{"id":"https://openalex.org/W4396519214","doi":"https://doi.org/10.1007/s41109-024-00616-4","title":"Approximate inference for longitudinal mechanistic HIV contact network","display_name":"Approximate inference for longitudinal mechanistic HIV contact network","publication_year":2024,"publication_date":"2024-04-30","ids":{"openalex":"https://openalex.org/W4396519214","doi":"https://doi.org/10.1007/s41109-024-00616-4","pmid":"https://pubmed.ncbi.nlm.nih.gov/38699247"},"language":"en","primary_location":{"id":"doi:10.1007/s41109-024-00616-4","is_oa":true,"landing_page_url":"http://dx.doi.org/10.1007/s41109-024-00616-4","pdf_url":"https://link.springer.com/content/pdf/10.1007/s41109-024-00616-4.pdf","source":{"id":"https://openalex.org/S3035517252","display_name":"Applied Network Science","issn_l":"2364-8228","issn":["2364-8228"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319965","host_organization_name":"Springer Nature","host_organization_lineage":["https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Applied Network Science","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://link.springer.com/content/pdf/10.1007/s41109-024-00616-4.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5093711444","display_name":"Octavious Smiley","orcid":null},"institutions":[{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]},{"id":"https://openalex.org/I4210101190","display_name":"Cancer Research And Biostatistics","ror":"https://ror.org/01575p865","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210101190"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Octavious Smiley","raw_affiliation_strings":["Biostatistics, Harvard University, 677 Huntington Ave, Boston, MA 02115 USA","Biostatistics, Harvard University, 677 Huntington Ave, Boston, MA, 02115, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biostatistics, Harvard University, 677 Huntington Ave, Boston, MA 02115 USA","institution_ids":["https://openalex.org/I4210101190"]},{"raw_affiliation_string":"Biostatistics, Harvard University, 677 Huntington Ave, Boston, MA, 02115, USA","institution_ids":["https://openalex.org/I136199984"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067794169","display_name":"Till Hoffmann","orcid":"https://orcid.org/0000-0003-4403-0722"},"institutions":[{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]},{"id":"https://openalex.org/I4210101190","display_name":"Cancer Research And Biostatistics","ror":"https://ror.org/01575p865","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210101190"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Till Hoffmann","raw_affiliation_strings":["Biostatistics, Harvard University, 677 Huntington Ave, Boston, MA 02115 USA","Biostatistics, Harvard University, 677 Huntington Ave, Boston, MA, 02115, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biostatistics, Harvard University, 677 Huntington Ave, Boston, MA 02115 USA","institution_ids":["https://openalex.org/I4210101190"]},{"raw_affiliation_string":"Biostatistics, Harvard University, 677 Huntington Ave, Boston, MA, 02115, USA","institution_ids":["https://openalex.org/I136199984"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5041695925","display_name":"Jukka\u2010Pekka Onnela","orcid":"https://orcid.org/0000-0001-6613-8668"},"institutions":[{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]},{"id":"https://openalex.org/I4210101190","display_name":"Cancer Research And Biostatistics","ror":"https://ror.org/01575p865","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210101190"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jukka-Pekka Onnela","raw_affiliation_strings":["Biostatistics, Harvard University, 677 Huntington Ave, Boston, MA 02115 USA","Biostatistics, Harvard University, 677 Huntington Ave, Boston, MA, 02115, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biostatistics, Harvard University, 677 Huntington Ave, Boston, MA 02115 USA","institution_ids":["https://openalex.org/I4210101190"]},{"raw_affiliation_string":"Biostatistics, Harvard University, 677 Huntington Ave, Boston, MA, 02115, USA","institution_ids":["https://openalex.org/I136199984"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5093711444"],"corresponding_institution_ids":["https://openalex.org/I136199984","https://openalex.org/I4210101190"],"apc_list":{"value":1390,"currency":"USD","value_usd":1390},"apc_paid":{"value":1390,"currency":"USD","value_usd":1390},"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.04673954,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"9","issue":"1","first_page":"12","last_page":"12"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10064","display_name":"Complex