://openalex.org/W1579906829","doi":"https://doi.org/10.1007/11818564_3","mag":"1579906829"},"language":"en","primary_location":{"id":"doi:10.1007/11818564_3","is_oa":true,"landing_page_url":"https://doi.org/10.1007/11818564_3","pdf_url":"https://link.springer.com/content/pdf/10.1007/11818564_3.pdf","source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://link.springer.com/content/pdf/10.1007/11818564_3.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5113831349","display_name":"Maria Stepanova","orcid":null},"institutions":[{"id":"https://openalex.org/I172675005","display_name":"Nanyang Technological University","ror":"https://ror.org/02e7b5302","country_code":"SG","type":"education","lineage":["https://openalex.org/I172675005"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Maria Stepanova","raw_affiliation_strings":["Bioinformatics Research Centre, Nanyang Technological University, 50 Nanyang Drive, 637553, Singapore"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics Research Centre, Nanyang Technological University, 50 Nanyang Drive, 637553, Singapore","institution_ids":["https://openalex.org/I172675005"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101459743","display_name":"Feng Lin","orcid":"https://orcid.org/0000-0002-1199-5870"},"institutions":[{"id":"https://openalex.org/I172675005","display_name":"Nanyang Technological University","ror":"https://ror.org/02e7b5302","country_code":"SG","type":"education","lineage":["https://openalex.org/I172675005"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Feng Lin","raw_affiliation_strings":["School of Computer Engineering, Nanyang Technological University, Block N4, Nanyang Avenue, 639798, Singapore"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Engineering, Nanyang Technological University, Block N4, Nanyang Avenue, 639798, Singapore","institution_ids":["https://openalex.org/I172675005"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5054220496","display_name":"Valerie C. L. Lin","orcid":"https://orcid.org/0000-0002-7997-2771"},"institutions":[{"id":"https://openalex.org/I172675005","display_name":"Nanyang Technological University","ror":"https://ror.org/02e7b5302","country_code":"SG","type":"education","lineage":["https://openalex.org/I172675005"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Valerie C. -L. Lin","raw_affiliation_strings":["School of Biological Sciences, Nanyang Technological University, 60 Nanyang Drive, 637551, Singapore"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Biological Sciences, Nanyang Technological University, 60 Nanyang Drive, 637551, Singapore","institution_ids":["https://openalex.org/I172675005"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":1.1082,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":{"value":0.81764878,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"15","last_page":"22"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10756","display_name":"Estrogen and related hormone effects","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10756","display_name":"Estrogen and related hormone effects","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11077","display_name":"Genetic and Clinical Aspects of Sex Determination and Chromosomal Abnormalities","score":0.9868999719619751,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11618","display_name":"Cholesterol and Lipid Metabolism","score":0.9735999703407288,"subfield":{"id":"https://openalex.org/subfields/2746","display_name":"Surgery"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/hormone","display_name":"Hormone","score":0.6548546552658081},{"id":"https://openalex.org/keywords/steroid-hormone-receptor","display_name":"Steroid hormone receptor","score":0.6159511208534241},{"id":"https://openalex.org/keywords/steroid-hormone","display_name":"Steroid hormone","score":0.6128021478652954},{"id":"https://openalex.org/keywords/promoter","display_name":"Promoter","score":0.5707393288612366},{"id":"https://openalex.org/keywords/glucocorticoid-receptor","display_name":"Glucocorticoid receptor","score":0.5153431296348572},{"id":"https://openalex.org/keywords/hidden-markov-model","display_name":"Hidden Markov model","score":0.5125229358673096},{"id":"https://openalex.org/keywords/steroid","display_name":"Steroid","score":0.5036441683769226},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.48202621936798096},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4642188549041748},{"id":"https://openalex.org/keywords/hormone-response-element","display_name":"Hormone response element","score":0.43917790055274963},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.38285031914711},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.35706862807273865},{"id":"https://openalex.org/keywords/glucocorticoid","display_name":"Glucocorticoid","score":0.3383503556251526},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.33345723152160645},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2650425434112549},{"id":"https://openalex.org/keywords/endocrinology","display_name":"Endocrinology","score":0.22166875004768372},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.18818333745002747},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.09797948598861694},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.09271886944770813},{"id":"https://openalex.org/keywords/estrogen-receptor","display_name":"Estrogen