{"id":"https://openalex.org/W4412878103","doi":"https://doi.org/10.1007/s41666-025-00210-y","title":"Instruction-Tuned Large Language Models for Clinical Data Extraction: Creating an Aortic Measurement Database from CT Radiology Reports","display_name":"Instruction-Tuned Large Language Models for Clinical Data Extraction: Creating an Aortic Measurement Database from CT Radiology Reports","publication_year":2025,"publication_date":"2025-08-03","ids":{"openalex":"https://openalex.org/W4412878103","doi":"https://doi.org/10.1007/s41666-025-00210-y","pmid":"https://pubmed.ncbi.nlm.nih.gov/41230242"},"language":"en","primary_location":{"id":"doi:10.1007/s41666-025-00210-y","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s41666-025-00210-y","pdf_url":null,"source":{"id":"https://openalex.org/S4210196546","display_name":"Journal of Healthcare Informatics Research","issn_l":"2509-4971","issn":["2509-4971","2509-498X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Healthcare Informatics Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5062646602","display_name":"Ely Erez","orcid":"https://orcid.org/0000-0001-5306-2158"},"institutions":[{"id":"https://openalex.org/I1323778983","display_name":"Yale New Haven Hospital","ror":"https://ror.org/05tszed37","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1323778983","https://openalex.org/I4210117499"]},{"id":"https://openalex.org/I32971472","display_name":"Yale University","ror":"https://ror.org/03v76x132","country_code":"US","type":"education","lineage":["https://openalex.org/I32971472"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ely Erez","raw_affiliation_strings":["Division of Cardiac Surgery, Yale School of Medicine, New Haven, CT USA","Division of Cardiac Surgery, Yale School of Medicine, New Haven, CT, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Cardiac Surgery, Yale School of Medicine, New Haven, CT USA","institution_ids":["https://openalex.org/I32971472","https://openalex.org/I1323778983"]},{"raw_affiliation_string":"Division of Cardiac Surgery, Yale School of Medicine, New Haven, CT, USA","institution_ids":["https://openalex.org/I32971472"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5115672256","display_name":"Sedem Dankwa","orcid":null},"institutions":[{"id":"https://openalex.org/I1323778983","display_name":"Yale New Haven Hospital","ror":"https://ror.org/05tszed37","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1323778983","https://openalex.org/I4210117499"]},{"id":"https://openalex.org/I32971472","display_name":"Yale University","ror":"https://ror.org/03v76x132","country_code":"US","type":"education","lineage":["https://openalex.org/I32971472"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sedem Dankwa","raw_affiliation_strings":["Division of Cardiac Surgery, Yale School of Medicine, New Haven, CT USA","Division of Cardiac Surgery, Yale School of Medicine, New Haven, CT, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Cardiac Surgery, Yale School of Medicine, New Haven, CT USA","institution_ids":["https://openalex.org/I32971472","https://openalex.org/I1323778983"]},{"raw_affiliation_string":"Division of Cardiac Surgery, Yale School of Medicine, New Haven, CT, USA","institution_ids":["https://openalex.org/I32971472"]}]},{"author_position":"middle","author":{"id":null,"display_name":"McKenzie Tuttle","orcid":null},"institutions":[{"id":"https://openalex.org/I1323778983","display_name":"Yale New Haven Hospital","ror":"https://ror.org/05tszed37","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1323778983","https://openalex.org/I4210117499"]},{"id":"https://openalex.org/I32971472","display_name":"Yale University","ror":"https://ror.org/03v76x132","country_code":"US","type":"education","lineage":["https://openalex.org/I32971472"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"McKenzie Tuttle","raw_affiliation_strings":["Division of Cardiac Surgery, Yale School of Medicine, New Haven, CT USA","Division of Cardiac Surgery, Yale School of Medicine, New Haven, CT, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Cardiac Surgery, Yale School of Medicine, New Haven, CT USA","institution_ids":["https://openalex.org/I32971472","https://openalex.org/I1323778983"]},{"raw_affiliation_string":"Division of Cardiac Surgery, Yale School of Medicine, New Haven, CT, USA","institution_ids":["https://openalex.org/I32971472"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030187246","display_name":"Afsheen Nasir","orcid":null},"institutions":[{"id":"https://openalex.org/I1323778983","display_name":"Yale New Haven Hospital","ror":"https://ror.org/05tszed37","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1323778983","https://openalex.org/I4210117499"]},{"id":"https://openalex.org/I32971472","display_name":"Yale University","ror":"https://ror.org/03v76x132","country_code":"US","type":"education","lineage":["https://openalex.org/I32971472"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Afsheen Nasir","raw_affiliation_strings":["Division of Cardiac Surgery, Yale School of Medicine, New Haven, CT USA","Division