{"id":"https://openalex.org/W4415584087","doi":"https://doi.org/10.1007/s41109-025-00741-8","title":"Augmented visualization of class\u2013cluster match in patient similarity networks","display_name":"Augmented visualization of class\u2013cluster match in patient similarity networks","publication_year":2025,"publication_date":"2025-10-27","ids":{"openalex":"https://openalex.org/W4415584087","doi":"https://doi.org/10.1007/s41109-025-00741-8"},"language":"en","primary_location":{"id":"doi:10.1007/s41109-025-00741-8","is_oa":true,"landing_page_url":"https://doi.org/10.1007/s41109-025-00741-8","pdf_url":"https://appliednetsci.springeropen.com/counter/pdf/10.1007/s41109-025-00741-8","source":{"id":"https://openalex.org/S3035517252","display_name":"Applied Network Science","issn_l":"2364-8228","issn":["2364-8228"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319965","host_organization_name":"Springer Nature","host_organization_lineage":["https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Applied Network Science","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://appliednetsci.springeropen.com/counter/pdf/10.1007/s41109-025-00741-8","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5063014837","display_name":"Ond\u0159ej Jan\u010da","orcid":"https://orcid.org/0000-0003-0640-4850"},"institutions":[{"id":"https://openalex.org/I142208455","display_name":"VSB - Technical University of Ostrava","ror":"https://ror.org/05x8mcb75","country_code":"CZ","type":"education","lineage":["https://openalex.org/I142208455"]}],"countries":["CZ"],"is_corresponding":true,"raw_author_name":"Ondrej Janca","raw_affiliation_strings":["Department of Computer Science, VSB - Technical University Ostrava, 17. listopadu 15/2172, Ostrava, 70800, Czech Republic"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, VSB - Technical University Ostrava, 17. listopadu 15/2172, Ostrava, 70800, Czech Republic","institution_ids":["https://openalex.org/I142208455"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5092710855","display_name":"Arootin Gharibian","orcid":"https://orcid.org/0000-0001-7819-0842"},"institutions":[{"id":"https://openalex.org/I142208455","display_name":"VSB - Technical University of Ostrava","ror":"https://ror.org/05x8mcb75","country_code":"CZ","type":"education","lineage":["https://openalex.org/I142208455"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Arootin Gharibian","raw_affiliation_strings":["Department of Computer Science, VSB - Technical University Ostrava, 17. listopadu 15/2172, Ostrava, 70800, Czech Republic"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, VSB - Technical University Ostrava, 17. listopadu 15/2172, Ostrava, 70800, Czech Republic","institution_ids":["https://openalex.org/I142208455"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054972868","display_name":"Eli\u0161ka Ochodkov\u00e1","orcid":"https://orcid.org/0000-0001-8892-8900"},"institutions":[{"id":"https://openalex.org/I142208455","display_name":"VSB - Technical University of Ostrava","ror":"https://ror.org/05x8mcb75","country_code":"CZ","type":"education","lineage":["https://openalex.org/I142208455"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Eliska Ochodkova","raw_affiliation_strings":["Department of Computer Science, VSB - Technical University Ostrava, 17. listopadu 15/2172, Ostrava, 70800, Czech Republic"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, VSB - Technical University Ostrava, 17. listopadu 15/2172, Ostrava, 70800, Czech Republic","institution_ids":["https://openalex.org/I142208455"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016480427","display_name":"Eva Kriegov\u00e1","orcid":"https://orcid.org/0000-0002-8969-4197"},"institutions":[{"id":"https://openalex.org/I4210107161","display_name":"University Hospital Olomouc","ror":"https://ror.org/01jxtne23","country_code":"CZ","type":"healthcare","lineage":["https://openalex.org/I4210107161"]},{"id":"https://openalex.org/I70703428","display_name":"Palack\u00fd University Olomouc","ror":"https://ror.org/04qxnmv42","country_code":"CZ","type":"education","lineage":["https://openalex.org/I70703428"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Eva Kriegova","raw_affiliation_strings":["Department of Immunology, Palacky University Olomouc and University Hospital Olomouc, Krizkovskeho, Olomouc, 779 00, Czech Republic"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Immunology, Palacky University Olomouc and University Hospital Olomouc, Krizkovskeho, Olomouc, 779 00, Czech Republic","institution_ids":["https://openalex.org/I4210107161","https://openalex.org/I70703428"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5054131585","display_name":"Milo\u0161 Kud\u011blka","orcid":"https://orcid.org/0000-0002-7219-1008"},"institutions":[{"id":"https://openalex.org/I142208455","display_name":"VSB - Technical University of Ostrava","ror":"https://ror.org/05x8mcb75","country_code":"CZ","type":"education","lineage":["https://openalex.org/I142208455"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Milos Kudelka","raw_affiliation_strings":["Department of Computer Science, VSB - Technical