Network Analysis Techniques","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/3109","display_name":"Statistical and Nonlinear Physics"},"field":{"id":"https://openalex.org/fields/31","display_name":"Physics and Astronomy"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10064","display_name":"Complex Network Analysis Techniques","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/3109","display_name":"Statistical and Nonlinear Physics"},"field":{"id":"https://openalex.org/fields/31","display_name":"Physics and Astronomy"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12056","display_name":"Markov Chains and Monte Carlo Methods","score":0.991599977016449,"subfield":{"id":"https://openalex.org/subfields/2613","display_name":"Statistics and Probability"},"field":{"id":"https://openalex.org/fields/26","display_name":"Mathematics"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11152","display_name":"Stochastic processes and statistical mechanics","score":0.9847999811172485,"subfield":{"id":"https://openalex.org/subfields/2610","display_name":"Mathematical Physics"},"field":{"id":"https://openalex.org/fields/26","display_name":"Mathematics"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.7309153079986572},{"id":"https://openalex.org/keywords/human-immunodeficiency-virus","display_name":"Human immunodeficiency virus (HIV)","score":0.5927865505218506},{"id":"https://openalex.org/keywords/econometrics","display_name":"Econometrics","score":0.41905975341796875},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4058757424354553},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3269507884979248},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.28994566202163696},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.28636935353279114},{"id":"https://openalex.org/keywords/virology","display_name":"Virology","score":0.26169726252555847},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.25445055961608887}],"concepts":[{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.7309153079986572},{"id":"https://openalex.org/C3013748606","wikidata":"https://www.wikidata.org/wiki/Q15787","display_name":"Human immunodeficiency virus (HIV)","level":2,"score":0.5927865505218506},{"id":"https://openalex.org/C149782125","wikidata":"https://www.wikidata.org/wiki/Q160039","display_name":"Econometrics","level":1,"score":0.41905975341796875},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4058757424354553},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3269507884979248},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.28994566202163696},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.28636935353279114},{"id":"https://openalex.org/C159047783","wikidata":"https://www.wikidata.org/wiki/Q7215","display_name":"Virology","level":1,"score":0.26169726252555847},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.25445055961608887}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1007/s41109-024-00616-4","is_oa":true,"landing_page_url":"http://dx.doi.org/10.1007/s41109-024-00616-4","pdf_url":"https://link.springer.com/content/pdf/10.1007/s41109-024-00616-4.pdf","source":{"id":"https://openalex.org/S3035517252","display_name":"Applied Network Science","issn_l":"2364-8228","issn":["2364-8228"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319965","host_organization_name":"Springer Nature","host_organization_lineage":["https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Applied Network Science","raw_type":"journal-article"},{"id":"pmid:38699247","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38699247","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Applied network science","raw_type":null},{"id":"pmh:oai:doaj.org/article:b78d669453d94b18aa0b7b2b1f9e5728","is_oa":false,"landing_page_url":"https://doaj.org/article/b78d669453d94b18aa0b7b2b1f9e5728","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Applied Network Science, Vol 9, Iss 1, Pp 1-17 (2024)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:11060975","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11060975","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11060975/pdf/41109_2024_Article_616.