of Cardiac Surgery, Yale School of Medicine, New Haven, CT, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Cardiac Surgery, Yale School of Medicine, New Haven, CT USA","institution_ids":["https://openalex.org/I32971472","https://openalex.org/I1323778983"]},{"raw_affiliation_string":"Division of Cardiac Surgery, Yale School of Medicine, New Haven, CT, USA","institution_ids":["https://openalex.org/I32971472"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062775592","display_name":"Prashanth Vallabhajosyula","orcid":"https://orcid.org/0000-0002-1192-3367"},"institutions":[{"id":"https://openalex.org/I1323778983","display_name":"Yale New Haven Hospital","ror":"https://ror.org/05tszed37","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1323778983","https://openalex.org/I4210117499"]},{"id":"https://openalex.org/I32971472","display_name":"Yale University","ror":"https://ror.org/03v76x132","country_code":"US","type":"education","lineage":["https://openalex.org/I32971472"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Prashanth Vallabhajosyula","raw_affiliation_strings":["Division of Cardiac Surgery, Yale School of Medicine, New Haven, CT USA","Division of Cardiac Surgery, Yale School of Medicine, New Haven, CT, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Cardiac Surgery, Yale School of Medicine, New Haven, CT USA","institution_ids":["https://openalex.org/I32971472","https://openalex.org/I1323778983"]},{"raw_affiliation_string":"Division of Cardiac Surgery, Yale School of Medicine, New Haven, CT, USA","institution_ids":["https://openalex.org/I32971472"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102875312","display_name":"Eric B. Schneider","orcid":"https://orcid.org/0000-0001-8929-9325"},"institutions":[{"id":"https://openalex.org/I32971472","display_name":"Yale University","ror":"https://ror.org/03v76x132","country_code":"US","type":"education","lineage":["https://openalex.org/I32971472"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Eric B. Schneider","raw_affiliation_strings":["Department of Surgery, Yale School of Medicine, New Haven, CT USA","Department of Surgery, Yale School of Medicine, New Haven, CT, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Surgery, Yale School of Medicine, New Haven, CT USA","institution_ids":["https://openalex.org/I32971472"]},{"raw_affiliation_string":"Department of Surgery, Yale School of Medicine, New Haven, CT, USA","institution_ids":["https://openalex.org/I32971472"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026981847","display_name":"Roland Assi","orcid":"https://orcid.org/0000-0002-0863-9867"},"institutions":[{"id":"https://openalex.org/I1323778983","display_name":"Yale New Haven Hospital","ror":"https://ror.org/05tszed37","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1323778983","https://openalex.org/I4210117499"]},{"id":"https://openalex.org/I32971472","display_name":"Yale University","ror":"https://ror.org/03v76x132","country_code":"US","type":"education","lineage":["https://openalex.org/I32971472"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Roland Assi","raw_affiliation_strings":["Division of Cardiac Surgery, Yale School of Medicine, New Haven, CT USA","Division of Cardiac Surgery, Yale School of Medicine, New Haven, CT, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Cardiac Surgery, Yale School of Medicine, New Haven, CT USA","institution_ids":["https://openalex.org/I32971472","https://openalex.org/I1323778983"]},{"raw_affiliation_string":"Division of Cardiac Surgery, Yale School of Medicine, New Haven, CT, USA","institution_ids":["https://openalex.org/I32971472"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5086218019","display_name":"Chin Siang Ong","orcid":"https://orcid.org/0000-0002-4521-0971"},"institutions":[{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]},{"id":"https://openalex.org/I32971472","display_name":"Yale University","ror":"https://ror.org/03v76x132","country_code":"US","type":"education","lineage":["https://openalex.org/I32971472"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Chin Siang Ong","raw_affiliation_strings":["Department of Surgery, Yale School of Medicine, New Haven, CT USA","Harvard T.H. Chan School of Public Health, Boston, MA USA","Department of Surgery, Yale School of Medicine, New Haven, CT, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Surgery, Yale School of Medicine, New Haven, CT USA","institution_ids":["https://openalex.org/I32971472"]},{"raw_affiliation_string":"Harvard T.H. Chan School of Public Health, Boston, MA USA","institution_ids":["https://openalex.org/I136199984"]},{"raw_affiliation_string":"Department of Surgery, Yale School of Medicine, New Haven, CT, USA","institution_ids":["https://openalex.org/I32971472"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5086218019"],"corresponding_institution_ids":["https://openalex.org/I136199984","https://openalex.org/I32971472"],"apc_list":{"value":2490,"currency":"EUR","value_usd":3090},"apc_paid":null,"fwci":3.4624,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.92941282,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":98,"max":99},"biblio":{"volume":"9","issue":"4","first_page":"587","last_page":"605"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13702","display_name":"Machine