University Ostrava, 17. listopadu 15/2172, Ostrava, 70800, Czech Republic"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, VSB - Technical University Ostrava, 17. listopadu 15/2172, Ostrava, 70800, Czech Republic","institution_ids":["https://openalex.org/I142208455"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5063014837"],"corresponding_institution_ids":["https://openalex.org/I142208455"],"apc_list":{"value":790,"currency":"GBP","value_usd":969},"apc_paid":{"value":790,"currency":"GBP","value_usd":969},"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.25429501,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"10","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9962000250816345,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9962000250816345,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13702","display_name":"Machine Learning in Healthcare","score":0.9815000295639038,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11396","display_name":"Artificial Intelligence in Healthcare","score":0.9563000202178955,"subfield":{"id":"https://openalex.org/subfields/3605","display_name":"Health Information Management"},"field":{"id":"https://openalex.org/fields/36","display_name":"Health Professions"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.7073000073432922},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.6414999961853027},{"id":"https://openalex.org/keywords/complement","display_name":"Complement (music)","score":0.5781999826431274},{"id":"https://openalex.org/keywords/intuition","display_name":"Intuition","score":0.557699978351593},{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.4975999891757965},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.4496999979019165},{"id":"https://openalex.org/keywords/data-visualization","display_name":"Data visualization","score":0.4415000081062317},{"id":"https://openalex.org/keywords/creative-visualization","display_name":"Creative visualization","score":0.3727000057697296}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.73089998960495},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.7073000073432922},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.6414999961853027},{"id":"https://openalex.org/C112313634","wikidata":"https://www.wikidata.org/wiki/Q7886648","display_name":"Complement (music)","level":5,"score":0.5781999826431274},{"id":"https://openalex.org/C132010649","wikidata":"https://www.wikidata.org/wiki/Q189222","display_name":"Intuition","level":2,"score":0.557699978351593},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5557000041007996},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5321000218391418},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.4975999891757965},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.4496999979019165},{"id":"https://openalex.org/C172367668","wikidata":"https://www.wikidata.org/wiki/Q6504956","display_name":"Data visualization","level":3,"score":0.4415000081062317},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.4271000027656555},{"id":"https://openalex.org/C14669888","wikidata":"https://www.wikidata.org/wiki/Q4014850","display_name":"Creative visualization","level":3,"score":0.3727000057697296},{"id":"https://openalex.org/C117220453","wikidata":"https://www.wikidata.org/wiki/Q5172842","display_name":"Correlation","level":2,"score":0.367000013589859},{"id":"https://openalex.org/C25343380","wikidata":"https://www.wikidata.org/wiki/Q277521","display_name":"Relation (database)","level":2,"score":0.35350000858306885},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.3352999985218048},{"id":"https://openalex.org/C185578843","wikidata":"https://www.wikidata.org/wiki/Q10609775","display_name":"Information visualization","level":3,"score":0.32330000400543213},{"id":"https://openalex.org/C116409475","wikidata":"https://www.wikidata.org/wiki/Q1385056","display_name":"External Data Representation","level":2,"score":0.3158000111579895},{"id":"https://openalex.org/C26517878","wikidata":"https://www.wikidata.org/wiki/Q228039","display_name":"Key (lock)","level":2,"score":0.3125999867916107},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.2985999882221222},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.28110000491142273},{"id":"https://openalex.org/C143271835","wikidata":"https://www.wikidata.org/wiki/Q254515","display_name":"Similitude","level":2,"score":0.27239999175071716},{"id":"https://openalex.org/C168167062","wikidata":"https://www.wikidata.org/wiki/Q1117970","display_name":"Component (thermodynamics)","level":2,"score":0.26350000500679016},{"id":"https://openalex.org/C92835128","wikidata":"https://www.wikidata.org/wiki/Q1277447","display_name":"Hierarchical clustering","level":3,"score":0.26080000400543213},{"id":"https://openalex.org/C34947359","wikidata":"https://www.wikidata.org/wiki/Q665189","display_name":"Complex network","level":2,"score":0.25929999351501465}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1007/s41109-025-00741-8","is_oa":true,"landing_page_url":"https://doi.org/10.1007/s41109-025-00741-8","pdf_url":"https://appliednetsci.springeropen.com/counter/pdf/10.1007/s41109-025-00741-8","source":{"id":"https://openalex.org/S3035517252","display_name":"Applied