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Appl Netw Sci","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1007/s41109-024-00616-4","is_oa":true,"landing_page_url":"http://dx.doi.org/10.1007/s41109-024-00616-4","pdf_url":"https://link.springer.com/content/pdf/10.1007/s41109-024-00616-4.pdf","source":{"id":"https://openalex.org/S3035517252","display_name":"Applied Network Science","issn_l":"2364-8228","issn":["2364-8228"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319965","host_organization_name":"Springer Nature","host_organization_lineage":["https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Applied Network Science","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being","score":0.7900000214576721}],"awards":[{"id":"https://openalex.org/G1287892193","display_name":null,"funder_award_id":"R01 AI138901","funder_id":"https://openalex.org/F4320337355","funder_display_name":"National Institute of Allergy and Infectious Diseases"},{"id":"https://openalex.org/G1808139159","display_name":null,"funder_award_id":"#R01AI138901","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337355","display_name":"National Institute of Allergy and Infectious Diseases","ror":"https://ror.org/043z4tv69"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4396519214.pdf","grobid_xml":"https://content.openalex.org/works/W4396519214.grobid-xml"},"referenced_works_count":29,"referenced_works":["https://openalex.org/W1492075988","https://openalex.org/W1498561911","https://openalex.org/W1594863551","https://openalex.org/W1965175390","https://openalex.org/W1979205528","https://openalex.org/W1994687138","https://openalex.org/W2003168701","https://openalex.org/W2060788622","https://openalex.org/W2067222397","https://openalex.org/W2095325022","https://openalex.org/W2116416291","https://openalex.org/W2124637492","https://openalex.org/W2135780127","https://openalex.org/W2160268549","https://openalex.org/W2294602815","https://openalex.org/W2412992887","https://openalex.org/W2593177367","https://openalex.org/W2752845219","https://openalex.org/W2767304872","https://openalex.org/W2895152177","https://openalex.org/W2902681497","https://openalex.org/W2911411763","https://openalex.org/W3001478529","https://openalex.org/W3001875368","https://openalex.org/W3010226778","https://openalex.org/W3169523891","https://openalex.org/W4205777209","https://openalex.org/W4224989588","https://openalex.org/W6833403949"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W2382290278","https://openalex.org/W4395014643","https://openalex.org/W4391913857","https://openalex.org/W2350741829"],"abstract_inverted_index":{"Network":[0],"models":[1,13,35,50,69],"are":[2,70,155],"increasingly":[3],"used":[4],"to":[5,130,144,157,165,188,194],"study":[6,122],"infectious":[7],"disease":[8],"spread.":[9],"Exponential":[10],"Random":[11],"Graph":[12],"have":[14,101],"a":[15,85,89,119,131],"history":[16],"in":[17,137,139,178,183],"this":[18],"area,":[19],"with":[20,51,103],"scalable":[21],"inference":[22,110,128],"methods":[23],"now":[24],"available.":[25],"An":[26],"alternative":[27],"approach":[28],"uses":[29],"mechanistic":[30,49],"network":[31,34,65,79,176],"models.":[32],"Mechanistic":[33],"directly":[36],"capture":[37],"individual":[38],"behaviors,":[39],"making":[40],"them":[41],"suitable":[42],"for":[43,72,98,112],"studying":[44],"sexually":[45,179],"transmitted":[46,180],"diseases.":[47],"Combining":[48],"Approximate":[52],"Bayesian":[53],"Computation":[54],"allows":[55],"flexible":[56],"modeling":[57],"using":[58],"domain-specific":[59],"interaction":[60],"rules":[61],"among":[62],"agents,":[63],"avoiding":[64],"model":[66,93],"oversimplifications.":[67],"These":[68],"ideal":[71],"longitudinal":[73,121,175],"settings":[74],"as":[75],"they":[76],"explicitly":[77],"incorporate":[78],"evolution":[80],"over":[81],"time.":[82],"We":[83],"implemented":[84],"discrete-time":[86],"version":[87],"of":[88,94,127,150,160,173,185],"previously":[90],"published":[91],"continuous-time":[92],"evolving":[95],"contact":[96],"networks":[97],"men":[99,104],"who":[100],"sex":[102],"and":[105,154,192],"proposed":[106],"an":[107],"ABC-based":[108],"approximate":[109],"scheme":[111],"it.":[113],"As":[114],"expected,":[115],"we":[116],"found":[117],"that":[118],"two-wave":[120],"design":[123,172],"improves":[124],"the":[125,135,148,151,158,171],"accuracy":[126],"compared":[129],"cross-sectional":[132],"design.":[133],"However,":[134],"gains":[136],"precision":[138],"collecting":[140],"data":[141,187],"twice,":[142],"up":[143],"18%,":[145],"depend":[146],"on":[147],"spacing":[149],"two":[152],"waves":[153],"sensitive":[156],"choice":[159],"summary":[161],"statistics.":[162],"In":[163],"addition":[164],"methodological":[166],"developments,":[167],"our":[168],"results":[169],"inform":[170],"future":[174],"studies":[177],"diseases,":[181],"specifically":[182],"terms":[184],"what":[186],"collect":[189],"from":[190],"participants":[191],"when":[193],"do":[195],"so.":[196]},"counts_by_year":[],"updated_date":"2026-07-23T08:03:31.855105","created_date":"2025-10-10T00:00:00"}