Learning in Healthcare","score":0.9912999868392944,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T13702","display_name":"Machine Learning in Healthcare","score":0.9912999868392944,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9801999926567078,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12422","display_name":"Radiomics and Machine Learning in Medical Imaging","score":0.973800003528595,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/data-extraction","display_name":"Data extraction","score":0.5737268924713135},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.49814462661743164},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.4405616521835327},{"id":"https://openalex.org/keywords/medical-physics","display_name":"Medical physics","score":0.4223182797431946},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.40181249380111694},{"id":"https://openalex.org/keywords/radiology","display_name":"Radiology","score":0.39394456148147583},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3437789976596832},{"id":"https://openalex.org/keywords/medline","display_name":"MEDLINE","score":0.21757772564888},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.05797263979911804}],"concepts":[{"id":"https://openalex.org/C2777466982","wikidata":"https://www.wikidata.org/wiki/Q5227287","display_name":"Data extraction","level":3,"score":0.5737268924713135},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.49814462661743164},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.4405616521835327},{"id":"https://openalex.org/C19527891","wikidata":"https://www.wikidata.org/wiki/Q1120908","display_name":"Medical physics","level":1,"score":0.4223182797431946},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.40181249380111694},{"id":"https://openalex.org/C126838900","wikidata":"https://www.wikidata.org/wiki/Q77604","display_name":"Radiology","level":1,"score":0.39394456148147583},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3437789976596832},{"id":"https://openalex.org/C2779473830","wikidata":"https://www.wikidata.org/wiki/Q1540899","display_name":"MEDLINE","level":2,"score":0.21757772564888},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.05797263979911804},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1007/s41666-025-00210-y","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s41666-025-00210-y","pdf_url":null,"source":{"id":"https://openalex.org/S4210196546","display_name":"Journal of Healthcare Informatics Research","issn_l":"2509-4971","issn":["2509-4971","2509-498X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Healthcare Informatics Research","raw_type":"journal-article"},{"id":"pmid:41230242","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/41230242","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of healthcare informatics research","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4","score":0.4399999976158142}],"awards":[{"id":"https://openalex.org/G241671818","display_name":null,"funder_award_id":"R01HL168473","funder_id":"https://openalex.org/F4320337338","funder_display_name":"National Heart, Lung, and Blood Institute"}],"funders":[{"id":"https://openalex.org/F4320337338","display_name":"National Heart, Lung, and Blood Institute","ror":"https://ror.org/012pb6c26"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":28,"referenced_works":["https://openalex.org/W2008356268","https://openalex.org/W2063753566","https://openalex.org/W2114361266","https://openalex.org/W2130260860","https://openalex.org/W2141869602","https://openalex.org/W2162461580","https://openalex.org/W2396881363","https://openalex.org/W2911489562","https://openalex.org/W2925598941","https://openalex.org/W2963716420","https://openalex.org/W2979826702","https://openalex.org/W3046375318","https://openalex.org/W3196529262","https://openalex.org/W4223532457","https://openalex.org/W4285137661","https://openalex.org/W4290975873","https://openalex.org/W4307934708","https://openalex.org/W4385573087","https://openalex.org/W4388719547","https://openalex.org/W4389519058","https://openalex.org/W4391292768","https://openalex.org/W4393094733","https://openalex.org/W4393236373","https://openalex.org/W4403488282","https://openalex.org/W4403603005","https://openalex.org/W4404239715","https://openalex.org/W4404782515","https://openalex.org/W4405603599"],"related_works":["https://openalex.org/W2003932708","https://openalex.org/W1967424056","https://openalex.org/W2284877871","https://openalex.org/W2138102289","https://openalex.org/W868043274","https://openalex.org/W2513523087","https://openalex.org/W1187916458","https://openalex.org/W2373861055","https://openalex.org/W1559716973","https://openalex.org/W3109364360"],"abstract_inverted_index":null,"counts_by_year":[{"year":2026,"cited_by_count":2}],"updated_date":"2026-06-13T06:13:01.061226","created_date":"2025-10-10T00:00:00"}