Network Science","issn_l":"2364-8228","issn":["2364-8228"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319965","host_organization_name":"Springer Nature","host_organization_lineage":["https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Applied Network Science","raw_type":"journal-article"},{"id":"pmh:oai:doaj.org/article:2c6c210de5ed48eb982621ed2e66e2b9","is_oa":true,"landing_page_url":"https://doaj.org/article/2c6c210de5ed48eb982621ed2e66e2b9","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Applied Network Science, Vol 10, Iss 1, Pp 1-21 (2025)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1007/s41109-025-00741-8","is_oa":true,"landing_page_url":"https://doi.org/10.1007/s41109-025-00741-8","pdf_url":"https://appliednetsci.springeropen.com/counter/pdf/10.1007/s41109-025-00741-8","source":{"id":"https://openalex.org/S3035517252","display_name":"Applied Network Science","issn_l":"2364-8228","issn":["2364-8228"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319965","host_organization_name":"Springer Nature","host_organization_lineage":["https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Applied Network Science","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3487419101","display_name":null,"funder_award_id":"FNOl 0098892","funder_id":"https://openalex.org/F4320321798","funder_display_name":"Ministerstvo Zdravotnictv\u00ed Cesk\u00e9 Republiky"},{"id":"https://openalex.org/G3974059543","display_name":null,"funder_award_id":"0098892","funder_id":"https://openalex.org/F4320321798","funder_display_name":"Ministerstvo Zdravotnictv\u00ed Cesk\u00e9 Republiky"}],"funders":[{"id":"https://openalex.org/F4320321798","display_name":"Ministerstvo Zdravotnictv\u00ed Cesk\u00e9 Republiky","ror":"https://ror.org/00y6khe77"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4415584087.pdf","grobid_xml":"https://content.openalex.org/works/W4415584087.grobid-xml"},"referenced_works_count":26,"referenced_works":["https://openalex.org/W2001619934","https://openalex.org/W2010855723","https://openalex.org/W2059185913","https://openalex.org/W2109553965","https://openalex.org/W2131681506","https://openalex.org/W2620760558","https://openalex.org/W2726857507","https://openalex.org/W2766234610","https://openalex.org/W2773275559","https://openalex.org/W2791704581","https://openalex.org/W2793350103","https://openalex.org/W2999309192","https://openalex.org/W3084116491","https://openalex.org/W3198395019","https://openalex.org/W4296311855","https://openalex.org/W4308117577","https://openalex.org/W4321214126","https://openalex.org/W4386416244","https://openalex.org/W4387532125","https://openalex.org/W4395006053","https://openalex.org/W4402033342","https://openalex.org/W4405791594","https://openalex.org/W4409167992","https://openalex.org/W4412121470","https://openalex.org/W6888993062","https://openalex.org/W6945154658"],"related_works":[],"abstract_inverted_index":{"Abstract":[0],"Visual":[1],"representation":[2],"of":[3,18,79,103,115,140],"data":[4,36,54],"mining":[5],"results":[6],"is":[7],"essential":[8],"for":[9,31,105],"accurate":[10],"assessment":[11],"by":[12],"domain":[13],"experts":[14],"without":[15],"extensive":[16],"knowledge":[17],"complex":[19],"relationships":[20,44,88],"in":[21,48,94,112,131],"multi-label":[22],"data.":[23],"Similarity":[24],"networks":[25,143],"are":[26],"a":[27,56,110,116,123],"commonly":[28],"used":[29],"tool":[30],"analyzing":[32],"such":[33],"data,":[34],"utilizing":[35,144],"clustering":[37],"and":[38,41,70,108,162],"community":[39],"detection":[40],"visualizing":[42],"the":[43,77,80,91,101,113],"between":[45],"individual":[46],"objects":[47],"an":[49,132,137],"understandable":[50],"form.":[51],"In":[52],"clinical":[53,157],"mining,":[55],"patient":[57,65,141],"similarity":[58,142],"network":[59],"(PSN)":[60],"can":[61],"help":[62],"clinicians":[63],"identify":[64],"clusters":[66],"with":[67],"representative":[68],"labels":[69],"interpret":[71],"their":[72],"relationships.":[73],"This":[74],"article":[75],"demonstrates":[76],"use":[78],"Matthews":[81],"correlation":[82],"coefficient":[83],"(MCC)":[84],"to":[85,89,167],"analyze":[86],"cluster-class":[87],"complement":[90],"PSN":[92],"visualization":[93,139],"several":[95,152],"synthetic":[96],"datasets.":[97],"We":[98,135,147],"then":[99],"discuss":[100],"limitations":[102],"MCC":[104,118],"this":[106,149],"application":[107],"propose":[109,136],"modification":[111],"form":[114],"rescaled":[117],"(rMCC).":[119],"Furthermore,":[120],"we":[121],"introduce":[122],"novel":[124],"measure,":[125],"Connection":[126],"Purity,":[127],"that":[128],"complements":[129],"rMCC":[130],"informative":[133],"way.":[134],"augmented":[138],"both":[145],"measures.":[146],"demonstrate":[148],"approach":[150],"on":[151],"real-world":[153],"datasets,":[154],"showing":[155],"how":[156,163],"intuition":[158],"may":[159],"be":[160],"biased":[161],"our":[164],"method":[165],"helps":[166],"rectify":[168],"it.":[169]},"counts_by_year":[],"updated_date":"2026-05-06T08:25:59.206177","created_date":"2025-10-28T00:00:00"}