receptor","score":0.05485653877258301}],"concepts":[{"id":"https://openalex.org/C71315377","wikidata":"https://www.wikidata.org/wiki/Q11364","display_name":"Hormone","level":2,"score":0.6548546552658081},{"id":"https://openalex.org/C2779544216","wikidata":"https://www.wikidata.org/wiki/Q411546","display_name":"Steroid hormone receptor","level":5,"score":0.6159511208534241},{"id":"https://openalex.org/C2776888042","wikidata":"https://www.wikidata.org/wiki/Q422137","display_name":"Steroid hormone","level":3,"score":0.6128021478652954},{"id":"https://openalex.org/C101762097","wikidata":"https://www.wikidata.org/wiki/Q224093","display_name":"Promoter","level":4,"score":0.5707393288612366},{"id":"https://openalex.org/C59493245","wikidata":"https://www.wikidata.org/wiki/Q14877410","display_name":"Glucocorticoid receptor","level":3,"score":0.5153431296348572},{"id":"https://openalex.org/C23224414","wikidata":"https://www.wikidata.org/wiki/Q176769","display_name":"Hidden Markov model","level":2,"score":0.5125229358673096},{"id":"https://openalex.org/C2780902042","wikidata":"https://www.wikidata.org/wiki/Q177911","display_name":"Steroid","level":3,"score":0.5036441683769226},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.48202621936798096},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4642188549041748},{"id":"https://openalex.org/C51445715","wikidata":"https://www.wikidata.org/wiki/Q410477","display_name":"Hormone response element","level":5,"score":0.43917790055274963},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.38285031914711},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.35706862807273865},{"id":"https://openalex.org/C2780841215","wikidata":"https://www.wikidata.org/wiki/Q422549","display_name":"Glucocorticoid","level":2,"score":0.3383503556251526},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.33345723152160645},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2650425434112549},{"id":"https://openalex.org/C134018914","wikidata":"https://www.wikidata.org/wiki/Q162606","display_name":"Endocrinology","level":1,"score":0.22166875004768372},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.18818333745002747},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.09797948598861694},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.09271886944770813},{"id":"https://openalex.org/C84606932","wikidata":"https://www.wikidata.org/wiki/Q416496","display_name":"Estrogen receptor","level":4,"score":0.05485653877258301},{"id":"https://openalex.org/C530470458","wikidata":"https://www.wikidata.org/wiki/Q128581","display_name":"Breast cancer","level":3,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/11818564_3","is_oa":true,"landing_page_url":"https://doi.org/10.1007/11818564_3","pdf_url":"https://link.springer.com/content/pdf/10.1007/11818564_3.pdf","source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"}],"best_oa_location":{"id":"doi:10.1007/11818564_3","is_oa":true,"landing_page_url":"https://doi.org/10.1007/11818564_3","pdf_url":"https://link.springer.com/content/pdf/10.1007/11818564_3.pdf","source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1579906829.pdf","grobid_xml":"https://content.openalex.org/works/W1579906829.grobid-xml"},"referenced_works_count":28,"referenced_works":["https://openalex.org/W297918892","https://openalex.org/W1509108489","https://openalex.org/W1554294376","https://openalex.org/W1986117681","https://openalex.org/W1987122345","https://openalex.org/W1998155250","https://openalex.org/W2044605080","https://openalex.org/W2052495959","https://openalex.org/W2053712212","https://openalex.org/W2068109871","https://openalex.org/W2070397307","https://openalex.org/W2072851671","https://openalex.org/W2078545882","https://openalex.org/W2085124463","https://openalex.org/W2085805103","https://openalex.org/W2090136455","https://openalex.org/W2095833455","https://openalex.org/W2100898329","https://openalex.org/W2101835893","https://openalex.org/W2104133351","https://openalex.org/W2107416858","https://openalex.org/W2128840922","https://openalex.org/W2151831732","https://openalex.org/W2411806695","https://openalex.org/W4235980915","https://openalex.org/W4246127956","https://openalex.org/W4249012312","https://openalex.org/W6817966389"],"related_works":["https://openalex.org/W2907258205","https://openalex.org/W2084980112","https://openalex.org/W5360043","https://openalex.org/W2010499768","https://openalex.org/W2070397307","https://openalex.org/W97536107","https://openalex.org/W155216","https://openalex.org/W948215305","https://openalex.org/W2522627975","https://openalex.org/W2091322528"],"abstract_inverted_index":null,"counts_by_year":[],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
