{"id":"https://openalex.org/W4390545867","doi":"https://doi.org/10.1007/s41666-023-00157-y","title":"Contextual Word Embedding for Biomedical Knowledge Extraction: a Rapid Review and Case Study","display_name":"Contextual Word Embedding for Biomedical Knowledge Extraction: a Rapid Review and Case Study","publication_year":2024,"publication_date":"2024-01-03","ids":{"openalex":"https://openalex.org/W4390545867","doi":"https://doi.org/10.1007/s41666-023-00157-y","pmid":"https://pubmed.ncbi.nlm.nih.gov/38273979"},"language":"en","primary_location":{"id":"doi:10.1007/s41666-023-00157-y","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s41666-023-00157-y","pdf_url":null,"source":{"id":"https://openalex.org/S4210196546","display_name":"Journal of Healthcare Informatics Research","issn_l":"2509-4971","issn":["2509-4971","2509-498X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Healthcare Informatics Research","raw_type":"journal-article"},"type":"review","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10805696/pdf/41666_2023_Article_157.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5059681635","display_name":"Dinithi Vithanage","orcid":"https://orcid.org/0000-0001-5851-7158"},"institutions":[{"id":"https://openalex.org/I204824540","display_name":"University of Wollongong","ror":"https://ror.org/00jtmb277","country_code":"AU","type":"education","lineage":["https://openalex.org/I204824540"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Dinithi Vithanage","raw_affiliation_strings":["School of Computing and Information Technology, University of Wollongong, Wollongong, NSW 2522 Australia","School of Computing and Information Technology, University of Wollongong, Wollongong, NSW, 2522, Australia"],"raw_orcid":"https://orcid.org/0000-0001-5851-7158","affiliations":[{"raw_affiliation_string":"School of Computing and Information Technology, University of Wollongong, Wollongong, NSW 2522 Australia","institution_ids":["https://openalex.org/I204824540"]},{"raw_affiliation_string":"School of Computing and Information Technology, University of Wollongong, Wollongong, NSW, 2522, Australia","institution_ids":["https://openalex.org/I204824540"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064032702","display_name":"Ping Yu","orcid":"https://orcid.org/0000-0002-7910-9396"},"institutions":[{"id":"https://openalex.org/I204824540","display_name":"University of Wollongong","ror":"https://ror.org/00jtmb277","country_code":"AU","type":"education","lineage":["https://openalex.org/I204824540"]}],"countries":["AU"],"is_corresponding":true,"raw_author_name":"Ping Yu","raw_affiliation_strings":["School of Computing and Information Technology, University of Wollongong, Wollongong, NSW 2522 Australia","School of Computing and Information Technology, University of Wollongong, Wollongong, NSW, 2522, Australia"],"raw_orcid":"https://orcid.org/0000-0002-7910-9396","affiliations":[{"raw_affiliation_string":"School of Computing and Information Technology, University of Wollongong, Wollongong, NSW 2522 Australia","institution_ids":["https://openalex.org/I204824540"]},{"raw_affiliation_string":"School of Computing and Information Technology, University of Wollongong, Wollongong, NSW, 2522, Australia","institution_ids":["https://openalex.org/I204824540"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100435848","display_name":"Lei Wang","orcid":"https://orcid.org/0000-0002-0961-0441"},"institutions":[{"id":"https://openalex.org/I204824540","display_name":"University of Wollongong","ror":"https://ror.org/00jtmb277","country_code":"AU","type":"education","lineage":["https://openalex.org/I204824540"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Lei Wang","raw_affiliation_strings":["School of Computing and Information Technology, University of Wollongong, Wollongong, NSW 2522 Australia","School of Computing and Information Technology, University of Wollongong, Wollongong, NSW, 2522, Australia"],"raw_orcid":"https://orcid.org/0000-0002-0961-0441","affiliations":[{"raw_affiliation_string":"School of Computing and Information Technology, University of Wollongong, Wollongong, NSW 2522 Australia","institution_ids":["https://openalex.org/I204824540"]},{"raw_affiliation_string":"School of Computing and Information Technology, University of Wollongong, Wollongong, NSW, 2522, Australia","institution_ids":["https://openalex.org/I204824540"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5040465739","display_name":"Chao Deng","orcid":null},"institutions":[{"id":"https://openalex.org/I204824540","display_name":"University of Wollongong","ror":"https://ror.org/00jtmb277","country_code":"AU","type":"education","lineage":["https://openalex.org/I204824540"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Chao Deng","raw_affiliation_strings":["School of Medical, Indigenous and Health Sciences, University of Wollongong, Wollongong, NSW 2522 Australia","School of Medical, Indigenous and Health Sciences, University of Wollongong, Wollongong, NSW, 2522, Australia"],"raw_orcid":"https://orcid.org/0000-0003-1147-5741","affiliations":[{"raw_affiliation_string":"School of Medical, Indigenous and Health Sciences, University of Wollongong, Wollongong, NSW 2522 Australia","institution_ids":["https://openalex.org/I204824540"]},{"raw_affiliation_string":"School of Medical, Indigenous and Health Sciences, University of Wollongong, Wollongong, NSW, 2522, Australia","institution_ids":["https://openalex.org/I204824540"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5064032702"],"corresponding_institution_ids":["https://openalex.org/I204824540"],"apc_list":{"value":2490,"currency":"EUR","value_usd":3090},"apc_paid":null,"fwci":3.6829,"has_fulltext":true,"cited_by_count":17,"citation_normalized_percentile":{"value":0.935304,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":98,"max":100},"biblio":{"volume":"8","issue":"1","first_page":"158","last_page":"179"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.4447000026702881,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.4447000026702881,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.40939998626708984,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13702","display_name":"Machine Learning in Healthcare","score":0.02319999970495701,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6806161999702454},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.6580847501754761},{"id":"https://openalex.org/keywords/biomedical-text-mining","display_name":"Biomedical text mining","score":0.6218315958976746},{"id":"https://openalex.org/keywords/word-embedding","display_name":"Word embedding","score":0.6085134148597717},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5768793225288391},{"id":"https://openalex.org/keywords/embedding","display_name":"Embedding","score":0.49786996841430664},{"id":"https://openalex.org/keywords/word","display_name":"Word (group theory)","score":0.4954639673233032},{"id":"https://openalex.org/keywords/information-extraction","display_name":"Information extraction","score":0.45812758803367615},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.4160376489162445},{"id":"https://openalex.org/keywords/text-mining","display_name":"Text mining","score":0.29575979709625244},{"id":"https://openalex.org/keywords/linguistics","display_name":"Linguistics","score":0.16243556141853333}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6806161999702454},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.6580847501754761},{"id":"https://openalex.org/C165141518","wikidata":"https://www.wikidata.org/wiki/Q4915126","display_name":"Biomedical text mining","level":3,"score":0.6218315958976746},{"id":"https://openalex.org/C2777462759","wikidata":"https://www.wikidata.org/wiki/Q18395344","display_name":"Word embedding","level":3,"score":0.6085134148597717},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5768793225288391},{"id":"https://openalex.org/C41608201","wikidata":"https://www.wikidata.org/wiki/Q980509","display_name":"Embedding","level":2,"score":0.49786996841430664},{"id":"https://openalex.org/C90805587","wikidata":"https://www.wikidata.org/wiki/Q10944557","display_name":"Word (group theory)","level":2,"score":0.4954639673233032},{"id":"https://openalex.org/C195807954","wikidata":"https://www.wikidata.org/wiki/Q1662562","display_name":"Information extraction","level":2,"score":0.45812758803367615},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.4160376489162445},{"id":"https://openalex.org/C71472368","wikidata":"https://www.wikidata.org/wiki/Q676880","display_name":"Text mining","level":2,"score":0.29575979709625244},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.16243556141853333},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.1007/s41666-023-00157-y","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s41666-023-00157-y","pdf_url":null,"source":{"id":"https://openalex.org/S4210196546","display_name":"Journal of Healthcare Informatics Research","issn_l":"2509-4971","issn":["2509-4971","2509-498X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Healthcare Informatics Research","raw_type":"journal-article"},{"id":"pmid:38273979","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38273979","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of healthcare informatics research","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10805696","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10805696","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10805696/pdf/41666_2023_Article_157.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Healthc Inform Res","raw_type":"Text"},{"id":"pmh:oai:ro.uow.edu.au:test2021-15722","is_oa":false,"landing_page_url":"https://ro.uow.edu.au/test2021/10175","pdf_url":null,"source":{"id":"https://openalex.org/S4306400510","display_name":"Research Online (University of Wollongong)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I204824540","host_organization_name":"University of Wollongong","host_organization_lineage":["https://openalex.org/I204824540"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Scopus Harvesting Series","raw_type":"text"},{"id":"pmh:oai:figshare.com:article/27802809","is_oa":true,"landing_page_url":"https://figshare.com/articles/journal_contribution/Contextual_Word_Embedding_for_Biomedical_Knowledge_Extraction_a_Rapid_Review_and_Case_Study/27802809","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:pubmedcentral.nih.gov:10805696","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10805696","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10805696/pdf/41666_2023_Article_157.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Healthc Inform Res","raw_type":"Text"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/4","score":0.6899999976158142,"display_name":"Quality Education"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320320969","display_name":"University of Wollongong","ror":"https://ror.org/00jtmb277"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4390545867.pdf"},"referenced_works_count":33,"referenced_works":["https://openalex.org/W2747680751","https://openalex.org/W2753588101","https://openalex.org/W2896457183","https://openalex.org/W2899463504","https://openalex.org/W2911489562","https://openalex.org/W2952958555","https://openalex.org/W2962739339","https://openalex.org/W2963716420","https://openalex.org/W2967690619","https://openalex.org/W2971258845","https://openalex.org/W2972483465","https://openalex.org/W3002784191","https://openalex.org/W3030082895","https://openalex.org/W3030645549","https://openalex.org/W3035102548","https://openalex.org/W3035394311","https://openalex.org/W3037458976","https://openalex.org/W3042750053","https://openalex.org/W3081978500","https://openalex.org/W3091311542","https://openalex.org/W3096425023","https://openalex.org/W3098115739","https://openalex.org/W3104597243","https://openalex.org/W3136657289","https://openalex.org/W3160137267","https://openalex.org/W3165973893","https://openalex.org/W3177920269","https://openalex.org/W3207867270","https://openalex.org/W4220989182","https://openalex.org/W4287126642","https://openalex.org/W4292779060","https://openalex.org/W4299574851","https://openalex.org/W4385245566"],"related_works":["https://openalex.org/W4288407670","https://openalex.org/W2950396480","https://openalex.org/W947140380","https://openalex.org/W2911655849","https://openalex.org/W4286432911","https://openalex.org/W4230884544","https://openalex.org/W4245453790","https://openalex.org/W3194985222","https://openalex.org/W3216571906","https://openalex.org/W4214830338"],"abstract_inverted_index":null,"counts_by_year":[{"year":2026,"cited_by_count":4},{"year":2025,"cited_by_count":8},{"year":2024,"cited_by_count":5}],"updated_date":"2026-05-10T08:33:47.465468","created_date":"2025-10-10T00:00:00"}